AT4G35110

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002091
Physical Location & Seq
Reverse (-)
16712280 .. 16715114
2835 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G35110.2

Sequence Viewer

Length: 1161 bp
ATGGATTTCAATAGAAAAGCTCATCCAGATTGCGTATATGCGGATAATCCTTTCCATGAATGTGCTTCAGCTTGTTTAGAGAAAATTGCTCAAGGCCATGTCAAGAAGAACACTAAGAAGCAAAGTTCAAGGCTTCTTAGCTTCTCAGGGAGTTTCGGTAGGAAAAAGAAGGAGTCGAATTCACAACCGCCTACACCGCTATCCGCAAGGCCTTATCAAAACGGCAGAGGCGGTTTTGCAAATGGTAATTCCCCAAAGGTTCATCATTCTGTAGCTCCACCTGCTTCCGTGAAGAAGAAGATTGTTTCTGAAACGAAAAATTCTTTCACTTCTTCATCATCCGGTGATCCGGATGATTTCTTCAACCATAAACCAGAGAAGAAACCTTCTCAAACCATTCCCCTTTCATCAAACAATTTGGTTGATCAAAGCAAAGTGGTATCACCTAAACCGGGAATACAAGAACACAATGGGAAGATTGGAGAAGGCGGCGAAACTAGACTCTTTAGTTTCCTAAGCCTTCCAAGATCGCCTGGAAAAGAGAGCAATGATGATTTTTCTGATGATGATGACGAAAACAACAATGAGATTGGTGTAGAGCTCGATCTCGAATCAGTAATGTCTGACACTTTTGTCTCTGTCGGGAAATACCGAGTCAGATCGGGTTCATCCACTATACTAAGTGCTGTCATCGAAAAGCACGGAGACATTGCTCAAAACTGTAAGCTGGAATCGGATTCAATGCGATCACGTTACCTCGAGTGTTTATGCTCACTGATGCAGGAACTTAGGTCAACCCCGGTAGGGCAGTTGAGCAAAGTCAAGGTCAAAGAGATGCTTGCGGTTCTCAAAGACTTGGAGTCTGTGAACATTGAAGTAGCTTGGCTACGTTCTGTTCTTGAAGAGTTTGCGCAGTCTCAAGAAGATGTAGAAAATGAGAAAGAGAGGCATGATGGTTTAGTGAAGGCTAAGAGAGAAGAGCTTGAGGCTCAAGAAACGGATTTGGTTAGGATGGAGAAGGAAGTGGTGGAAGTGAAGCGGCGGATTGAGGAGACGCGGGCTCAGATGGTTGAGATCGAAGCAGAACGGTTGAGGATGGAGAAAATGGGATTCAAAATGGAGAAATTTAAAGGGAAATCGTTTATAGATGAGCTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PEARLI-4

Protein Analysis

386

Amino Acids

43.26

Weight (kDa)

6.21

Isoelectric Point (pI)

