RchiOBHm_Chr6g0278431

Arabidopsis phospholipase-like protein (PEARLI 4)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
41546973 .. 41550288
3316 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24976

Sequence Viewer

Length: 1101 bp
ATGGCTTTGATAGGAAGAGTGCACCCTGATTGCGTAAACGTTGCGAATCCGTACCATGAATGCACTGAAACTTGCCTGAGAAAAATTGCAGAAGGGAAAGGCCGGAAGAATAAAAAGAAATCAGATAATGGCGGTGATATAAAAGATGGTGAGTTCAACAGAAAGATGGCTGGAGAGAGAAGAGTGGATGCAACTAGGGCATCTAATCCTTACCATCAATCTGGTCAATCTTTTCCGAAAAGAACTGCCGGTGGTGAAGCTCGTGGGGATATAAAAGAATCAGGCTCCATACTTGATATTCCTATATTGGGTGGACGAAAAGAGAGATCCCGACCAAAGACTCCTCAAGATCTTGACAATGTATCTGACCGAAGTGTGGTTTATCCTTATGATGCTCAATCATCTCCATCTAAGGACAAGGTGAATGTAGAGAATGGGTCTGTCCTTGATGATCCTATATTTGGAAAAAGAAAGCCAGTCTCCCAAACAAGGTCTGCTGAAGAGCATGAAAATGGTCAAGGTGTTGATCCTTCATCATTTCCAGAAAAGCTGAAAATAGAGAACGGATCTGCCCTTGATGATCCTATATTTGGCAGAAGAAAGCAGGTAGCCCAGCCAAAGCCCCATGAAGAGCTTGACAATGGATCCGGTCAAGGTTCAGTTAATCCTTCTGGTTCTCCCATGTCTCCATCTAATGAAATTGTGAAAATAGGGAATGGCTCCACCCTTGATGATCTTATATTTGGCCGCAAAAAGCAGGGATCTGAACCAAAGCCTGAAGAAGAGATTGAGAATGTACCTGTTGTGAAATTAGATAATGATGAGTATAAGTCTTATTCTGGACCGCTTGCTCAAGTAAAAGATCCTTCCTTGAACAAGAAGCAAATCAATTCCTCTGGGGCAGTGCCTACATCTGGAATTATCAAAATGACCCCTCTCTTTCTCTCCCTACACACAATGGTGGAGAAGGTCCCACTGCCACACCTTCTGAAAACAGAAGCTTCAGTTTCTCAGGTTCTCCCTATGTTGAAGAGAGTGATGATGACGATGCACGATCTGTCAATTCTGATTCCAGTGTTTCTGTGGGAAAGTACCGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

366

Amino Acids

40.04

Weight (kDa)

8.24

Isoelectric Point (pI)

