Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003837.1

Orthogroup ID

OG0002091

Physical Location & Seq

Genomic Coordinates Reverse (-)

87040 .. 89530

Gene Structure 2491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003837.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

atggctggagagagaagagtggatgcaactagggcatctaatccttaccatcaatctggtcaatcttttccgaaaagaactgccggtggtgaagctcgtggggatataaaagaatcaggctccatacttgatgttcctatattgggtggacgaaaagagagatcccgaccaaagactcctcaagatcttgacaatgtatctgaccgaagtgcggtttatccttatgatgctcaatcatctccatctaaggacaaggtgaacgtagagaatgggtctgtccttgatgatcctatatttggaaaaagaaagccagtctcccaaacaaggtctgctgaagagcatgaaaatggtcaaggtgttgatccttcatcatttccagaaaagctgaaaatagagaacggctctgcccttgatgatcctatatttggcagaagaaagcaggtagcccagccaatgccccatgaagagcttgacaatggatccggtcaaggttcagttaatccttctggttctcccatgtctccatctaatgaaattgtgaaaatagggaatggctccactcttgatgatcttatatttggccgcaaaaagcagggatctgaaccaaagcctgaagaagagattgagaatgtacctgttgtgaaattagataatgatgagtataagtcttattctggaccgcttgctcaagtaaaagatccttctttgaacaagaagcaaatcaattcctctggggcagtgcctgcatctggaattatcaaaatgaccccctctctttctctccccacacacaatgttggagaaggtcccactgccacaccttctgaaaacagaagcttcagtttctcaggttctccctatgtttttgaagagagtgatgatgacgatgcacgatctgtcaattctgatgccagtgtttctgtgggaaagtaccgtgtgaaaggaagcttatgttccattctccagtcaatctttgacaagtatggtgatatagcagcaagctgtcaattggaatcaattgtcattcgctcttattacctcgagtgtgtctgttatgtggttcaagagttgaaacgcacttcggtgaagcagctgacaaagtcaaaagtcaaagaaatgtcagctatgctcaaggatgtagaatcttcaggaatggatgttggttggcttcgtctcatgctcaatgaatgtgcacaatccattgatctcgtgagtcagcatcgagcattcgaactagaaaaggccaactgtgatcgtggcattgaatcaataaggaaagaactagagtcccagatggaggctttggctctgaaagaaaaggaggttgctgatgccaagaagcaagtttctgaaaccagagcccatctgagggagcttgagctcaaatcatcttttttgagtgagactgttagtaatctgaagtccaaggttgaaaatcttcaaagcaaatcattgctggacaaggtcttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEARLI-4

Protein Analysis

490

Amino Acids

53.58

Weight (kDa)

5.59

Isoelectric Point (pI)

