RLG00000015045

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0009097
Physical Location & Seq
Reverse (-)
60987430 .. 60989272
1843 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015045

Sequence Viewer

Length: 795 bp
ATGTCCGGCGGCGCTCTGAGAAGAAACACTACCCTCACCCGCCTCATACACAAGCACTCCATCACCGACCGCCACACACCTCCGACTCCGACGCCGGGCCTCAAGGCCCAGCTTCAGTCCAAAGCCTACCTCCGCGCCCCCAATGTCTTCCGAAAAGCCAAAGACTACGACCTCTCTCCTCCCTCCCTCTTCTCCTCCGCCTTCTTCTCCGCCAAGTCCTCCTCTTCCTCCGCCGCCGCTACCGCCTCCACCGGGCTTGTCGGCTGGTATTTGGGCCTCGTCAAGAACCGGCCCGTTCTCACCAAGAGCGTCACCGCCGCCCTCATCTACACCGCCGCCGATTTGTCCTCCCAGACTATAGCGAAATCGGATACTTATGATCCTGTAAGGACATTGCGGATGGCTGGATATGGGATGGTGATTCTAGGGCCGTCGCTGCATTTCTGGTTCAATTTCATGGCCAAAACGTTTCCGAAGCGGGATATGTATTCGACATTGAAGAAAATGGCTCTGGGGCAGGGACTTTATGGACCTACTATGACTGTTGTGTTCTTCTCTGTGAATGCATTTTTGCAAGGTGAAAATGGTGGAGAAGTTTTTGATCGTTTAAAGCGAGACTTGGTCCCTACATTGTTAAGTGGTGTTATGTACTGGCCAGTATGTGATTTTATTACATACAGATTCATTCCTGTCCATTTGCAGACATTAGTGAGCAATGGATTTTCATATCTATGGACCATTTATTTGACATACATGGCAAGCCTGGAGAAAGCAAGTGCAATAGCTAGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

265

Amino Acids

29.14

Weight (kDa)

