Rh4CG340600

Arabidopsis phospholipase-like protein (PEARLI 4)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0002091
Physical Location & Seq
Reverse (-)
59999647 .. 59999991
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG340600.1

Sequence Viewer

Length: 345 bp
ATGCCCTTCGGTGATGCAGTTGACAAAGTCAAAGAATTGTCGACTATGCTCAAGGATGTAGAATCTTCAGGAATGGATGTTGGTTGGCGTCGTCTCATGCTCGAATGTGCAGAATTCATTGATCTCGTGAGTCAGCATCGAGCATTCAAACTAGAAAAGGCCAACTGTGATCACGACAACGAATCATTAAGGAAAGAACTAGAATCCCAAATGGAGGCCTTGGCTCTGAAAGAAAAGGAGGTTGCTGATGCCAAGAAGCAACTTTCTGAAACTAGAGCCTATCTGAGAGAGCTTGAGCTCAAATCATCTATTTTGAGTAAGACTGCTAGGCTTGTTAATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PEARLI-4

Protein Analysis

114

Amino Acids

13.03

Weight (kDa)

5.48

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PEARLI-4 PF05278 9 - 110 1.8e-17 Arabidopsis phospholipase-like protein (PEARLI 4)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 41
AcsI RAATTY 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 51
AcyI GRCGYC 1 cut(s) 88
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 1 cut(s) 148
AluBI AGCT 2 cut(s) 292, 298
AluI AGCT 2 cut(s) 292, 298
Alw21I GWGCWC 1 cut(s) 300
Alw26I GTCTC 1 cut(s) 98
AoxI GGCC 2 cut(s) 159, 216
ApoI RAATTY 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 23
BanII GRGCYC 1 cut(s) 300
BauI CACGAG 1 cut(s) 125
Bbv12I GWGCWC 1 cut(s) 300
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 4 cut(s) 152, 200, 273, 327
BmsI GCATC 3 cut(s) 4, 145, 238
BpuEI CTTGAG 2 cut(s) 35, 314
BsaHI GRCGYC 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 219
Bsc4I CCNNNNNNNGG 1 cut(s) 214
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 2 cut(s) 61, 82
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 275
BsgI GTGCAG 1 cut(s) 129
BshFI GGCC 2 cut(s) 161, 218
BsiHKAI GWGCWC 1 cut(s) 300
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 98
BsmBI CGTCTC 1 cut(s) 98
BsmI GAATGC 1 cut(s) 143
BsnI GGCC 2 cut(s) 161, 218
Bsp1286I GDGCHC 1 cut(s) 300
Bsp143I GATC 2 cut(s) 121, 169
BspANI GGCC 2 cut(s) 161, 218
BspCNI CTCAG 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 2 cut(s) 121, 169
BssNI GRCGYC 1 cut(s) 88
BssSI CACGAG 1 cut(s) 125
BssT1I CCWWGG 1 cut(s) 219
Bst2BI CACGAG 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 167
BstACI GRCGYC 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 284
BstF5I GGATG 2 cut(s) 61, 82
BstKTI GATC 2 cut(s) 124, 172
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 2 cut(s) 121, 169
BsuRI GGCC 2 cut(s) 161, 218
BtsCI GGATG 2 cut(s) 61, 82
CseI GACGC 1 cut(s) 77
CviAII CATG 1 cut(s) 97
CviJI RGCY 7 cut(s) 161, 218, 224, 278, 292, 298, 331
CviKI_1 RGCY 7 cut(s) 161, 218, 224, 278, 292, 298, 331