56.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16900 AT2G16900 AT2G16900 AT2G16900 AT2G16900 AT2G16900 AT2G16900 AT4G35110 AT4G35110 AT4G35110 AT4G35110 AT4G35110 AT4G35110
fragaria_vesca	FvH4_2g15450 FvH4_2g15450 FvH4_2g15450 FvH4_2g15450 FvH4_2g15450
malus_domestica	MD05G1122800.v1.1 MD10G1125400.v1.1
prunus_persica	Prupe.8G166700_v2.0.a1 Prupe.8G166700_v2.0.a1 Prupe.8G166700_v2.0.a1 Prupe.8G166700_v2.0.a1 Prupe.8G166700_v2.0.a1
pyrus_communis	pycom05g11710 pycom10g10800
rosa_chinensis	RchiOBHm_Chr6g0278421 RchiOBHm_Chr6g0278431
rosa_laevigata	RLG00000013229
rosa_multiflora	Rmu_sc0003837.1_g000016 Rmu_sc0005234.1_g000009
rosa_roxburghii	Rroxscaffold_7G00189890 Rroxscaffold_7G00190360
rosa_rugosa	Rorug06G0116900
rosa_samantha	Rh4AG317400 Rh4BG325600 Rh4CG340600 Rh4DG320800 Rh6AG226200 Rh6BG230300 Rh6CG233500 Rh6DG224800
rosa_wichuraiana	Rw6G019730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	430
AciI	CCGC	3 cut(s)	212, 583, 680
AclWI	GGATC	8 cut(s)	156, 281, 356, 410, 474, 487, 604, 692
AcoI	YGGCCR	1 cut(s)	580
AcuI	CTGAAG	5 cut(s)	354, 633, 823, 1131, 1439
AfaI	GTAC	2 cut(s)	633, 932
AfiI	CCNNNNNNNGG	9 cut(s)	143, 211, 296, 324, 425, 749, 1297, 1368, 1369
AgsI	TTSAA	7 cut(s)	709, 869, 1064, 1072, 1265, 1433, 1442
AleI	CACNNNNGTG	1 cut(s)	1082
Alw21I	GWGCWC	2 cut(s)	1195, 1383
Alw26I	GTCTC	4 cut(s)	319, 525, 1178, 1397
Alw44I	GTGCAC	1 cut(s)	1191
AlwI	GGATC	8 cut(s)	156, 281, 356, 410, 474, 487, 604, 692
AlwNI	CAGNNNCTG	1 cut(s)	743
Ama87I	CYCGRG	1 cut(s)	1040
AoxI	GGCC	2 cut(s)	580, 1242
ApaLI	GTGCAC	1 cut(s)	1191
ApeKI	GCWGC	2 cut(s)	995, 1090
Asp700I	GAANNNNTTC	1 cut(s)	1437
AspS9I	GGNCC	2 cut(s)	677, 806
AsuHPI	GGTGA	4 cut(s)	101, 268, 998, 1096
AsuII	TTCGAA	1 cut(s)	1230
AvaI	CYCGRG	1 cut(s)	1040
AvaII	GGWCC	2 cut(s)	677, 806
BaeGI	GKGCMC	1 cut(s)	1195
BamHI	GGATCC	1 cut(s)	479
BanII	GRGCYC	2 cut(s)	1363, 1383
BauI	CACGAG	2 cut(s)	96, 1208
Bbv12I	GWGCWC	2 cut(s)	1195, 1383
BbvI	GCAGC	2 cut(s)	1007, 1102
BccI	CCATC	5 cut(s)	57, 250, 532, 1288, 1371
BceAI	ACGGC	1 cut(s)	415
BcoDI	GTCTC	4 cut(s)	319, 525, 1178, 1397
BfaI	CTAG	3 cut(s)	30, 1235, 1283
BfuAI	ACCTGC	1 cut(s)	430
BglII	AGATCT	1 cut(s)	184
BisI	GCNGC	3 cut(s)	583, 996, 1091
BlsI	GCNGC	3 cut(s)	584, 997, 1092
Bme18I	GGWCC	2 cut(s)	677, 806
BmeT110I	CYCGRG	1 cut(s)	1040
BmgT120I	GGNCC	2 cut(s)	677, 806
BmiI	GGNNCC	4 cut(s)	121, 481, 556, 808
BmsI	GCATC	8 cut(s)	13, 44, 217, 755, 877, 898, 1228, 1321
BplI	GAGNNNNNCTC	2 cut(s)	386, 418
BpmI	CTGGAG	2 cut(s)	27, 947