9.88

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 189 - 249 3.7e-18 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 135
AclI AACGTT 1 cut(s) 467
AclWI GGATC 1 cut(s) 374
AcoI YGGCCR 2 cut(s) 459, 653
AcuI CTGAAG 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 92
AfaI GTAC 1 cut(s) 650
AfiI CCNNNNNNNGG 2 cut(s) 95, 252
AgsI TTSAA 2 cut(s) 451, 499
AjnI CCWGG 1 cut(s) 762
AluBI AGCT 2 cut(s) 112, 785
AluI AGCT 2 cut(s) 112, 785
Alw26I GTCTC 1 cut(s) 609
AlwI GGATC 1 cut(s) 374
AoxI GGCC 7 cut(s) 97, 105, 274, 290, 428, 459, 653
ApeKI GCWGC 1 cut(s) 436
ArsI GACNNNNNNTTYG 2 cut(s) 727, 759
AspLEI GCGC 2 cut(s) 14, 137
AspS9I GGNCC 8 cut(s) 97, 106, 274, 291, 428, 530, 622, 735
AsuC2I CCSGG 2 cut(s) 96, 253
AsuHPI GGTGA 6 cut(s) 28, 55, 292, 304, 430, 590
AvaII GGWCC 3 cut(s) 530, 622, 735
BalI TGGCCA 2 cut(s) 461, 655
BarI GAAGNNNNNNTAC 2 cut(s) 13, 45
BbsI GAAGAC 1 cut(s) 139
BbvI GCAGC 1 cut(s) 423
BccI CCATC 3 cut(s) 68, 394, 409
BceAI ACGGC 1 cut(s) 415
BciT130I CCWGG 1 cut(s) 764
BciVI GTATCC 1 cut(s) 364
BcnI CCSGG 2 cut(s) 96, 253
BcoDI GTCTC 1 cut(s) 609
BfaI CTAG 2 cut(s) 425, 786
BfmI CTRYAG 1 cut(s) 357
BfoI RGCGCY 1 cut(s) 15
BfuI GTATCC 1 cut(s) 364
BisI GCNGC 6 cut(s) 10, 234, 237, 318, 336, 437
BlsI GCNGC 6 cut(s) 11, 235, 238, 319, 337, 438
Bme1390I CCNGG 3 cut(s) 96, 253, 764
Bme18I GGWCC 3 cut(s) 530, 622, 735
BmgT120I GGNCC 8 cut(s) 97, 106, 274, 291, 428, 530, 622, 735
BmiI GGNNCC 1 cut(s) 624
BmrFI CCNGG 3 cut(s) 96, 253, 764
BpiI GAAGAC 1 cut(s) 139
BpmI CTGGAG 1 cut(s) 785
BpuEI CTTGAG 1 cut(s) 86
BpuMI CCSGG 2 cut(s) 96, 253
BsaHI GRCGYC 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 252
Bse118I RCCGGY 1 cut(s) 288
Bse1I ACTGG 2 cut(s) 656, 656
Bse3DI GCAATG 2 cut(s) 392, 721
BseBI CCWGG 1 cut(s) 764
BseGI GGATG 2 cut(s) 405, 420
BseLI CCNNNNNNNGG 2 cut(s) 95, 252
BseMI GCAATG 2 cut(s) 392, 721
BseMII CTCAG 1 cut(s) 8
BseNI ACTGG 2 cut(s) 656, 656
BseRI GAGGAG 3 cut(s) 168, 184, 211
BseXI GCAGC 1 cut(s) 423
BseYI CCCAGC 1 cut(s) 108
Bsh1236I CGCG 1 cut(s) 135
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 7 cut(s) 99, 107, 276, 292, 430, 461, 655
BsiEI CGRYCG 1 cut(s) 70
BsiSI CCGG 4 cut(s) 6, 95, 252, 289
BslFI GGGAC 2 cut(s) 534, 608
BslI CCNNNNNNNGG 2 cut(s) 95, 252
BsmAI GTCTC 1 cut(s) 609
BsmFI GGGAC 2 cut(s) 534, 608
BsmI GAATGC 1 cut(s) 568
BsnI GGCC 7 cut(s) 99, 107, 276, 292, 430, 461, 655
Bsp143I GATC 2 cut(s) 379, 601
BspANI GGCC 7 cut(s) 99, 107, 276, 292, 430, 461, 655
BspCNI CTCAG 1 cut(s) 9
BspFNI CGCG 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 624
BspPI GGATC 1 cut(s) 374
BsrDI GCAATG 2 cut(s) 392, 721
BsrFI RCCGGY 1 cut(s) 288
