AT2G16900

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002091
Physical Location & Seq
Reverse (-)
7323570 .. 7326317
2748 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G16900.4

Sequence Viewer

Length: 1149 bp
ATGGATGTCAATCGGAAAGCTCACCCGGATTGTCGATATTCTTCAAATCCTTTCCATGAATGTGCTTCAGATTGTTTAGAGAAGATCTCTCAAGGCCGTGGAAATAAGAATTCAAAGAAGCAAGGTTCAAAGATTCTTAGCCTTCCGGGGAGTTTTGGTAAGAAAAAGACGGAGTCACAGCCACCGTCACCCCTGAGTACAAGGAACTATCAGAATGGTGCTGCTAATACCCCAAAGGTTCGTCAATCAAGACCTTCACCAGTAGCTATGAAGAAGACGCCAGTTCCAGAAGCGAACAAATCTTTACACTCTTTATCGTCTGATGGAATCTCTATTGACCTCAACGGTCAGAATGATTCTTTTAACCATAAGCAGGAGAAGCCATCGCGAACTGTTCCTCTATCCCCAAACAGCATGGCTGATCGTGGGAAACCCTTATCACCACGACCTCAAGGGCATGAACACAGTGGCAAGAATGACACAGCCAGTGAGATTAGTTTGTTTAATGTTGTAAGCCCTCCAAGATCATGCGCCAATGATGATGATGATGATGATGATGAAAACAATGGTTACGAGGAGGGAGTGGAGTTAGACCTTATATCAGTAATGTCAGACTCATGTGTTTCGGTTGGAAAATACCGTGTGAACTCAAGTGTTTCCACAATCCTACAGTCAATCATTGATAAACACGGAGACATAGCAGCAAACTGCAAGCTAGAATCAGCATCAATGCGATCCCGATACCTAGAGTGTCTATGCTCATTGATGCAAGAACTTGGATCAACCCCGGTGGGTCAGTTAACCGAACTAAAAGTAAAAGAGATGGTCGCGGTTCTCAAGGACTTGGAGTCTGTGAACATCGACGTTGGCTGGATGCGTTCGGTTCTTGAGGAGTTTGCTCAGTATCAAGAGAACACAGACTCAGAGAAGGAGAGACAAGAAGGATTGGTGAGGTCTAAGAAACAAGAAATGGAGATTCAAGAAGCTGATTTGGCTCGGATTGAGAAGGAAGTAGCGGAGGCGAGGTTGAGGGTCGAGGAGATGAAAGCAGAGCTCGCTGAGCTCGAGACAGAGCGGTTGCGGATGGAGGAGATGGGATTTAAGGTCGAGAAATATAAAGGGAAGACGTTTCTTGATGAACTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PEARLI-4

Protein Analysis

382

Amino Acids

42.53

Weight (kDa)

5.44

Isoelectric Point (pI)