Bpu14I	TTCGAA	1 cut(s)	1230
BpuEI	CTTGAG	4 cut(s)	165, 672, 1115, 1397
BsaJI	CCNNGG	1 cut(s)	1425
BsaWI	WCCGGW	1 cut(s)	482
Bsc4I	CCNNNNNNNGG	9 cut(s)	143, 211, 296, 324, 425, 749, 1297, 1368, 1369
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	3 cut(s)	311, 912, 964
Bse3DI	GCAATG	1 cut(s)	1451
BseDI	CCNNGG	1 cut(s)	1425
BseGI	GGATG	3 cut(s)	28, 1141, 1162
BseLI	CCNNNNNNNGG	9 cut(s)	143, 211, 296, 324, 425, 749, 1297, 1368, 1369
BseMI	GCAATG	1 cut(s)	1451
BseMII	CTCAG	2 cut(s)	861, 1358
BseNI	ACTGG	3 cut(s)	311, 912, 964
BseRI	GAGGAG	1 cut(s)	168
BseSI	GKGCMC	1 cut(s)	1195
BseXI	GCAGC	2 cut(s)	1007, 1102
BseYI	CCCAGC	1 cut(s)	447
BshFI	GGCC	2 cut(s)	582, 1244
BsiHKAI	GWGCWC	2 cut(s)	1195, 1383
BsiHKCI	CYCGRG	1 cut(s)	1040
BsiSI	CCGG	2 cut(s)	84, 483
BslFI	GGGAC	2 cut(s)	792, 1273
BslI	CCNNNNNNNGG	9 cut(s)	143, 211, 296, 324, 425, 749, 1297, 1368, 1369
BsmAI	GTCTC	4 cut(s)	319, 525, 1178, 1397
BsmBI	CGTCTC	1 cut(s)	1178
BsmFI	GGGAC	2 cut(s)	792, 1273
BsmI	GAATGC	1 cut(s)	1226
BsnI	GGCC	2 cut(s)	582, 1244
BsoBI	CYCGRG	1 cut(s)	1040
Bsp119I	TTCGAA	1 cut(s)	1230
Bsp1286I	GDGCHC	3 cut(s)	1195, 1363, 1383
BspACI	CCGC	3 cut(s)	212, 583, 680
BspANI	GGCC	2 cut(s)	582, 1244
BspCNI	CTCAG	2 cut(s)	860, 1359
BspLI	GGNNCC	4 cut(s)	121, 481, 556, 808
BspMI	ACCTGC	1 cut(s)	430
BspPI	GGATC	8 cut(s)	156, 281, 356, 410, 474, 487, 604, 692
BspQI	GCTCTTC	2 cut(s)	330, 459
BspT104I	TTCGAA	1 cut(s)	1230
BsrDI	GCAATG	1 cut(s)	1451
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	3 cut(s)	311, 912, 964
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	1425
BssSI	CACGAG	2 cut(s)	96, 1208
BssT1I	CCWWGG	1 cut(s)	1425
Bst2BI	CACGAG	2 cut(s)	96, 1208
Bst4CI	ACNGT	3 cut(s)	935, 1250, 1408
Bst6I	CTCTTC	5 cut(s)	10, 330, 459, 612, 864
BstAPI	GCANNNNNTGC	1 cut(s)	743
BstBI	TTCGAA	1 cut(s)	1230
BstC8I	GCNNGC	3 cut(s)	684, 744, 1000
BstDEI	CTNAG	3 cut(s)	246, 847, 1367
BstF5I	GGATG	3 cut(s)	28, 1141, 1162
BstMAI	GTCTC	4 cut(s)	319, 525, 1178, 1397
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 743
BstSLI	GKGCMC	1 cut(s)	1195
BstV1I	GCAGC	2 cut(s)	1007, 1102
BstX2I	RGATCY	5 cut(s)	161, 184, 479, 596, 697
BstXI	CCANNNNNNTGG	1 cut(s)	56
BstYI	RGATCY	5 cut(s)	161, 184, 479, 596, 697
BsuRI	GGCC	2 cut(s)	582, 1244
BtsCI	GGATG	3 cut(s)	28, 1141, 1162
BtsI	GCAGTG	2 cut(s)	744, 810
BtsIMutI	CAGTG	3 cut(s)	744, 810, 919
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	3 cut(s)	684, 744, 1000
CaiI	CAGNNNCTG	1 cut(s)	743
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	2 cut(s)	677, 806