BsrI ACTGG 2 cut(s) 656, 656
BssAI RCCGGY 1 cut(s) 288
BssMI GATC 2 cut(s) 379, 601
BssNI GRCGYC 1 cut(s) 92
Bst2UI CCWGG 1 cut(s) 764
Bst4CI ACNGT 1 cut(s) 544
Bst6I CTCTTC 2 cut(s) 194, 229
BstACI GRCGYC 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 760
BstDEI CTNAG 1 cut(s) 17
BstF5I GGATG 2 cut(s) 405, 420
BstFNI CGCG 1 cut(s) 135
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 2 cut(s) 14, 137
BstKTI GATC 2 cut(s) 382, 604
BstMAI GTCTC 1 cut(s) 609
BstMBI GATC 2 cut(s) 379, 601
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 2 cut(s) 242, 436
BstNI CCWGG 1 cut(s) 764
BstSCI CCNGG 3 cut(s) 94, 251, 762
BstSFI CTRYAG 1 cut(s) 357
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 423
BstV2I GAAGAC 1 cut(s) 139
BsuI GTATCC 1 cut(s) 364
BsuRI GGCC 7 cut(s) 99, 107, 276, 292, 430, 461, 655
BtsCI GGATG 2 cut(s) 405, 420
Cac8I GCNNGC 1 cut(s) 760
CfoI GCGC 2 cut(s) 14, 137
Cfr10I RCCGGY 1 cut(s) 288
Cfr13I GGNCC 8 cut(s) 97, 106, 274, 291, 428, 530, 622, 735
CseI GACGC 2 cut(s) 100, 298
Csp6I GTAC 1 cut(s) 649
CspCI CAANNNNNGTGG 2 cut(s) 238, 273
CviAII CATG 2 cut(s) 457, 754
CviQI GTAC 1 cut(s) 649
DdeI CTNAG 1 cut(s) 17
DpnI GATC 2 cut(s) 381, 603
DpnII GATC 2 cut(s) 379, 601
DraI TTTAAA 1 cut(s) 609
EaeI YGGCCR 2 cut(s) 459, 653
Eam1104I CTCTTC 2 cut(s) 194, 229
EarI CTCTTC 2 cut(s) 194, 229
EciI GGCGGA 3 cut(s) 187, 199, 220
Eco47I GGWCC 3 cut(s) 530, 622, 735
Eco57I CTGAAG 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 762
EcoT22I ATGCAT 1 cut(s) 568
FaeI CATG 2 cut(s) 460, 757
FalI AAGNNNNNCTT 2 cut(s) 602, 634
FaqI GGGAC 2 cut(s) 534, 608
FatI CATG 2 cut(s) 456, 753
FauI CCCGC 2 cut(s) 47, 471
Fnu4HI GCNGC 6 cut(s) 10, 234, 237, 318, 336, 437
FokI GGATG 2 cut(s) 412, 427
Fsp4HI GCNGC 6 cut(s) 10, 234, 237, 318, 336, 437
FspBI CTAG 2 cut(s) 425, 786
GlaI GCGC 2 cut(s) 13, 136
GluI GCNGC 6 cut(s) 10, 234, 237, 318, 336, 437
GsaI CCCAGC 1 cut(s) 112
GsuI CTGGAG 1 cut(s) 785
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 7 cut(s) 99, 107, 276, 292, 430, 461, 655
HapII CCGG 4 cut(s) 6, 95, 252, 289
HgaI GACGC 2 cut(s) 100, 298
HhaI GCGC 2 cut(s) 14, 137
Hin1I GRCGYC 1 cut(s) 92
Hin1II CATG 2 cut(s) 460, 757
Hin6I GCGC 2 cut(s) 12, 135
HinP1I GCGC 2 cut(s) 12, 135
HinfI GANTC 3 cut(s) 85, 421, 681
HpaII CCGG 4 cut(s) 6, 95, 252, 289
HphI GGTGA 6 cut(s) 28, 55, 292, 304, 430, 590
Hpy188I TCNGA 6 cut(s) 18, 84, 90, 152, 370, 474
Hpy188III TCNNGA 1 cut(s) 283
Hpy99I CGWCG 2 cut(s) 94, 436
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 1 cut(s) 544
HpyCH4IV ACGT 1 cut(s) 467
HpyCH4V TGCA 5 cut(s) 439, 566, 574, 700, 779