DdeI CTNAG 1 cut(s) 284
DpnI GATC 2 cut(s) 123, 171
DpnII GATC 2 cut(s) 121, 169
Ecl136II GAGCTC 1 cut(s) 298
Eco130I CCWWGG 1 cut(s) 219
Eco147I AGGCCT 1 cut(s) 218
Eco24I GRGCYC 1 cut(s) 300
Eco53kI GAGCTC 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 298
EcoRI GAATTC 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 219
EcoT38I GRGCYC 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 219
Esp3I CGTCTC 1 cut(s) 98
FaeI CATG 1 cut(s) 100
FaiI YATR 2 cut(s) 47, 98
FatI CATG 1 cut(s) 96
FbaI TGATCA 1 cut(s) 169
FblI GTMKAC 1 cut(s) 41
FokI GGATG 2 cut(s) 68, 89
FriOI GRGCYC 1 cut(s) 300
FspBI CTAG 4 cut(s) 152, 200, 273, 327
HaeIII GGCC 2 cut(s) 161, 218
HgaI GACGC 1 cut(s) 77
Hin1I GRCGYC 1 cut(s) 88
Hin1II CATG 1 cut(s) 100
HincII GTYRAC 2 cut(s) 22, 42
HindII GTYRAC 2 cut(s) 22, 42
HinfI GANTC 4 cut(s) 62, 130, 182, 203
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 2 cut(s) 22, 42
Hpy188I TCNGA 3 cut(s) 228, 268, 285
Hpy188III TCNNGA 3 cut(s) 69, 127, 173
Hpy8I GTNNAC 2 cut(s) 22, 42
Hpy99I CGWCG 1 cut(s) 93
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4V TGCA 2 cut(s) 17, 110
HpyF3I CTNAG 1 cut(s) 284
Hsp92I GRCGYC 1 cut(s) 88
Hsp92II CATG 1 cut(s) 100
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 2 cut(s) 121, 169
LpnPI CCDG 1 cut(s) 54
LweI GCATC 3 cut(s) 4, 145, 238
MaeI CTAG 4 cut(s) 152, 200, 273, 327
MalI GATC 2 cut(s) 123, 171
MboI GATC 2 cut(s) 121, 169
MboII GAAGA 1 cut(s) 57
MhlI GDGCHC 1 cut(s) 300
MluCI AATT 3 cut(s) 35, 113, 337
MlyI GAGTC 1 cut(s) 139
MnlI CCTC 2 cut(s) 208, 232
MseI TTAA 2 cut(s) 188, 336
Mva1269I GAATGC 1 cut(s) 143
NdeII GATC 2 cut(s) 121, 169
NlaIII CATG 1 cut(s) 100
PceI AGGCCT 1 cut(s) 218
PctI GAATGC 1 cut(s) 143
PfeI GAWTC 3 cut(s) 62, 182, 203
PflFI GACNNNGTC 1 cut(s) 26
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
Psp124BI GAGCTC 1 cut(s) 300
PsyI GACNNNGTC 1 cut(s) 26
SacI GAGCTC 1 cut(s) 300
SalI GTCGAC 1 cut(s) 40
SaqAI TTAA 2 cut(s) 188, 336
Sau3AI GATC 2 cut(s) 121, 169
SchI GAGTC 1 cut(s) 139
SduI GDGCHC 1 cut(s) 300
SetI ASST 3 cut(s) 243, 294, 300
SfaNI GCATC 3 cut(s) 4, 145, 238
SmlI CTYRAG 2 cut(s) 50, 293
SmoI CTYRAG 2 cut(s) 50, 293
Sse9I AATT 3 cut(s) 35, 113, 337
SseBI AGGCCT 1 cut(s) 218
SspMI CTAG 4 cut(s) 152, 200, 273, 327
SstI GAGCTC 1 cut(s) 300
StuI AGGCCT 1 cut(s) 218
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 167
TaqI TCGA 3 cut(s) 41, 102, 139
TasI AATT 3 cut(s) 35, 113, 337
TfiI GAWTC 3 cut(s) 62, 182, 203
Tru1I TTAA 2 cut(s) 188, 336
Tru9I TTAA 2 cut(s) 188, 336
TspDTI ATGAA 1 cut(s) 106
Tth111I GACNNNGTC 1 cut(s) 26
XapI RAATTY 1 cut(s) 113
XmiI GTMKAC 1 cut(s) 41
XspI CTAG 4 cut(s) 152, 200, 273, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.