AT2G19350

Eukaryotic protein of unknown function (DUF872)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002326
Physical Location & Seq
Forward (+)
8376155 .. 8377356
1202 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G19350.1

Sequence Viewer

Length: 312 bp
ATGGCATACGTCGACCATGCGTTCTCGATATCGGACGAAGACCTAATGATTGGGACTTCGTACACCGTCAGTAATCGACCACCGGTGAAGGAGATCTCACTCGCGGTGGGTCTACTCGTATTCGGAACCCTAGGAATTGTTTTAGGTTTCTTCATGGCGTATAACCGTGTTGGTGGTGATCGAGGTCACGGGATTTTCTTCATTGTACTGGGATGTCTACTGTTTATCCCGGGGTTTTACTATACACGGATTGCATATTACGCTTACAAAGGATACAAAGGTTTCTCTTTCTCAAATATACCATCCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF872

Protein Analysis

103

Amino Acids

11.39

Weight (kDa)

7.85

Isoelectric Point (pI)

23.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM_230_134 PF05915 29 - 102 1.3e-16 Transmembrane proteins 230/134
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 12, 112, 217
AccII CGCG 1 cut(s) 104
AciI CCGC 1 cut(s) 104
AfaI GTAC 2 cut(s) 62, 207
AgeI ACCGGT 1 cut(s) 82
Ama87I CYCGRG 1 cut(s) 229
AsiGI ACCGGT 1 cut(s) 82
AspA2I CCTAGG 1 cut(s) 130
AsuC2I CCSGG 2 cut(s) 230, 231
AsuHPI GGTGA 2 cut(s) 97, 188
AvaI CYCGRG 1 cut(s) 229
AvrII CCTAGG 1 cut(s) 130
BaeI ACNNNNGTAYC 2 cut(s) 265, 298
BbsI GAAGAC 1 cut(s) 45
BccI CCATC 1 cut(s) 310
BciVI GTATCC 1 cut(s) 266
BcnI CCSGG 2 cut(s) 230, 231
BfaI CTAG 1 cut(s) 131
BfuI GTATCC 1 cut(s) 266
BglII AGATCT 1 cut(s) 93
BlnI CCTAGG 1 cut(s) 130
Bme1390I CCNGG 2 cut(s) 230, 231
BmeT110I CYCGRG 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 127
BmrFI CCNGG 2 cut(s) 230, 231
BmrI ACTGGG 1 cut(s) 218
BmuI ACTGGG 1 cut(s) 218
BpiI GAAGAC 1 cut(s) 45
BpuMI CCSGG 2 cut(s) 230, 231
BsaJI CCNNGG 3 cut(s) 130, 229, 230
BsaWI WCCGGW 1 cut(s) 82
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 213
BseDI CCNNGG 3 cut(s) 130, 229, 230
BseGI GGATG 2 cut(s) 218, 302
BseNI ACTGG 1 cut(s) 213
Bsh1236I CGCG 1 cut(s) 104
BshTI ACCGGT 1 cut(s) 82
BsiHKCI CYCGRG 1 cut(s) 229
BsiSI CCGG 2 cut(s) 83, 230
BslFI GGGAC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 67
BsoBI CYCGRG 1 cut(s) 229
Bsp143I GATC 2 cut(s) 93, 178
BspACI CCGC 1 cut(s) 104
BspFNI CGCG 1 cut(s) 104
BspLI GGNNCC 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 82
BsrI ACTGG 1 cut(s) 213
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 3 cut(s) 130, 229, 230
BssMI GATC 2 cut(s) 93, 178
BssT1I CCWWGG 1 cut(s) 130
Bst4CI ACNGT 3 cut(s) 67, 167, 222
BstF5I GGATG 2 cut(s) 218, 302
BstFNI CGCG 1 cut(s) 104
BstKTI GATC 2 cut(s) 96, 181
BstMBI GATC 2 cut(s) 93, 178
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstSCI CCNGG 2 cut(s) 228, 229
BstUI CGCG 1 cut(s) 104
