Rh6AG056600

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0009097
Physical Location & Seq
Forward (+)
8312149 .. 8314614
2466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG056600.1

Sequence Viewer

Length: 783 bp
ATGTCCGGCGCTCTGAGAAGAAACACCACCCTCACCCGCCTCATACACAAGCACTCCATCACCGACCACCACACACCTCCGCCGGGCCTCAAGGCCCAACTCCAGTCCAAAGCCTACCTCCGCGCCCCCAATGTCTTCCGTAAAGCCAAAGACTACGACCTCTCTCCTCCCTCCCTCTTCTCCTCCGCCTTCTTCTCCGCCAAGTCCTCCTCTTCCTCCGCCGCCGCCACCGCCTCCACGGGGCTCGTCGGCTGGTATCTGGGCCTCGTCAAGAACCGGCCCATTCTCACCAAGAGCGTCACCGCCGCCCTCATCTACACCGCCGCCGATTTGTCCTCCCAGACTATAGCGAAATCGGATACTTATGATCCTGTGAGGACATTGCGGATGGCTGGATATGGGATGCTGCTTCTAGGGCCGTCGCTGCATTTCTGGTTCAATTTCATGGCCAAAACGTTTCCGAAGCGGGATATGTTTTCGACATTGAAGAAAATGGCTCTGGGGCAGGGACTTTATGGACCTACAATGACTGTTGTGTTCTTCTCTGTGAATGCATTTTTACAAGGTGAAAATGGTGGAGAAGTTTTTGATCGTTTAAAGCGAGACTTGGTCCCTACATTGTTAAGTGGTGTTATGTACTGGCCAGTGTGTGATTTTATCACATACAGATTCATTCCTGTCCATTTGCAGACATTAGTGAGCAATGGATTTTCATATCTATGGACCATTTATTTGACATACATGGCAAGCCTGGAGAAAGCAAGTGCAATAGCTAGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

260

Amino Acids

28.78

Weight (kDa)

9.84

Isoelectric Point (pI)