53.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PEARLI-4 PF05278 72 - 291 8.7e-100 Arabidopsis phospholipase-like protein (PEARLI 4)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1075
AccII CGCG 2 cut(s) 388, 830
AciI CCGC 4 cut(s) 830, 1016, 1075, 1081
AclWI GGATC 2 cut(s) 729, 787
AcsI RAATTY 1 cut(s) 109
AcuI CTGAAG 1 cut(s) 51
AcyI GRCGYC 1 cut(s) 278
AfaI GTAC 1 cut(s) 199
AfiI CCNNNNNNNGG 1 cut(s) 373
AgsI TTSAA 4 cut(s) 45, 114, 129, 980
AhdI GACNNNNNGTC 1 cut(s) 847
AluBI AGCT 6 cut(s) 20, 266, 715, 986, 1054, 1063
AluI AGCT 6 cut(s) 20, 266, 715, 986, 1054, 1063
Alw21I GWGCWC 2 cut(s) 1056, 1065
Alw26I GTCTC 3 cut(s) 687, 928, 1061
AlwI GGATC 2 cut(s) 729, 787
Ama87I CYCGRG 1 cut(s) 1064
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 2 cut(s) 221, 701
ApoI RAATTY 1 cut(s) 109
AspLEI GCGC 1 cut(s) 533
AsuC2I CCSGG 3 cut(s) 26, 147, 788
AsuHPI GGTGA 5 cut(s) 14, 180, 249, 432, 961
AvaI CYCGRG 1 cut(s) 1064
BanII GRGCYC 2 cut(s) 1056, 1065
BbsI GAAGAC 2 cut(s) 281, 1130
Bbv12I GWGCWC 2 cut(s) 1056, 1065
BbvI GCAGC 2 cut(s) 208, 713
BccI CCATC 5 cut(s) 317, 391, 817, 1078, 1087
BceAI ACGGC 1 cut(s) 81
BcnI CCSGG 3 cut(s) 26, 147, 788
BcoDI GTCTC 3 cut(s) 687, 928, 1061
BfaI CTAG 2 cut(s) 716, 746
BfmI CTRYAG 1 cut(s) 668
BglII AGATCT 1 cut(s) 84
BisI GCNGC 2 cut(s) 222, 702
BlpI GCTNAGC 1 cut(s) 1059
BlsI GCNGC 2 cut(s) 223, 703
Bme1390I CCNGG 3 cut(s) 26, 147, 788
BmeRI GACNNNNNGTC 1 cut(s) 847
BmeT110I CYCGRG 1 cut(s) 1064
BmrFI CCNGG 3 cut(s) 26, 147, 788
BmsI GCATC 3 cut(s) 734, 756, 864
BpiI GAAGAC 2 cut(s) 281, 1130
BplI GAGNNNNNCTC 2 cut(s) 71, 103
Bpu1102I GCTNAGC 1 cut(s) 1059
BpuEI CTTGAG 5 cut(s) 75, 435, 634, 821, 908
BpuMI CCSGG 3 cut(s) 26, 147, 788
BsaBI GATNNNNATC 1 cut(s) 9
BsaHI GRCGYC 1 cut(s) 278
BsaJI CCNNGG 3 cut(s) 97, 146, 786
BsaXI ACNNNNNCTCC 4 cut(s) 142, 172, 1010, 1040
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse1I ACTGG 3 cut(s) 260, 281, 486
Bse8I GATNNNNATC 1 cut(s) 9
BseDI CCNNGG 3 cut(s) 97, 146, 786
BseGI GGATG 3 cut(s) 10, 879, 1089
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMII CTCAG 4 cut(s) 185, 914, 936, 1050
BseNI ACTGG 3 cut(s) 260, 281, 486
BseRI GAGGAG 4 cut(s) 590, 905, 1052, 1103
BseXI GCAGC 2 cut(s) 208, 713
Bsh1236I CGCG 2 cut(s) 388, 830
BshFI GGCC 1 cut(s) 96
BsiHKAI GWGCWC 2 cut(s) 1056, 1065
BsiHKCI CYCGRG 1 cut(s) 1064
BsiSI CCGG 3 cut(s) 26, 146, 788
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 3 cut(s) 687, 928, 1061
BsnI GGCC 1 cut(s) 96
BsoBI CYCGRG 1 cut(s) 1064
Bsp1286I GDGCHC 2 cut(s) 1056, 1065
Bsp143I GATC 5 cut(s) 84, 421, 524, 734, 779
Bsp1720I GCTNAGC 1 cut(s) 1059
Bsp68I TCGCGA 1 cut(s) 388
BspACI CCGC 4 cut(s) 830, 1016, 1075, 1081
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 4 cut(s) 186, 913, 935, 1051
BspFNI CGCG 2 cut(s) 388, 830
BspPI GGATC 2 cut(s) 729, 787