52.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PEARLI-4 PF05278 162 - 384 8.2e-99 Arabidopsis phospholipase-like protein (PEARLI 4)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 289
AasI GACNNNNNNGTC 1 cut(s) 632
Acc16I TGCGCA 1 cut(s) 912
Acc36I ACCTGC 1 cut(s) 289
AccII CGCG 1 cut(s) 1057
AccIII TCCGGA 1 cut(s) 349
AclWI GGATC 1 cut(s) 341
AcsI RAATTY 3 cut(s) 178, 319, 1124
AcuI CTGAAG 1 cut(s) 51
AfiI CCNNNNNNNGG 2 cut(s) 452, 804
AgsI TTSAA 7 cut(s) 10, 129, 364, 741, 875, 902, 1114
AhdI GACNNNNNGTC 1 cut(s) 859
AjnI CCWGG 1 cut(s) 532
AluBI AGCT 9 cut(s) 20, 71, 141, 275, 601, 727, 881, 982, 1153
AluI AGCT 9 cut(s) 20, 71, 141, 275, 601, 727, 881, 982, 1153
Alw21I GWGCWC 1 cut(s) 603
Alw26I GTCTC 4 cut(s) 640, 699, 921, 1046
AlwI GGATC 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 758
Aor13HI TCCGGA 1 cut(s) 349
AoxI GGCC 2 cut(s) 94, 209
ApoI RAATTY 3 cut(s) 178, 319, 1124
ArsI GACNNNNNNTTYG 2 cut(s) 810, 842
AspLEI GCGC 1 cut(s) 913
AsuC2I CCSGG 2 cut(s) 453, 800
AsuHPI GGTGA 2 cut(s) 356, 435
AvaI CYCGRG 1 cut(s) 758
BanII GRGCYC 2 cut(s) 603, 1063
Bbv12I GWGCWC 1 cut(s) 603
BccI CCATC 4 cut(s) 947, 1006, 1060, 1090
BceAI ACGGC 1 cut(s) 238
BciT130I CCWGG 1 cut(s) 534
BclI TGATCA 1 cut(s) 424
BcnI CCSGG 2 cut(s) 453, 800
BcoDI GTCTC 4 cut(s) 640, 699, 921, 1046
BfaI CTAG 1 cut(s) 498
BfmI CTRYAG 1 cut(s) 270
BfuAI ACCTGC 1 cut(s) 289
BisI GCNGC 2 cut(s) 490, 1040
BlsI GCNGC 2 cut(s) 491, 1041
Bme1390I CCNGG 3 cut(s) 453, 534, 800
BmeRI GACNNNNNGTC 1 cut(s) 859
BmeT110I CYCGRG 1 cut(s) 758
BmrFI CCNGG 3 cut(s) 453, 534, 800
BmsI GCATC 2 cut(s) 768, 825
Bpu10I CCTNAGC 1 cut(s) 515
BpuEI CTTGAG 4 cut(s) 75, 903, 975, 1004
BpuMI CCSGG 2 cut(s) 453, 800
BsaJI CCNNGG 1 cut(s) 798
BsaWI WCCGGW 2 cut(s) 341, 349
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 2 cut(s) 452, 804
Bse3DI GCAATG 2 cut(s) 553, 708
BseAI TCCGGA 1 cut(s) 349
BseBI CCWGG 1 cut(s) 534
BseDI CCNNGG 1 cut(s) 798
BseGI GGATG 6 cut(s) 22, 338, 358, 668, 1017, 1101
BseLI CCNNNNNNNGG 2 cut(s) 452, 804
BseMI GCAATG 2 cut(s) 553, 708
BseMII CTCAG 2 cut(s) 159, 1076
BseRI GAGGAG 1 cut(s) 1064
Bsh1236I CGCG 1 cut(s) 1057
BshFI GGCC 2 cut(s) 96, 211
BsiHKAI GWGCWC 1 cut(s) 603
BsiHKCI CYCGRG 1 cut(s) 758
BsiSI CCGG 4 cut(s) 342, 350, 452, 800
BslI CCNNNNNNNGG 2 cut(s) 452, 804
BsmAI GTCTC 4 cut(s) 640, 699, 921, 1046
BsmBI CGTCTC 1 cut(s) 1046
BsnI GGCC 2 cut(s) 96, 211
BsoBI CYCGRG 1 cut(s) 758
Bsp1286I GDGCHC 2 cut(s) 603, 1063
Bsp13I TCCGGA 1 cut(s) 349
Bsp143I GATC 7 cut(s) 346, 424, 527, 604, 659, 746, 1074
BspANI GGCC 2 cut(s) 96, 211
BspCNI CTCAG 2 cut(s) 158, 1075
BspEI TCCGGA 1 cut(s) 349
BspFNI CGCG 1 cut(s) 1057
BspMI ACCTGC 1 cut(s) 289
BspPI GGATC 1 cut(s) 341
BspQI GCTCTTC 1 cut(s) 972
BsrDI GCAATG 2 cut(s) 553, 708