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BsuI GTATCC 1 cut(s) 266
BtsCI GGATG 2 cut(s) 218, 302
Cfr10I RCCGGY 1 cut(s) 82
Cfr9I CCCGGG 1 cut(s) 229
Csp6I GTAC 2 cut(s) 61, 206
CspAI ACCGGT 1 cut(s) 82
CviAII CATG 2 cut(s) 17, 154
CviQI GTAC 2 cut(s) 61, 206
DpnI GATC 2 cut(s) 95, 180
DpnII GATC 2 cut(s) 93, 178
Eco130I CCWWGG 1 cut(s) 130
Eco32I GATATC 1 cut(s) 30
Eco88I CYCGRG 1 cut(s) 229
EcoRV GATATC 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 2 cut(s) 20, 157
FaiI YATR 7 cut(s) 7, 18, 155, 162, 243, 256, 299
FaqI GGGAC 1 cut(s) 67
FatI CATG 2 cut(s) 16, 153
FblI GTMKAC 3 cut(s) 12, 112, 217
FokI GGATG 2 cut(s) 225, 289
FspBI CTAG 1 cut(s) 131
HapII CCGG 2 cut(s) 83, 230
Hin1II CATG 2 cut(s) 20, 157
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HpaII CCGG 2 cut(s) 83, 230
HphI GGTGA 2 cut(s) 97, 188
Hpy166II GTNNAC 4 cut(s) 13, 63, 113, 218
Hpy188I TCNGA 2 cut(s) 34, 125
Hpy188III TCNNGA 1 cut(s) 25
Hpy8I GTNNAC 4 cut(s) 13, 63, 113, 218
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 3 cut(s) 67, 167, 222
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 2 cut(s) 20, 157
Kzo9I GATC 2 cut(s) 93, 178
LpnPI CCDG 3 cut(s) 96, 194, 243
MaeI CTAG 1 cut(s) 131
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 185
MalI GATC 2 cut(s) 95, 180
MboI GATC 2 cut(s) 93, 178
MboII GAAGA 3 cut(s) 50, 142, 190
MflI RGATCY 1 cut(s) 93
MluCI AATT 1 cut(s) 135
MnlI CCTC 1 cut(s) 176
MseI TTAA 1 cut(s) 310
MspI CCGG 2 cut(s) 83, 230
MspR9I CCNGG 2 cut(s) 230, 231
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 260
NciI CCSGG 2 cut(s) 230, 231
NdeII GATC 2 cut(s) 93, 178
NlaIII CATG 2 cut(s) 20, 157
NlaIV GGNNCC 1 cut(s) 127
NmuCI GTSAC 1 cut(s) 185
PinAI ACCGGT 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 127
PsuI RGATCY 1 cut(s) 93
RsaI GTAC 2 cut(s) 62, 207
RsaNI GTAC 2 cut(s) 61, 206
SalI GTCGAC 1 cut(s) 11
SaqAI TTAA 1 cut(s) 310
Sau3AI GATC 2 cut(s) 93, 178
ScrFI CCNGG 2 cut(s) 230, 231
SetI ASST 5 cut(s) 12, 45, 148, 187, 283
SgrAI CRCCGGYG 1 cut(s) 82
SmaI CCCGGG 1 cut(s) 231
Sse9I AATT 1 cut(s) 135
SsiI CCGC 1 cut(s) 104
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 2 cut(s) 228, 229
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 3 cut(s) 67, 167, 222
TaiI ACGT 1 cut(s) 12
TaqI TCGA 4 cut(s) 12, 26, 76, 181
TasI AATT 1 cut(s) 135
TatI WGTACW 1 cut(s) 205
Tru1I TTAA 1 cut(s) 310
Tru9I TTAA 1 cut(s) 310
TseFI GTSAC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 2 cut(s) 142, 190
TspGWI ACGGA 2 cut(s) 262, 295
TspMI CCCGGG 1 cut(s) 229
XmaI CCCGGG 1 cut(s) 229
XmaJI CCTAGG 1 cut(s) 130
XmiI GTMKAC 3 cut(s) 12, 112, 217
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.