BsrBI CCGCTC 1 cut(s) 1075
BsrI ACTGG 3 cut(s) 260, 281, 486
BssECI CCNNGG 3 cut(s) 97, 146, 786
BssMI GATC 5 cut(s) 84, 421, 524, 734, 779
BssNI GRCGYC 1 cut(s) 278
Bst4CI ACNGT 6 cut(s) 186, 347, 394, 467, 641, 672
BstACI GRCGYC 1 cut(s) 278
BstC8I GCNNGC 2 cut(s) 713, 1056
BstDEI CTNAG 6 cut(s) 137, 194, 900, 922, 957, 1059
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 3 cut(s) 10, 879, 1089
BstFNI CGCG 2 cut(s) 388, 830
BstHHI GCGC 1 cut(s) 533
BstKTI GATC 5 cut(s) 87, 424, 527, 737, 782
BstMAI GTCTC 3 cut(s) 687, 928, 1061
BstMBI GATC 5 cut(s) 84, 421, 524, 734, 779
BstMWI GCNNNNNNNGC 4 cut(s) 379, 992, 1055, 1060
BstSCI CCNGG 3 cut(s) 24, 145, 786
BstSFI CTRYAG 1 cut(s) 668
BstUI CGCG 2 cut(s) 388, 830
BstV1I GCAGC 2 cut(s) 208, 713
BstV2I GAAGAC 2 cut(s) 281, 1130
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
BsuRI GGCC 1 cut(s) 96
BtgI CCRYGG 1 cut(s) 97
BtgZI GCGATG 1 cut(s) 369
BtsCI GGATG 3 cut(s) 10, 879, 1089
BtsIMutI CAGTG 2 cut(s) 472, 493
BtuMI TCGCGA 1 cut(s) 388
Cac8I GCNNGC 2 cut(s) 713, 1056
CfoI GCGC 1 cut(s) 533
CseI GACGC 1 cut(s) 286
Csp6I GTAC 1 cut(s) 198
CspCI CAANNNNNGTGG 2 cut(s) 771, 806
CviAII CATG 5 cut(s) 56, 415, 458, 528, 618
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 6 cut(s) 137, 194, 900, 922, 957, 1059
DpnI GATC 5 cut(s) 86, 423, 526, 736, 781
DpnII GATC 5 cut(s) 84, 421, 524, 734, 779
DriI GACNNNNNGTC 1 cut(s) 847
Eam1105I GACNNNNNGTC 1 cut(s) 847
Ecl136II GAGCTC 2 cut(s) 1054, 1063
Eco24I GRGCYC 2 cut(s) 1056, 1065
Eco53kI GAGCTC 2 cut(s) 1054, 1063
Eco57I CTGAAG 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 1064
EcoICRI GAGCTC 2 cut(s) 1054, 1063
EcoRI GAATTC 1 cut(s) 109
EcoT38I GRGCYC 2 cut(s) 1056, 1065
FaeI CATG 5 cut(s) 59, 418, 461, 531, 621
FatI CATG 5 cut(s) 55, 414, 457, 527, 617
Fnu4HI GCNGC 2 cut(s) 222, 702
FokI GGATG 3 cut(s) 17, 886, 1096
FriOI GRGCYC 2 cut(s) 1056, 1065
Fsp4HI GCNGC 2 cut(s) 222, 702
FspBI CTAG 2 cut(s) 716, 746
GlaI GCGC 1 cut(s) 532
GluI GCNGC 2 cut(s) 222, 702
HaeIII GGCC 1 cut(s) 96
HapII CCGG 3 cut(s) 26, 146, 788
HgaI GACGC 1 cut(s) 286
HhaI GCGC 1 cut(s) 533
Hin1I GRCGYC 1 cut(s) 278
Hin1II CATG 5 cut(s) 59, 418, 461, 531, 621
Hin6I GCGC 1 cut(s) 531
HinP1I GCGC 1 cut(s) 531
HincII GTYRAC 1 cut(s) 801
HindII GTYRAC 1 cut(s) 801
HinfI GANTC 9 cut(s) 133, 173, 327, 356, 614, 719, 848, 920, 976
HpaI GTTAAC 1 cut(s) 801
HpaII CCGG 3 cut(s) 26, 146, 788
HphI GGTGA 5 cut(s) 14, 180, 249, 432, 961
Hpy166II GTNNAC 3 cut(s) 646, 801, 856
Hpy188I TCNGA 8 cut(s) 15, 70, 213, 322, 351, 613, 925, 999
Hpy8I GTNNAC 3 cut(s) 646, 801, 856
Hpy99I CGWCG 1 cut(s) 866
HpyAV CCTTC 5 cut(s) 152, 264, 922, 935, 1000
HpyCH4III ACNGT 6 cut(s) 186, 347, 394, 467, 641, 672
HpyCH4IV ACGT 2 cut(s) 864, 1127
HpyCH4V TGCA 2 cut(s) 711, 769
HpyF10VI GCNNNNNNNGC 4 cut(s) 379, 992, 1055, 1060