BssECI CCNNGG 1 cut(s) 798
BssMI GATC 7 cut(s) 346, 424, 527, 604, 659, 746, 1074
Bst2UI CCWGG 1 cut(s) 534
Bst4CI ACNGT 2 cut(s) 722, 1089
Bst6I CTCTTC 2 cut(s) 897, 972
BstC8I GCNNGC 2 cut(s) 840, 1059
BstDEI CTNAG 8 cut(s) 114, 137, 145, 515, 680, 788, 969, 1062
BstF5I GGATG 6 cut(s) 22, 338, 358, 668, 1017, 1101
BstFNI CGCG 1 cut(s) 1057
BstHHI GCGC 1 cut(s) 913
BstKTI GATC 7 cut(s) 349, 427, 530, 607, 662, 749, 1077
BstMAI GTCTC 4 cut(s) 640, 699, 921, 1046
BstMBI GATC 7 cut(s) 346, 424, 527, 604, 659, 746, 1074
BstMWI GCNNNNNNNGC 2 cut(s) 196, 281
BstNI CCWGG 1 cut(s) 534
BstSCI CCNGG 3 cut(s) 451, 532, 798
BstSFI CTRYAG 1 cut(s) 270
BstUI CGCG 1 cut(s) 1057
BsuRI GGCC 2 cut(s) 96, 211
BtsCI GGATG 6 cut(s) 22, 338, 358, 668, 1017, 1101
BtsIMutI CAGTG 1 cut(s) 773
BveI ACCTGC 1 cut(s) 289
Cac8I GCNNGC 2 cut(s) 840, 1059
CfoI GCGC 1 cut(s) 913
CseI GACGC 1 cut(s) 1063
CviAII CATG 3 cut(s) 56, 98, 950
DdeI CTNAG 8 cut(s) 114, 137, 145, 515, 680, 788, 969, 1062
DpnI GATC 7 cut(s) 348, 426, 529, 606, 661, 748, 1076
DpnII GATC 7 cut(s) 346, 424, 527, 604, 659, 746, 1074
DraI TTTAAA 1 cut(s) 1129
DrdI GACNNNNNNGTC 1 cut(s) 632
DriI GACNNNNNGTC 1 cut(s) 859
DseDI GACNNNNNNGTC 1 cut(s) 632
Eam1104I CTCTTC 2 cut(s) 897, 972
Eam1105I GACNNNNNGTC 1 cut(s) 859
EarI CTCTTC 2 cut(s) 897, 972
EciI GGCGGA 1 cut(s) 1057
Ecl136II GAGCTC 1 cut(s) 601
Eco147I AGGCCT 1 cut(s) 211
Eco24I GRGCYC 2 cut(s) 603, 1063
Eco53kI GAGCTC 1 cut(s) 601
Eco57I CTGAAG 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 758
EcoICRI GAGCTC 1 cut(s) 601
EcoRI GAATTC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 532
EcoT38I GRGCYC 2 cut(s) 603, 1063
Esp3I CGTCTC 1 cut(s) 1046
FaeI CATG 3 cut(s) 59, 101, 953
FaiI YATR 9 cut(s) 37, 39, 57, 99, 369, 677, 769, 951, 1145
FalI AAGNNNNNCTT 2 cut(s) 822, 854
FatI CATG 3 cut(s) 55, 97, 949
FauI CCCGC 1 cut(s) 1050
FbaI TGATCA 1 cut(s) 424
Fnu4HI GCNGC 2 cut(s) 490, 1040
FokI GGATG 6 cut(s) 9, 325, 365, 655, 1024, 1108
FriOI GRGCYC 2 cut(s) 603, 1063
Fsp4HI GCNGC 2 cut(s) 490, 1040
FspBI CTAG 1 cut(s) 498
FspI TGCGCA 1 cut(s) 912
GlaI GCGC 1 cut(s) 912
GluI GCNGC 2 cut(s) 490, 1040
HaeIII GGCC 2 cut(s) 96, 211
HapII CCGG 4 cut(s) 342, 350, 452, 800
HgaI GACGC 1 cut(s) 1063
HhaI GCGC 1 cut(s) 913
Hin1II CATG 3 cut(s) 59, 101, 953
Hin6I GCGC 1 cut(s) 911
HinP1I GCGC 1 cut(s) 911
HincII GTYRAC 1 cut(s) 795
HindII GTYRAC 1 cut(s) 795
HinfI GANTC 8 cut(s) 173, 501, 611, 654, 731, 737, 860, 1110
HpaII CCGG 4 cut(s) 342, 350, 452, 800
HphI GGTGA 2 cut(s) 356, 435
Hpy166II GTNNAC 2 cut(s) 795, 868
Hpy188I TCNGA 6 cut(s) 310, 562, 625, 659, 736, 1065
Hpy188III TCNNGA 8 cut(s) 26, 103, 350, 608, 643, 899, 920, 992
Hpy8I GTNNAC 2 cut(s) 795, 868
HpyAV CCTTC 6 cut(s) 163, 396, 479, 530, 958, 1012
HpyCH4III ACNGT 2 cut(s) 722, 1089