54.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 595
AciI CCGC 3 cut(s) 132, 748, 845
AclI AACGTT 1 cut(s) 39
AclWI GGATC 9 cut(s) 321, 446, 521, 574, 575, 639, 652, 769, 857
AcoI YGGCCR 1 cut(s) 745
AcuI CTGAAG 3 cut(s) 519, 798, 987
AfaI GTAC 3 cut(s) 53, 798, 1093
AfiI CCNNNNNNNGG 6 cut(s) 308, 376, 461, 489, 590, 914
AgsI TTSAA 3 cut(s) 157, 874, 1030
AleI CACNNNNGTG 1 cut(s) 959
AluBI AGCT 4 cut(s) 260, 550, 634, 1001
AluI AGCT 4 cut(s) 260, 550, 634, 1001
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 2 cut(s) 484, 690
Alw44I GTGCAC 1 cut(s) 20
AlwI GGATC 9 cut(s) 321, 446, 521, 574, 575, 639, 652, 769, 857
AoxI GGCC 2 cut(s) 100, 745
ApaLI GTGCAC 1 cut(s) 20
AspS9I GGNCC 2 cut(s) 842, 970
AsuHPI GGTGA 4 cut(s) 146, 161, 266, 433
AvaII GGWCC 2 cut(s) 842, 970
BaeGI GKGCMC 1 cut(s) 24
BamHI GGATCC 1 cut(s) 644
BauI CACGAG 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 24
BccI CCATC 5 cut(s) 140, 160, 222, 415, 697
BcoDI GTCTC 2 cut(s) 484, 690
BfaI CTAG 1 cut(s) 195
BfuAI ACCTGC 1 cut(s) 595
BglII AGATCT 1 cut(s) 349
BisI GCNGC 1 cut(s) 748
BlsI GCNGC 1 cut(s) 749
Bme18I GGWCC 2 cut(s) 842, 970
BmgT120I GGNCC 2 cut(s) 842, 970
BmiI GGNNCC 4 cut(s) 286, 646, 721, 972
BmsI GCATC 4 cut(s) 178, 209, 382, 1038
BpmI CTGGAG 1 cut(s) 192
BpuEI CTTGAG 2 cut(s) 330, 837
BsaWI WCCGGW 1 cut(s) 647
Bsc4I CCNNNNNNNGG 6 cut(s) 308, 376, 461, 489, 590, 914
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 2 cut(s) 476, 1073
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 6 cut(s) 308, 376, 461, 489, 590, 914
BseMII CTCAG 2 cut(s) 68, 1025
BseNI ACTGG 2 cut(s) 476, 1073
BseRI GAGGAG 1 cut(s) 333
BseSI GKGCMC 1 cut(s) 24
BseYI CCCAGC 1 cut(s) 612
BshFI GGCC 2 cut(s) 102, 747
BsiHKAI GWGCWC 1 cut(s) 24
BsiSI CCGG 3 cut(s) 103, 249, 648
BslFI GGGAC 1 cut(s) 956
BslI CCNNNNNNNGG 6 cut(s) 308, 376, 461, 489, 590, 914
BsmAI GTCTC 2 cut(s) 484, 690
BsmFI GGGAC 1 cut(s) 956
BsmI GAATGC 1 cut(s) 65
BsnI GGCC 2 cut(s) 102, 747
Bsp1286I GDGCHC 1 cut(s) 24
BspACI CCGC 3 cut(s) 132, 748, 845
BspANI GGCC 2 cut(s) 102, 747
BspCNI CTCAG 2 cut(s) 69, 1024
BspLI GGNNCC 4 cut(s) 286, 646, 721, 972
BspMI ACCTGC 1 cut(s) 595
BspPI GGATC 9 cut(s) 321, 446, 521, 574, 575, 639, 652, 769, 857
BspQI GCTCTTC 2 cut(s) 495, 624
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 2 cut(s) 476, 1073
BssAI RCCGGY 1 cut(s) 248
BssSI CACGAG 1 cut(s) 261
Bst2BI CACGAG 1 cut(s) 261
Bst4CI ACNGT 1 cut(s) 1096
Bst6I CTCTTC 6 cut(s) 10, 175, 495, 624, 777, 1025
BstC8I GCNNGC 1 cut(s) 849
BstDEI CTNAG 3 cut(s) 77, 411, 1011
BstF5I GGATG 1 cut(s) 193
BstMAI GTCTC 2 cut(s) 484, 690
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstSLI GKGCMC 1 cut(s) 24
BstX2I RGATCY 6 cut(s) 326, 349, 566, 644, 761, 862
BstXI CCANNNNNNTGG 1 cut(s) 221
BstYI RGATCY 6 cut(s) 326, 349, 566, 644, 761, 862
BsuRI GGCC 2 cut(s) 102, 747
BtsCI GGATG 1 cut(s) 193
BtsI GCAGTG 2 cut(s) 909, 974
BtsIMutI CAGTG 4 cut(s) 63, 909, 974, 1080
BveI ACCTGC 1 cut(s) 595
Cac8I GCNNGC 1 cut(s) 849
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 2 cut(s) 842, 970
Csp6I GTAC 3 cut(s) 52, 797, 1092
CviAII CATG 4 cut(s) 56, 506, 626, 682
CviQI GTAC 3 cut(s) 52, 797, 1092
DdeI CTNAG 3 cut(s) 77, 411, 1011
EaeI YGGCCR 1 cut(s) 745
Eam1104I CTCTTC 6 cut(s) 10, 175, 495, 624, 777, 1025
EarI CTCTTC 6 cut(s) 10, 175, 495, 624, 777, 1025