Csp6I	GTAC	2 cut(s)	632, 931
CviAII	CATG	4 cut(s)	341, 461, 517, 1177
CviQI	GTAC	2 cut(s)	632, 931
DdeI	CTNAG	3 cut(s)	246, 847, 1367
EaeI	YGGCCR	1 cut(s)	580
Eam1104I	CTCTTC	5 cut(s)	10, 330, 459, 612, 864
EarI	CTCTTC	5 cut(s)	10, 330, 459, 612, 864
Ecl136II	GAGCTC	1 cut(s)	1381
Eco130I	CCWWGG	1 cut(s)	1425
Eco24I	GRGCYC	2 cut(s)	1363, 1383
Eco47I	GGWCC	2 cut(s)	677, 806
Eco53kI	GAGCTC	1 cut(s)	1381
Eco57I	CTGAAG	5 cut(s)	354, 633, 823, 1131, 1439
Eco88I	CYCGRG	1 cut(s)	1040
EcoICRI	GAGCTC	1 cut(s)	1381
EcoO109I	RGGNCCY	1 cut(s)	806
EcoT14I	CCWWGG	1 cut(s)	1425
EcoT38I	GRGCYC	2 cut(s)	1363, 1383
ErhI	CCWWGG	1 cut(s)	1425
Esp3I	CGTCTC	1 cut(s)	1178
FaeI	CATG	4 cut(s)	344, 464, 520, 1180
FaqI	GGGAC	2 cut(s)	792, 1273
FatI	CATG	4 cut(s)	340, 460, 516, 1176
Fnu4HI	GCNGC	3 cut(s)	583, 996, 1091
FokI	GGATG	3 cut(s)	35, 1148, 1169
FriOI	GRGCYC	2 cut(s)	1363, 1383
Fsp4HI	GCNGC	3 cut(s)	583, 996, 1091
FspBI	CTAG	3 cut(s)	30, 1235, 1283
GluI	GCNGC	3 cut(s)	583, 996, 1091
GsaI	CCCAGC	1 cut(s)	451
GsuI	CTGGAG	2 cut(s)	27, 947
HaeIII	GGCC	2 cut(s)	582, 1244
HapII	CCGG	2 cut(s)	84, 483
Hin1II	CATG	4 cut(s)	344, 464, 520, 1180
HindIII	AAGCTT	2 cut(s)	835, 946
HinfI	GANTC	7 cut(s)	113, 175, 1013, 1142, 1213, 1265, 1286
HpaII	CCGG	2 cut(s)	84, 483
HphI	GGTGA	4 cut(s)	101, 268, 998, 1096
Hpy166II	GTNNAC	3 cut(s)	149, 259, 1193
Hpy188I	TCNGA	9 cut(s)	72, 202, 601, 826, 907, 1311, 1351, 1368, 1419
Hpy8I	GTNNAC	3 cut(s)	149, 259, 1193
HpyAV	CCTTC	5 cut(s)	375, 513, 711, 797, 831
HpyCH4III	ACNGT	3 cut(s)	935, 1250, 1408
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	4 cut(s)	26, 746, 890, 1193
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 743
HpyF3I	CTNAG	3 cut(s)	246, 847, 1367
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	4 cut(s)	344, 464, 520, 1180
LguI	GCTCTTC	2 cut(s)	330, 459
LmnI	GCTCC	3 cut(s)	125, 560, 1372
Lsp1109I	GCAGC	2 cut(s)	1007, 1102
LweI	GCATC	8 cut(s)	13, 44, 217, 755, 877, 898, 1228, 1321
MaeI	CTAG	3 cut(s)	30, 1235, 1283
MaeII	ACGT	1 cut(s)	261
MboII	GAAGA	9 cut(s)	27, 347, 444, 476, 626, 629, 881, 1137, 1430
MfeI	CAATTG	2 cut(s)	1007, 1017
MflI	RGATCY	5 cut(s)	161, 184, 479, 596, 697
MhlI	GDGCHC	3 cut(s)	1195, 1363, 1383
MluCI	AATT	7 cut(s)	534, 644, 724, 753, 901, 1007, 1017
MlyI	GAGTC	3 cut(s)	169, 1222, 1295
MmeI	TCCRAC	1 cut(s)	778
MnlI	CCTC	7 cut(s)	189, 739, 781, 1049, 1291, 1315, 1362
MroXI	GAANNNNTTC	1 cut(s)	1437
MseI	TTAA	1 cut(s)	498
MslI	CAYNNNNRTG	2 cut(s)	345, 1082
MspA1I	CMGCKG	1 cut(s)	1093