HpyF3I CTNAG 6 cut(s) 137, 194, 900, 922, 957, 1059
HpySE526I ACGT 2 cut(s) 864, 1127
Hsp92I GRCGYC 1 cut(s) 278
Hsp92II CATG 5 cut(s) 59, 418, 461, 531, 621
HspAI GCGC 1 cut(s) 531
KspAI GTTAAC 1 cut(s) 801
Kzo9I GATC 5 cut(s) 84, 421, 524, 734, 779
Lsp1109I GCAGC 2 cut(s) 208, 713
LweI GCATC 3 cut(s) 734, 756, 864
MaeI CTAG 2 cut(s) 716, 746
MaeII ACGT 2 cut(s) 864, 1127
MaeIII GTNAC 3 cut(s) 174, 186, 569
MalI GATC 5 cut(s) 86, 423, 526, 736, 781
MbiI CCGCTC 1 cut(s) 1075
MboI GATC 5 cut(s) 84, 421, 524, 734, 779
MboII GAAGA 5 cut(s) 33, 94, 283, 286, 1135
MflI RGATCY 1 cut(s) 84
MhlI GDGCHC 2 cut(s) 1056, 1065
MluCI AATT 1 cut(s) 109
MlyI GAGTC 4 cut(s) 182, 608, 857, 914
MmeI TCCRAC 1 cut(s) 610
MseI TTAA 4 cut(s) 363, 504, 800, 1101
MslI CAYNNNNRTG 1 cut(s) 60
MspI CCGG 3 cut(s) 26, 146, 788
MspR9I CCNGG 3 cut(s) 26, 147, 788
MvnI CGCG 2 cut(s) 388, 830
MwoI GCNNNNNNNGC 4 cut(s) 379, 992, 1055, 1060
NciI CCSGG 3 cut(s) 26, 147, 788
NdeII GATC 5 cut(s) 84, 421, 524, 734, 779
NlaIII CATG 5 cut(s) 59, 418, 461, 531, 621
NmuCI GTSAC 2 cut(s) 174, 186
NruI TCGCGA 1 cut(s) 388
PaeR7I CTCGAG 1 cut(s) 1064
PcsI WCGNNNNNNNCGW 1 cut(s) 1062
PfeI GAWTC 5 cut(s) 133, 327, 356, 719, 976
PflFI GACNNNGTC 1 cut(s) 172
PkrI GCNGC 2 cut(s) 223, 703
PleI GAGTC 4 cut(s) 181, 608, 856, 914
PpsI GAGTC 4 cut(s) 181, 608, 856, 914
Psp124BI GAGCTC 2 cut(s) 1056, 1065
PsuI RGATCY 1 cut(s) 84
PsyI GACNNNGTC 1 cut(s) 172
RruI TCGCGA 1 cut(s) 388
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
RseI CAYNNNNRTG 1 cut(s) 60
SacI GAGCTC 2 cut(s) 1056, 1065
SaqAI TTAA 4 cut(s) 363, 504, 800, 1101
SatI GCNGC 2 cut(s) 222, 702
Sau3AI GATC 5 cut(s) 84, 421, 524, 734, 779
SchI GAGTC 4 cut(s) 182, 608, 857, 914
ScrFI CCNGG 3 cut(s) 26, 147, 788
SduI GDGCHC 2 cut(s) 1056, 1065
SfaNI GCATC 3 cut(s) 734, 756, 864
SfcI CTRYAG 1 cut(s) 668
Sfr274I CTCGAG 1 cut(s) 1064
SlaI CTCGAG 1 cut(s) 1064
SmiMI CAYNNNNRTG 1 cut(s) 60
SmlI CTYRAG 6 cut(s) 90, 450, 649, 836, 887, 1064
SmoI CTYRAG 6 cut(s) 90, 450, 649, 836, 887, 1064
Sse9I AATT 1 cut(s) 109
SsiI CCGC 4 cut(s) 830, 1016, 1075, 1081
SspMI CTAG 2 cut(s) 716, 746
SstI GAGCTC 2 cut(s) 1056, 1065
StyD4I CCNGG 3 cut(s) 24, 145, 786
TaaI ACNGT 6 cut(s) 186, 347, 394, 467, 641, 672
TaiI ACGT 2 cut(s) 867, 1130
TaqI TCGA 5 cut(s) 34, 861, 1035, 1065, 1107
TasI AATT 1 cut(s) 109
TatI WGTACW 1 cut(s) 197
TfiI GAWTC 5 cut(s) 133, 327, 356, 719, 976
Tru1I TTAA 4 cut(s) 363, 504, 800, 1101
Tru9I TTAA 4 cut(s) 363, 504, 800, 1101
TscAI CASTG 2 cut(s) 472, 493
TseFI GTSAC 2 cut(s) 174, 186
TseI GCWGC 2 cut(s) 221, 701
Tsp45I GTSAC 2 cut(s) 174, 186
TspDTI ATGAA 5 cut(s) 72, 284, 474, 573, 1058
TspGWI ACGGA 2 cut(s) 185, 705
TspRI CASTG 2 cut(s) 472, 493
Tth111I GACNNNGTC 1 cut(s) 172
XapI RAATTY 1 cut(s) 109
XhoI CTCGAG 1 cut(s) 1064
XspI CTAG 2 cut(s) 716, 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.