Rh4AG317400

Arabidopsis phospholipase-like protein (PEARLI 4)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002091
Physical Location & Seq
Reverse (-)
62754455 .. 62754757
303 bp
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UTR
Exon/CDS
Intron
Rh4AG317400.1

Sequence Viewer

Length: 303 bp
ATGCTCAAGGATGTAGAATCTTCAGGATTGGATGTTGGTTGGCGTCGTCTCATGCTCGAATGTGCAGAATTCATTAATCTCGTGAGTCAGCATCGAGCATTCAAACTAGAAAAGGCCAACTGTGATCACGACAACGAATCATTAAGGAAAGAACTAGAAGCCCAAATGGAGGCTTTGGCTCTGAAAGAAAAGGAGGTTGCTGATGCCAAGAAGCAACTTTCTGAAACTAGAGCCTACCTGAGAGAGCTTGATCAGCTCAAATCATCTATTTTGAGCAAGACTGCTAGGCTTGTTAATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PEARLI-4

Protein Analysis

100

Amino Acids

11.49

Weight (kDa)

6.13

Isoelectric Point (pI)

35.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PEARLI-4 PF05278 2 - 93 1.9e-14 Arabidopsis phospholipase-like protein (PEARLI 4)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 68
AcuI CTGAAG 1 cut(s) 6
AcyI GRCGYC 1 cut(s) 43
AfiI CCNNNNNNNGG 1 cut(s) 169
AgsI TTSAA 1 cut(s) 103
AluBI AGCT 2 cut(s) 247, 256
AluI AGCT 2 cut(s) 247, 256
Alw26I GTCTC 1 cut(s) 53
AoxI GGCC 1 cut(s) 114
ApoI RAATTY 1 cut(s) 68
AseI ATTAAT 1 cut(s) 75
BauI CACGAG 1 cut(s) 80
BclI TGATCA 2 cut(s) 124, 250
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 4 cut(s) 107, 155, 228, 285
BmsI GCATC 2 cut(s) 100, 193
BsaHI GRCGYC 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 169
BseGI GGATG 2 cut(s) 16, 37
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 230
BsgI GTGCAG 1 cut(s) 84
BshFI GGCC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 53
BsmBI CGTCTC 1 cut(s) 53
BsmI GAATGC 1 cut(s) 98
BsnI GGCC 1 cut(s) 116
Bsp143I GATC 2 cut(s) 124, 250
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 231
BssMI GATC 2 cut(s) 124, 250
BssNI GRCGYC 1 cut(s) 43
BssSI CACGAG 1 cut(s) 80
Bst2BI CACGAG 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 122
BstACI GRCGYC 1 cut(s) 43
BstDEI CTNAG 1 cut(s) 239
BstF5I GGATG 2 cut(s) 16, 37
BstKTI GATC 2 cut(s) 127, 253
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 2 cut(s) 124, 250
BstMWI GCNNNNNNNGC 1 cut(s) 253
BsuRI GGCC 1 cut(s) 116
BtsCI GGATG 2 cut(s) 16, 37
CseI GACGC 1 cut(s) 32
CviAII CATG 1 cut(s) 52
CviJI RGCY 8 cut(s) 116, 161, 173, 179, 233, 247, 256, 289
CviKI_1 RGCY 8 cut(s) 116, 161, 173, 179, 233, 247, 256, 289
DdeI CTNAG 1 cut(s) 239
DpnI GATC 2 cut(s) 126, 252
DpnII GATC 2 cut(s) 124, 250
Eco57I CTGAAG 1 cut(s) 6
EcoRI GAATTC 1 cut(s) 68
Esp3I CGTCTC 1 cut(s) 53
FaeI CATG 1 cut(s) 55
FaiI YATR 1 cut(s) 53
FatI CATG 1 cut(s) 51
FbaI TGATCA 2 cut(s) 124, 250
FokI GGATG 2 cut(s) 23, 44
FspBI CTAG 4 cut(s) 107, 155, 228, 285
HaeIII GGCC 1 cut(s) 116
HgaI GACGC 1 cut(s) 32
Hin1I GRCGYC 1 cut(s) 43
Hin1II CATG 1 cut(s) 55
HinfI GANTC 3 cut(s) 17, 85, 137
Hpy188I TCNGA 2 cut(s) 183, 223
Hpy188III TCNNGA 3 cut(s) 24, 82, 128
Hpy99I CGWCG 1 cut(s) 48
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4V TGCA 1 cut(s) 65
HpyF10VI GCNNNNNNNGC 1 cut(s) 253
HpyF3I CTNAG 1 cut(s) 239
Hsp92I GRCGYC 1 cut(s) 43
Hsp92II CATG 1 cut(s) 55
Ksp22I TGATCA 2 cut(s) 124, 250
Kzo9I GATC 2 cut(s) 124, 250
LpnPI CCDG 2 cut(s) 9, 251
LweI GCATC 2 cut(s) 100, 193
MaeI CTAG 4 cut(s) 107, 155, 228, 285
MalI GATC 2 cut(s) 126, 252
MboI GATC 2 cut(s) 124, 250
MboII GAAGA 1 cut(s) 12
MluCI AATT 2 cut(s) 68, 295
MlyI GAGTC 1 cut(s) 94
MnlI CCTC 2 cut(s) 163, 187
MseI TTAA 3 cut(s) 75, 143, 294
Mva1269I GAATGC 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 253
NdeII GATC 2 cut(s) 124, 250
NlaIII CATG 1 cut(s) 55
PctI GAATGC 1 cut(s) 98
PfeI GAWTC 2 cut(s) 17, 137
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
PshBI ATTAAT 1 cut(s) 75
SaqAI TTAA 3 cut(s) 75, 143, 294
Sau3AI GATC 2 cut(s) 124, 250
SchI GAGTC 1 cut(s) 94
SetI ASST 4 cut(s) 198, 240, 249, 258
SfaNI GCATC 2 cut(s) 100, 193
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
Sse9I AATT 2 cut(s) 68, 295
SspMI CTAG 4 cut(s) 107, 155, 228, 285
TaaI ACNGT 1 cut(s) 122
TaqI TCGA 2 cut(s) 57, 94
TasI AATT 2 cut(s) 68, 295
TfiI GAWTC 2 cut(s) 17, 137
Tru1I TTAA 3 cut(s) 75, 143, 294
Tru9I TTAA 3 cut(s) 75, 143, 294
TspDTI ATGAA 1 cut(s) 61
VspI ATTAAT 1 cut(s) 75
XapI RAATTY 1 cut(s) 68
XspI CTAG 4 cut(s) 107, 155, 228, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.