MspI	CCGG	2 cut(s)	84, 483
MunI	CAATTG	2 cut(s)	1007, 1017
Mva1269I	GAATGC	1 cut(s)	1226
MwoI	GCNNNNNNNGC	2 cut(s)	32, 743
NlaIII	CATG	4 cut(s)	344, 464, 520, 1180
NlaIV	GGNNCC	4 cut(s)	121, 481, 556, 808
NspV	TTCGAA	1 cut(s)	1230
OliI	CACNNNNGTG	1 cut(s)	1082
PaeR7I	CTCGAG	1 cut(s)	1040
PciSI	GCTCTTC	2 cut(s)	330, 459
PctI	GAATGC	1 cut(s)	1226
PdmI	GAANNNNTTC	1 cut(s)	1437
PfeI	GAWTC	4 cut(s)	113, 1013, 1142, 1265
PflFI	GACNNNGTC	2 cut(s)	1099, 1463
PkrI	GCNGC	3 cut(s)	584, 997, 1092
PleI	GAGTC	3 cut(s)	169, 1221, 1294
PpsI	GAGTC	3 cut(s)	169, 1221, 1294
PpuMI	RGGWCCY	1 cut(s)	806
Psp124BI	GAGCTC	1 cut(s)	1383
Psp5II	RGGWCCY	1 cut(s)	806
PspFI	CCCAGC	1 cut(s)	447
PspN4I	GGNNCC	4 cut(s)	121, 481, 556, 808
PspPI	GGNCC	2 cut(s)	677, 806
PspPPI	RGGWCCY	1 cut(s)	806
PspXI	VCTCGAGB	1 cut(s)	1040
PstNI	CAGNNNCTG	1 cut(s)	743
PsuI	RGATCY	5 cut(s)	161, 184, 479, 596, 697
PsyI	GACNNNGTC	2 cut(s)	1099, 1463
PvuII	CAGCTG	1 cut(s)	1093
RsaI	GTAC	2 cut(s)	633, 932
RsaNI	GTAC	2 cut(s)	632, 931
RseI	CAYNNNNRTG	2 cut(s)	345, 1082
SacI	GAGCTC	1 cut(s)	1383
SapI	GCTCTTC	2 cut(s)	330, 459
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	3 cut(s)	583, 996, 1091
Sau96I	GGNCC	2 cut(s)	677, 806
SchI	GAGTC	3 cut(s)	169, 1222, 1295
SduI	GDGCHC	3 cut(s)	1195, 1363, 1383
SfaNI	GCATC	8 cut(s)	13, 44, 217, 755, 877, 898, 1228, 1321
Sfr274I	CTCGAG	1 cut(s)	1040
SfuI	TTCGAA	1 cut(s)	1230
SinI	GGWCC	2 cut(s)	677, 806
SlaI	CTCGAG	1 cut(s)	1040
SmiMI	CAYNNNNRTG	2 cut(s)	345, 1082
SmlI	CTYRAG	5 cut(s)	180, 687, 1040, 1130, 1376
SmoI	CTYRAG	5 cut(s)	180, 687, 1040, 1130, 1376
Sse9I	AATT	7 cut(s)	534, 644, 724, 753, 901, 1007, 1017
SsiI	CCGC	3 cut(s)	212, 583, 680
SspMI	CTAG	3 cut(s)	30, 1235, 1283
SstI	GAGCTC	1 cut(s)	1383
StyI	CCWWGG	1 cut(s)	1425
TaaI	ACNGT	3 cut(s)	935, 1250, 1408
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	3 cut(s)	1041, 1222, 1230
TaqII	GACCGA	1 cut(s)	219
TasI	AATT	7 cut(s)	534, 644, 724, 753, 901, 1007, 1017
TauI	GCSGC	1 cut(s)	585
TfiI	GAWTC	4 cut(s)	113, 1013, 1142, 1265
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	3 cut(s)	744, 817, 919
TseI	GCWGC	2 cut(s)	995, 1090
TspDTI	ATGAA	5 cut(s)	357, 357, 477, 546, 1200
TspRI	CASTG	3 cut(s)	744, 817, 919
Tth111I	GACNNNGTC	2 cut(s)	1099, 1463
VneI	GTGCAC	1 cut(s)	1191
VpaK11BI	GGWCC	2 cut(s)	677, 806
XcmI	CCANNNNNNNNNTGG	1 cut(s)	919
XhoI	CTCGAG	1 cut(s)	1040
XmnI	GAANNNNTTC	1 cut(s)	1437
XspI	CTAG	3 cut(s)	30, 1235, 1283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.