43.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 185 - 245 3.6e-18 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 123
AclI AACGTT 1 cut(s) 455
AclWI GGATC 1 cut(s) 362
AcoI YGGCCR 2 cut(s) 447, 641
AfaI GTAC 1 cut(s) 638
AfiI CCNNNNNNNGG 2 cut(s) 83, 240
AgsI TTSAA 2 cut(s) 439, 487
AjnI CCWGG 1 cut(s) 750
AluBI AGCT 1 cut(s) 773
AluI AGCT 1 cut(s) 773
Alw26I GTCTC 1 cut(s) 597
AlwI GGATC 1 cut(s) 362
AoxI GGCC 7 cut(s) 85, 93, 262, 278, 416, 447, 641
ApeKI GCWGC 2 cut(s) 406, 424
ArsI GACNNNNNNTTYG 2 cut(s) 715, 747
AspLEI GCGC 2 cut(s) 11, 125
AspS9I GGNCC 8 cut(s) 85, 94, 262, 279, 416, 518, 610, 723
AsuC2I CCSGG 1 cut(s) 84
AsuHPI GGTGA 5 cut(s) 25, 52, 280, 292, 578
AvaII GGWCC 3 cut(s) 518, 610, 723
BalI TGGCCA 2 cut(s) 449, 643
BanII GRGCYC 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 127
BbvI GCAGC 2 cut(s) 393, 411
BccI CCATC 2 cut(s) 65, 382
BceAI ACGGC 1 cut(s) 403
BciT130I CCWGG 1 cut(s) 752
BciVI GTATCC 1 cut(s) 352
BcnI CCSGG 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 597
BfaI CTAG 2 cut(s) 413, 774
BfmI CTRYAG 1 cut(s) 345
BfoI RGCGCY 1 cut(s) 12
BfuI GTATCC 1 cut(s) 352
BisI GCNGC 6 cut(s) 222, 225, 306, 324, 407, 425
BlsI GCNGC 6 cut(s) 223, 226, 307, 325, 408, 426
Bme1390I CCNGG 2 cut(s) 84, 752
Bme18I GGWCC 3 cut(s) 518, 610, 723
BmgT120I GGNCC 8 cut(s) 85, 94, 262, 279, 416, 518, 610, 723
BmiI GGNNCC 1 cut(s) 612
BmrFI CCNGG 2 cut(s) 84, 752
BmsI GCATC 1 cut(s) 393
BpiI GAAGAC 1 cut(s) 127
BpmI CTGGAG 2 cut(s) 86, 773
BpuEI CTTGAG 1 cut(s) 74
BpuMI CCSGG 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 237
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 240
Bse118I RCCGGY 1 cut(s) 276
Bse1I ACTGG 3 cut(s) 103, 644, 644
Bse3DI GCAATG 2 cut(s) 380, 709
BseBI CCWGG 1 cut(s) 752
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 2 cut(s) 393, 408
BseLI CCNNNNNNNGG 2 cut(s) 83, 240
BseMI GCAATG 2 cut(s) 380, 709
BseMII CTCAG 1 cut(s) 5
BseNI ACTGG 3 cut(s) 103, 644, 644
BseRI GAGGAG 3 cut(s) 156, 172, 199
BseXI GCAGC 2 cut(s) 393, 411
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 7 cut(s) 87, 95, 264, 280, 418, 449, 643
BsiSI CCGG 3 cut(s) 6, 83, 277
BslFI GGGAC 2 cut(s) 522, 596
BslI CCNNNNNNNGG 2 cut(s) 83, 240
BsmAI GTCTC 1 cut(s) 597
BsmFI GGGAC 2 cut(s) 522, 596
BsmI GAATGC 1 cut(s) 556
BsnI GGCC 7 cut(s) 87, 95, 264, 280, 418, 449, 643
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 2 cut(s) 367, 589
BspANI GGCC 7 cut(s) 87, 95, 264, 280, 418, 449, 643
BspCNI CTCAG 1 cut(s) 6
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 612
BspPI GGATC 1 cut(s) 362
BsrDI GCAATG 2 cut(s) 380, 709
BsrFI RCCGGY 1 cut(s) 276
BsrI ACTGG 3 cut(s) 103, 644, 644
BssAI RCCGGY 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 2 cut(s) 367, 589
Bst2UI CCWGG 1 cut(s) 752
Bst4CI ACNGT 1 cut(s) 532
Bst6I CTCTTC 2 cut(s) 182, 217
BstC8I GCNNGC 1 cut(s) 748
BstDEI CTNAG 1 cut(s) 14
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 2 cut(s) 393, 408
BstFNI CGCG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 2 cut(s) 11, 125
BstKTI GATC 2 cut(s) 370, 592
BstMAI GTCTC 1 cut(s) 597
BstMBI GATC 2 cut(s) 367, 589
BstMWI GCNNNNNNNGC 3 cut(s) 230, 415, 424
BstNI CCWGG 1 cut(s) 752
BstSCI CCNGG 2 cut(s) 82, 750
BstSFI CTRYAG 1 cut(s) 345
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 393, 411
BstV2I GAAGAC 1 cut(s) 127
BsuI GTATCC 1 cut(s) 352
BsuRI GGCC 7 cut(s) 87, 95, 264, 280, 418, 449, 643
BtgI CCRYGG 1 cut(s) 237
BtsCI GGATG 2 cut(s) 393, 408
BtsIMutI CAGTG 1 cut(s) 651
Cac8I GCNNGC 1 cut(s) 748
CfoI GCGC 2 cut(s) 11, 125
Cfr10I RCCGGY 1 cut(s) 276
Cfr13I GGNCC 8 cut(s) 85, 94, 262, 279, 416, 518, 610, 723
CseI GACGC 1 cut(s) 286
Csp6I GTAC 1 cut(s) 637
CviAII CATG 2 cut(s) 445, 742
CviQI GTAC 1 cut(s) 637
DdeI CTNAG 1 cut(s) 14
DpnI GATC 2 cut(s) 369, 591
DpnII GATC 2 cut(s) 367, 589
DraI TTTAAA 1 cut(s) 597
EaeI YGGCCR 2 cut(s) 447, 641
Eam1104I CTCTTC 2 cut(s) 182, 217