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 436
HpyF3I CTNAG 1 cut(s) 17
HpySE526I ACGT 1 cut(s) 467
Hsp92I GRCGYC 1 cut(s) 92
Hsp92II CATG 2 cut(s) 460, 757
HspAI GCGC 2 cut(s) 12, 135
Kzo9I GATC 2 cut(s) 379, 601
Lsp1109I GCAGC 1 cut(s) 423
MaeI CTAG 2 cut(s) 425, 786
MaeII ACGT 1 cut(s) 467
MaeIII GTNAC 1 cut(s) 310
MalI GATC 2 cut(s) 381, 603
MboI GATC 2 cut(s) 379, 601
MboII GAAGA 7 cut(s) 33, 139, 181, 196, 216, 511, 544
MlsI TGGCCA 2 cut(s) 461, 655
MluCI AATT 1 cut(s) 451
MluNI TGGCCA 2 cut(s) 461, 655
MlyI GAGTC 1 cut(s) 79
MmeI TCCRAC 2 cut(s) 107, 113
Mox20I TGGCCA 2 cut(s) 461, 655
Mph1103I ATGCAT 1 cut(s) 568
MscI TGGCCA 2 cut(s) 461, 655
MseI TTAA 2 cut(s) 608, 635
MslI CAYNNNNRTG 1 cut(s) 730
Msp20I TGGCCA 2 cut(s) 461, 655
MspI CCGG 4 cut(s) 6, 95, 252, 289
MspR9I CCNGG 3 cut(s) 96, 253, 764
Mva1269I GAATGC 1 cut(s) 568
MvaI CCWGG 1 cut(s) 764
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 2 cut(s) 242, 436
NciI CCSGG 2 cut(s) 96, 253
NdeII GATC 2 cut(s) 379, 601
NlaIII CATG 2 cut(s) 460, 757
NlaIV GGNNCC 1 cut(s) 624
NmuCI GTSAC 1 cut(s) 310
NsiI ATGCAT 1 cut(s) 568
PcsI WCGNNNNNNNCGW 1 cut(s) 610
PctI GAATGC 1 cut(s) 568
PfeI GAWTC 2 cut(s) 421, 681
PflFI GACNNNGTC 1 cut(s) 620
PkrI GCNGC 6 cut(s) 11, 235, 238, 319, 337, 438
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
Psp1406I AACGTT 1 cut(s) 467
Psp6I CCWGG 1 cut(s) 762
PspFI CCCAGC 1 cut(s) 108
PspGI CCWGG 1 cut(s) 762
PspN4I GGNNCC 1 cut(s) 624
PspPI GGNCC 8 cut(s) 97, 106, 274, 291, 428, 530, 622, 735
PsyI GACNNNGTC 1 cut(s) 620
RsaI GTAC 1 cut(s) 650
RsaNI GTAC 1 cut(s) 649
RseI CAYNNNNRTG 1 cut(s) 730
SaqAI TTAA 2 cut(s) 608, 635
SatI GCNGC 6 cut(s) 10, 234, 237, 318, 336, 437
Sau3AI GATC 2 cut(s) 379, 601
Sau96I GGNCC 8 cut(s) 97, 106, 274, 291, 428, 530, 622, 735
SchI GAGTC 1 cut(s) 79
ScrFI CCNGG 3 cut(s) 96, 253, 764
SetI ASST 8 cut(s) 82, 114, 132, 174, 470, 535, 580, 787
SfcI CTRYAG 1 cut(s) 357
SinI GGWCC 3 cut(s) 530, 622, 735
SmiMI CAYNNNNRTG 1 cut(s) 730
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 1 cut(s) 451
SspMI CTAG 2 cut(s) 425, 786
StyD4I CCNGG 3 cut(s) 94, 251, 762
TaaI ACNGT 1 cut(s) 544
TaiI ACGT 1 cut(s) 470
TaqI TCGA 1 cut(s) 491
TasI AATT 1 cut(s) 451
TatI WGTACW 1 cut(s) 648
TauI GCSGC 5 cut(s) 12, 236, 239, 320, 338
TfiI GAWTC 2 cut(s) 421, 681
Tru1I TTAA 2 cut(s) 608, 635
Tru9I TTAA 2 cut(s) 608, 635
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 1 cut(s) 436
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 3 cut(s) 445, 673, 714
Tth111I GACNNNGTC 1 cut(s) 620
VpaK11BI GGWCC 3 cut(s) 530, 622, 735
XspI CTAG 2 cut(s) 425, 786
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.