Eco47I GGWCC 2 cut(s) 842, 970
Eco57I CTGAAG 3 cut(s) 519, 798, 987
EcoO109I RGGNCCY 1 cut(s) 970
FaeI CATG 4 cut(s) 59, 509, 629, 685
FaqI GGGAC 1 cut(s) 956
FatI CATG 4 cut(s) 55, 505, 625, 681
Fnu4HI GCNGC 1 cut(s) 748
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 748
FspBI CTAG 1 cut(s) 195
GluI GCNGC 1 cut(s) 748
GsaI CCCAGC 1 cut(s) 616
GsuI CTGGAG 1 cut(s) 192
HaeIII GGCC 2 cut(s) 102, 747
HapII CCGG 3 cut(s) 103, 249, 648
Hin1II CATG 4 cut(s) 59, 509, 629, 685
HindIII AAGCTT 1 cut(s) 999
HinfI GANTC 4 cut(s) 46, 278, 340, 1069
HpaII CCGG 3 cut(s) 103, 249, 648
HphI GGTGA 4 cut(s) 146, 161, 266, 433
Hpy166II GTNNAC 3 cut(s) 22, 37, 314
Hpy188I TCNGA 6 cut(s) 124, 237, 367, 766, 990, 1068
Hpy188III TCNNGA 6 cut(s) 330, 347, 353, 542, 840, 915
Hpy8I GTNNAC 3 cut(s) 22, 37, 314
HpyAV CCTTC 6 cut(s) 86, 540, 678, 876, 961, 995
HpyCH4III ACNGT 1 cut(s) 1096
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 5 cut(s) 22, 63, 89, 191, 1051
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 3 cut(s) 77, 411, 1011
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 4 cut(s) 59, 509, 629, 685
LguI GCTCTTC 2 cut(s) 495, 624
LmnI GCTCC 2 cut(s) 290, 725
LweI GCATC 4 cut(s) 178, 209, 382, 1038
MaeI CTAG 1 cut(s) 195
MaeII ACGT 1 cut(s) 39
MboII GAAGA 9 cut(s) 27, 118, 192, 512, 609, 641, 791, 794, 1042
MflI RGATCY 6 cut(s) 326, 349, 566, 644, 761, 862
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 6 cut(s) 84, 699, 809, 889, 918, 1062
MlyI GAGTC 1 cut(s) 334
MnlI CCTC 3 cut(s) 354, 904, 945
MseI TTAA 1 cut(s) 663
MslI CAYNNNNRTG 2 cut(s) 510, 959
MspI CCGG 3 cut(s) 103, 249, 648
Mva1269I GAATGC 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 197
NlaIII CATG 4 cut(s) 59, 509, 629, 685
NlaIV GGNNCC 4 cut(s) 286, 646, 721, 972
OliI CACNNNNGTG 1 cut(s) 959
PciSI GCTCTTC 2 cut(s) 495, 624
PctI GAATGC 1 cut(s) 65
PfeI GAWTC 3 cut(s) 46, 278, 1069
PkrI GCNGC 1 cut(s) 749
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
PpuMI RGGWCCY 1 cut(s) 970
Psp1406I AACGTT 1 cut(s) 39
Psp5II RGGWCCY 1 cut(s) 970
PspFI CCCAGC 1 cut(s) 612
PspN4I GGNNCC 4 cut(s) 286, 646, 721, 972
PspPI GGNCC 2 cut(s) 842, 970
PspPPI RGGWCCY 1 cut(s) 970
PsuI RGATCY 6 cut(s) 326, 349, 566, 644, 761, 862
RsaI GTAC 3 cut(s) 53, 798, 1093
RsaNI GTAC 3 cut(s) 52, 797, 1092
RseI CAYNNNNRTG 2 cut(s) 510, 959
SapI GCTCTTC 2 cut(s) 495, 624
SaqAI TTAA 1 cut(s) 663
SatI GCNGC 1 cut(s) 748
Sau96I GGNCC 2 cut(s) 842, 970
SchI GAGTC 1 cut(s) 334
SduI GDGCHC 1 cut(s) 24
SfaNI GCATC 4 cut(s) 178, 209, 382, 1038
SinI GGWCC 2 cut(s) 842, 970
SmiMI CAYNNNNRTG 2 cut(s) 510, 959
SmlI CTYRAG 2 cut(s) 345, 852
SmoI CTYRAG 2 cut(s) 345, 852
Sse9I AATT 6 cut(s) 84, 699, 809, 889, 918, 1062
SsiI CCGC 3 cut(s) 132, 748, 845
SspMI CTAG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 1096
TaiI ACGT 1 cut(s) 42
TaqII GACCGA 1 cut(s) 384
TasI AATT 6 cut(s) 84, 699, 809, 889, 918, 1062
TauI GCSGC 1 cut(s) 750
TfiI GAWTC 3 cut(s) 46, 278, 1069
Tru1I TTAA 1 cut(s) 663
Tru9I TTAA 1 cut(s) 663
TscAI CASTG 4 cut(s) 70, 909, 981, 1080
TspDTI ATGAA 5 cut(s) 72, 522, 522, 642, 711
TspGWI ACGGA 2 cut(s) 39, 579
TspRI CASTG 4 cut(s) 70, 909, 981, 1080
VneI GTGCAC 1 cut(s) 20
VpaK11BI GGWCC 2 cut(s) 842, 970
XcmI CCANNNNNNNNNTGG 1 cut(s) 1080
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.