HpyCH4IV ACGT 2 cut(s) 751, 889
HpyCH4V TGCA 2 cut(s) 239, 781
HpyF10VI GCNNNNNNNGC 2 cut(s) 196, 281
HpyF3I CTNAG 8 cut(s) 114, 137, 145, 515, 680, 788, 969, 1062
HpySE526I ACGT 2 cut(s) 751, 889
Hsp92II CATG 3 cut(s) 59, 101, 953
HspAI GCGC 1 cut(s) 911
Kpn2I TCCGGA 1 cut(s) 349
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 7 cut(s) 346, 424, 527, 604, 659, 746, 1074
LguI GCTCTTC 1 cut(s) 972
LmnI GCTCC 1 cut(s) 280
LweI GCATC 2 cut(s) 768, 825
MaeI CTAG 1 cut(s) 498
MaeII ACGT 2 cut(s) 751, 889
MaeIII GTNAC 1 cut(s) 752
MalI GATC 7 cut(s) 348, 426, 529, 606, 661, 748, 1076
MboI GATC 7 cut(s) 346, 424, 527, 604, 659, 746, 1074
MhlI GDGCHC 2 cut(s) 603, 1063
MluCI AATT 6 cut(s) 84, 178, 247, 319, 415, 1124
MlyI GAGTC 4 cut(s) 182, 495, 663, 869
MnlI CCTC 6 cut(s) 221, 767, 939, 979, 1042, 1086
MroI TCCGGA 1 cut(s) 349
MseI TTAA 1 cut(s) 1128
MslI CAYNNNNRTG 1 cut(s) 60
MspI CCGG 4 cut(s) 342, 350, 452, 800
MspR9I CCNGG 3 cut(s) 453, 534, 800
MvaI CCWGG 1 cut(s) 534
MvnI CGCG 1 cut(s) 1057
MwoI GCNNNNNNNGC 2 cut(s) 196, 281
NciI CCSGG 2 cut(s) 453, 800
NdeII GATC 7 cut(s) 346, 424, 527, 604, 659, 746, 1074
NlaIII CATG 3 cut(s) 59, 101, 953
NsbI TGCGCA 1 cut(s) 912
PaeR7I CTCGAG 1 cut(s) 758
PaqCI CACCTGC 1 cut(s) 289
PceI AGGCCT 1 cut(s) 211
PciSI GCTCTTC 1 cut(s) 972
PfeI GAWTC 4 cut(s) 611, 731, 737, 1110
PkrI GCNGC 2 cut(s) 491, 1041
PleI GAGTC 4 cut(s) 181, 495, 662, 868
PpsI GAGTC 4 cut(s) 181, 495, 662, 868
Psp124BI GAGCTC 1 cut(s) 603
Psp6I CCWGG 1 cut(s) 532
PspGI CCWGG 1 cut(s) 532
PspXI VCTCGAGB 1 cut(s) 758
RseI CAYNNNNRTG 1 cut(s) 60
SacI GAGCTC 1 cut(s) 603
SapI GCTCTTC 1 cut(s) 972
SaqAI TTAA 1 cut(s) 1128
SatI GCNGC 2 cut(s) 490, 1040
Sau3AI GATC 7 cut(s) 346, 424, 527, 604, 659, 746, 1074
SchI GAGTC 4 cut(s) 182, 495, 663, 869
ScrFI CCNGG 3 cut(s) 453, 534, 800
SduI GDGCHC 2 cut(s) 603, 1063
SfaNI GCATC 2 cut(s) 768, 825
SfcI CTRYAG 1 cut(s) 270
Sfr274I CTCGAG 1 cut(s) 758
SlaI CTCGAG 1 cut(s) 758
SmiMI CAYNNNNRTG 1 cut(s) 60
SmlI CTYRAG 5 cut(s) 90, 758, 918, 983, 990
SmoI CTYRAG 5 cut(s) 90, 758, 918, 983, 990
Sse9I AATT 6 cut(s) 84, 178, 247, 319, 415, 1124
SseBI AGGCCT 1 cut(s) 211
SspMI CTAG 1 cut(s) 498
SstI GAGCTC 1 cut(s) 603
StuI AGGCCT 1 cut(s) 211
StyD4I CCNGG 3 cut(s) 451, 532, 798
TaaI ACNGT 2 cut(s) 722, 1089
TaiI ACGT 2 cut(s) 754, 892
TaqI TCGA 6 cut(s) 176, 603, 609, 693, 759, 1077
TasI AATT 6 cut(s) 84, 178, 247, 319, 415, 1124
TauI GCSGC 2 cut(s) 492, 1042
TfiI GAWTC 4 cut(s) 611, 731, 737, 1110
Tru1I TTAA 1 cut(s) 1128
Tru9I TTAA 1 cut(s) 1128
TscAI CASTG 1 cut(s) 780
TspDTI ATGAA 5 cut(s) 72, 251, 324, 396, 657
TspGWI ACGGA 3 cut(s) 277, 717, 1013
TspRI CASTG 1 cut(s) 780
XapI RAATTY 3 cut(s) 178, 319, 1124
XhoI CTCGAG 1 cut(s) 758
XspI CTAG 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.