EarI CTCTTC 2 cut(s) 182, 217
EciI GGCGGA 4 cut(s) 69, 175, 187, 208
Eco24I GRGCYC 1 cut(s) 246
Eco47I GGWCC 3 cut(s) 518, 610, 723
EcoRII CCWGG 1 cut(s) 750
EcoT22I ATGCAT 1 cut(s) 556
EcoT38I GRGCYC 1 cut(s) 246
FaeI CATG 2 cut(s) 448, 745
FalI AAGNNNNNCTT 2 cut(s) 590, 622
FaqI GGGAC 2 cut(s) 522, 596
FatI CATG 2 cut(s) 444, 741
FauI CCCGC 2 cut(s) 44, 459
Fnu4HI GCNGC 6 cut(s) 222, 225, 306, 324, 407, 425
FokI GGATG 2 cut(s) 400, 415
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 6 cut(s) 222, 225, 306, 324, 407, 425
FspBI CTAG 2 cut(s) 413, 774
GlaI GCGC 2 cut(s) 10, 124
GluI GCNGC 6 cut(s) 222, 225, 306, 324, 407, 425
GsuI CTGGAG 2 cut(s) 86, 773
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 7 cut(s) 87, 95, 264, 280, 418, 449, 643
HapII CCGG 3 cut(s) 6, 83, 277
HgaI GACGC 1 cut(s) 286
HhaI GCGC 2 cut(s) 11, 125
Hin1II CATG 2 cut(s) 448, 745
Hin6I GCGC 2 cut(s) 9, 123
HinP1I GCGC 2 cut(s) 9, 123
HinfI GANTC 1 cut(s) 669
HpaII CCGG 3 cut(s) 6, 83, 277
HphI GGTGA 5 cut(s) 25, 52, 280, 292, 578
Hpy188I TCNGA 3 cut(s) 15, 358, 462
Hpy188III TCNNGA 1 cut(s) 271
Hpy99I CGWCG 2 cut(s) 251, 424
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 1 cut(s) 532
HpyCH4IV ACGT 1 cut(s) 455
HpyCH4V TGCA 4 cut(s) 427, 554, 688, 767
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 415, 424
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 1 cut(s) 455
Hsp92II CATG 2 cut(s) 448, 745
HspAI GCGC 2 cut(s) 9, 123
Kzo9I GATC 2 cut(s) 367, 589
Lsp1109I GCAGC 2 cut(s) 393, 411
LweI GCATC 1 cut(s) 393
MaeI CTAG 2 cut(s) 413, 774
MaeII ACGT 1 cut(s) 455
MaeIII GTNAC 1 cut(s) 298
MalI GATC 2 cut(s) 369, 591
MboI GATC 2 cut(s) 367, 589
MboII GAAGA 7 cut(s) 30, 127, 169, 184, 204, 499, 532
MhlI GDGCHC 1 cut(s) 246
MlsI TGGCCA 2 cut(s) 449, 643
MluCI AATT 1 cut(s) 439
MluNI TGGCCA 2 cut(s) 449, 643
Mox20I TGGCCA 2 cut(s) 449, 643
Mph1103I ATGCAT 1 cut(s) 556
MscI TGGCCA 2 cut(s) 449, 643
MseI TTAA 2 cut(s) 596, 623
MslI CAYNNNNRTG 1 cut(s) 718
Msp20I TGGCCA 2 cut(s) 449, 643
MspI CCGG 3 cut(s) 6, 83, 277
MspR9I CCNGG 2 cut(s) 84, 752
Mva1269I GAATGC 1 cut(s) 556
MvaI CCWGG 1 cut(s) 752
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 3 cut(s) 230, 415, 424
NciI CCSGG 1 cut(s) 84
NdeII GATC 2 cut(s) 367, 589
NlaIII CATG 2 cut(s) 448, 745
NlaIV GGNNCC 1 cut(s) 612
NmuCI GTSAC 1 cut(s) 298
NsiI ATGCAT 1 cut(s) 556
PcsI WCGNNNNNNNCGW 1 cut(s) 598
PctI GAATGC 1 cut(s) 556
PfeI GAWTC 1 cut(s) 669
PflFI GACNNNGTC 1 cut(s) 608
PkrI GCNGC 6 cut(s) 223, 226, 307, 325, 408, 426
Psp1406I AACGTT 1 cut(s) 455
Psp6I CCWGG 1 cut(s) 750
PspGI CCWGG 1 cut(s) 750
PspN4I GGNNCC 1 cut(s) 612
PspPI GGNCC 8 cut(s) 85, 94, 262, 279, 416, 518, 610, 723
PsyI GACNNNGTC 1 cut(s) 608
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
RseI CAYNNNNRTG 1 cut(s) 718
SaqAI TTAA 2 cut(s) 596, 623
SatI GCNGC 6 cut(s) 222, 225, 306, 324, 407, 425
Sau3AI GATC 2 cut(s) 367, 589
Sau96I GGNCC 8 cut(s) 85, 94, 262, 279, 416, 518, 610, 723
ScrFI CCNGG 2 cut(s) 84, 752
SduI GDGCHC 1 cut(s) 246
SetI ASST 7 cut(s) 79, 120, 162, 458, 523, 568, 775
SfaNI GCATC 1 cut(s) 393
SfcI CTRYAG 1 cut(s) 345
SinI GGWCC 3 cut(s) 518, 610, 723
SmiMI CAYNNNNRTG 1 cut(s) 718
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 1 cut(s) 439
SspMI CTAG 2 cut(s) 413, 774
StyD4I CCNGG 2 cut(s) 82, 750
TaaI ACNGT 1 cut(s) 532
TaiI ACGT 1 cut(s) 458
TaqI TCGA 1 cut(s) 479
TasI AATT 1 cut(s) 439
TatI WGTACW 1 cut(s) 636
TauI GCSGC 4 cut(s) 224, 227, 308, 326
TfiI GAWTC 1 cut(s) 669
Tru1I TTAA 2 cut(s) 596, 623
Tru9I TTAA 2 cut(s) 596, 623
TscAI CASTG 1 cut(s) 651
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 2 cut(s) 406, 424
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 3 cut(s) 433, 661, 702
TspGWI ACGGA 1 cut(s) 128
TspRI CASTG 1 cut(s) 651
Tth111I GACNNNGTC 1 cut(s) 608
VpaK11BI GGWCC 3 cut(s) 518, 610, 723
XspI CTAG 2 cut(s) 413, 774
Zsp2I ATGCAT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.