Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002326

Physical Location & Seq

Genomic Coordinates Reverse (-)

18107411 .. 18107776

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g20370.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGATGATGGAGGACTCATACACAGTCAACAACAAGCCTCCCATCAAGGAGATCGCCCTTGCCCTCGCCCTCCTCGTCACCGGCACCCTCGGCCTTGTTATCGGCATCCTCATGGCCTATAACCATGTCGGCGGCGACAAAGCTCACGGGTTATTTTTTGCAATACTTGGTGGGATCTTGTTTCTTCCGAGATTCTATTACACACGGATTGCTTACTATGCGTATAAAGGGTACAAGGGCTTCTCTTTCTCCAACATTCCACTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF872

Protein Analysis

90

Amino Acids

9.86

Weight (kDa)

9.26

Isoelectric Point (pI)

30.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19350 AT4G29850
fragaria_vesca	FvH4_4g06710 FvH4_4g06710 FvH4_4g06710 FvH4_4g06710 FvH4_4g06710 FvH4_4g06710
malus_domestica	MD13G1237400.v1.1 MD16G1242800.v1.1
prunus_persica	Prupe.1G069900_v2.0.a1
pyrus_communis	pycom16g20370
rosa_chinensis	RchiOBHm_Chr2g0106271 RchiOBHm_Chr3g0494811 RchiOBHm_Chr4g0391941 RchiOBHm_Chr4g0398651
rosa_laevigata	RLG00000009338
rosa_multiflora	Rmu_co8193946.1_g000001 Rmu_sc0002111.1_g000033 Rmu_sc0008691.1_g000007 Rmu_sc0014416.1_g000003
rosa_roxburghii	Rroxscaffold_5G00343600 Rroxscaffold_5G00359940 Rroxscaffold_5G00385380 Rroxscaffold_7G00172870
rosa_rugosa	Rorug04G0010000 Rorug04G0029400
rosa_samantha	Rh1AG130300 Rh1CG124100 Rh2AG185100 Rh2BG195400 Rh2CG190200 Rh2DG191300 Rh3AG317100 Rh3CG349400 Rh4AG088000 Rh4BG084600 Rh4CG096200 Rh4DG079500 Rh4DG154800
rosa_wichuraiana	Rw4G007290 Rw4G013320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	83
AciI	CCGC	1 cut(s)	132
AclWI	GGATC	1 cut(s)	182
AfaI	GTAC	1 cut(s)	233
AluBI	AGCT	1 cut(s)	143
AluI	AGCT	1 cut(s)	143
AlwI	GGATC	1 cut(s)	182
AoxI	GGCC	2 cut(s)	91, 114
AsuHPI	GGTGA	1 cut(s)	70
BanI	GGYRCC	1 cut(s)	83
BarI	GAAGNNNNNNTAC	2 cut(s)	224, 256
BccI	CCATC	1 cut(s)	50
BisI	GCNGC	1 cut(s)	133
BlsI	GCNGC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	85
BmsI	GCATC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	88
Bse118I	RCCGGY	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	105
BseRI	GAGGAG	1 cut(s)	62
BshFI	GGCC	2 cut(s)	93, 116
BshNI	GGYRCC	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	81
BsnI	GGCC	2 cut(s)	93, 116
Bsp143I	GATC	2 cut(s)	51, 174
BspACI	CCGC	1 cut(s)	132
BspANI	GGCC	2 cut(s)	93, 116
BspLI	GGNNCC	1 cut(s)	85
BspPI	GGATC	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	83
BsrFI	RCCGGY	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	2 cut(s)	51, 174
Bst4CI	ACNGT	1 cut(s)	25
BstF5I	GGATG	1 cut(s)	105
BstKTI	GATC	2 cut(s)	54, 177
BstMBI	GATC	2 cut(s)	51, 174
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 218
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
BsuRI	GGCC	2 cut(s)	93, 116
BtsCI	GGATG	1 cut(s)	105
Cfr10I	RCCGGY	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	2 cut(s)	112, 125
CviJI	RGCY	5 cut(s)	37, 93, 116, 143, 240
CviKI_1	RGCY	5 cut(s)	37, 93, 116, 143, 240
CviQI	GTAC	1 cut(s)	232
DpnI	GATC	2 cut(s)	53, 176
DpnII	GATC	2 cut(s)	51, 174
FaeI	CATG	2 cut(s)	115, 128
FaiI	YATR	6 cut(s)	19, 113, 120, 126, 219, 225
FatI	CATG	2 cut(s)	111, 124
Fnu4HI	GCNGC	1 cut(s)	133
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	133
GluI	GCNGC	1 cut(s)	133
HaeIII	GGCC	2 cut(s)	93, 116
HapII	CCGG	1 cut(s)	81
Hin1II	CATG	2 cut(s)	115, 128
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	2 cut(s)	14, 192
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	189
Hpy8I	GTNNAC	1 cut(s)	28
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 218
Hsp92II	CATG	2 cut(s)	115, 128
Kzo9I	GATC	2 cut(s)	51, 174
LpnPI	CCDG	1 cut(s)	94
LweI	GCATC	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	2 cut(s)	53, 176
MboI	GATC	2 cut(s)	51, 174
MboII	GAAGA	1 cut(s)	176
MflI	RGATCY	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	8
MnlI	CCTC	7 cut(s)	4, 48, 74, 80, 83, 98, 119
MslI	CAYNNNNRTG	1 cut(s)	110
MspI	CCGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	2 cut(s)	90, 218
NdeII	GATC	2 cut(s)	51, 174
NlaIII	CATG	2 cut(s)	115, 128
NlaIV	GGNNCC	1 cut(s)	85
NmeAIII	GCCGAG	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	192
PkrI	GCNGC	1 cut(s)	134
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	174
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
RseI	CAYNNNNRTG	1 cut(s)	110
SatI	GCNGC	1 cut(s)	133
Sau3AI	GATC	2 cut(s)	51, 174
SchI	GAGTC	1 cut(s)	8
SetI	ASST	1 cut(s)	145
SfaNI	GCATC	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	110
SsiI	CCGC	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	25
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	192
TseFI	GTSAC	1 cut(s)	76
Tsp45I	GTSAC	1 cut(s)	76
TspGWI	ACGGA	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.