Rroxscaffold_5G00343600

Transmembrane protein 230-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002326
Physical Location & Seq
Reverse (-)
13120318 .. 13121187
870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00343600.1

Sequence Viewer

Length: 312 bp
ATGGCGTATGTAGATCACGCATTCTCCATCACCGACGAAGACATAATGATGGAGACCTCCTACACCGTCAACAACAAGCCTCCAGTCAAAGAGATTGCTCTCGCCGTCGCCCTTCTCATCACCGGCACCCTTGGCATTGTCATCGGCTCCCTCATGGCCTATAACCGCGTCGGCGGCGACAAAGCTCACGGAATGTTCTTTGCGATTCTTGGTGGGATCTTGTTCATTCCGGGCTCCTATTACACAAGAATTGCTTACTATGCTTACAAAGGTTACAAAGGCTTCTCTTTCTCCAACATACCACCTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF872

Protein Analysis

103

Amino Acids

11.24

Weight (kDa)

6.7

Isoelectric Point (pI)

25.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM_230_134 PF05915 26 - 101 1.8e-16 Transmembrane proteins 230/134
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 125
AccII CGCG 1 cut(s) 168
AciI CCGC 2 cut(s) 166, 174
AclWI GGATC 1 cut(s) 224
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
Alw26I GTCTC 1 cut(s) 47
AlwI GGATC 1 cut(s) 224
AoxI GGCC 1 cut(s) 156
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 2 cut(s) 22, 112
BanI GGYRCC 1 cut(s) 125
BanII GRGCYC 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 45
BccI CCATC 2 cut(s) 35, 43
BceAI ACGGC 1 cut(s) 89
BcgI CGANNNNNNTGC 2 cut(s) 124, 158
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 47
BisI GCNGC 1 cut(s) 175
BlsI GCNGC 1 cut(s) 176
Bme1390I CCNGG 1 cut(s) 231
BmiI GGNNCC 3 cut(s) 127, 148, 235
BmrFI CCNGG 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 66
BpuMI CCSGG 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 130
BseNI ACTGG 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 168
BshFI GGCC 1 cut(s) 158
BshNI GGYRCC 1 cut(s) 125
BsiSI CCGG 2 cut(s) 123, 230
BsmAI GTCTC 1 cut(s) 47
BsmI GAATGC 1 cut(s) 20
BsnI GGCC 1 cut(s) 158
Bso31I GGTCTC 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 236
Bsp143I GATC 2 cut(s) 13, 216
BspACI CCGC 2 cut(s) 166, 174
BspANI GGCC 1 cut(s) 158
BspFNI CGCG 1 cut(s) 168
BspLI GGNNCC 3 cut(s) 127, 148, 235
BspPI GGATC 1 cut(s) 224
BspT107I GGYRCC 1 cut(s) 125
BspTNI GGTCTC 1 cut(s) 47
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 2 cut(s) 13, 216
BssT1I CCWWGG 1 cut(s) 130
Bst4CI ACNGT 1 cut(s) 67
BstFNI CGCG 1 cut(s) 168
BstKTI GATC 2 cut(s) 16, 219
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 2 cut(s) 13, 216
BstMWI GCNNNNNNNGC 3 cut(s) 132, 174, 260
BstSCI CCNGG 1 cut(s) 229
BstUI CGCG 1 cut(s) 168
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 216
BstYI RGATCY 1 cut(s) 216
BsuRI GGCC 1 cut(s) 158
Cfr10I RCCGGY 1 cut(s) 122
CseI GACGC 1 cut(s) 157
CviAII CATG 1 cut(s) 154
CviJI RGCY 6 cut(s) 79, 147, 158, 185, 234, 282
CviKI_1 RGCY 6 cut(s) 79, 147, 158, 185, 234, 282
DpnI GATC 2 cut(s) 15, 218
DpnII GATC 2 cut(s) 13, 216
Eco130I CCWWGG 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 236
Eco31I GGTCTC 1 cut(s) 47
EcoT14I CCWWGG 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 236
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 1 cut(s) 157
FaiI YATR 6 cut(s) 9, 44, 155, 162, 261, 299
FalI AAGNNNNNCTT 2 cut(s) 238, 270
FatI CATG 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 175
FriOI GRGCYC 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 175
GluI GCNGC 1 cut(s) 175
GsuI CTGGAG 1 cut(s) 66
HaeIII GGCC 1 cut(s) 158
HapII CCGG 2 cut(s) 123, 230
HgaI GACGC 1 cut(s) 157
Hin1II CATG 1 cut(s) 157
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HinfI GANTC 1 cut(s) 205
HpaII CCGG 2 cut(s) 123, 230
HphI GGTGA 2 cut(s) 22, 112
Hpy166II GTNNAC 1 cut(s) 70
Hpy8I GTNNAC 1 cut(s) 70
Hpy99I CGWCG 3 cut(s) 38, 110, 173
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 3 cut(s) 132, 174, 260
Hsp92II CATG 1 cut(s) 157
Kzo9I GATC 2 cut(s) 13, 216
LmnI GCTCC 2 cut(s) 152, 239
LpnPI CCDG 3 cut(s) 96, 136, 243
MaeIII GTNAC 1 cut(s) 272
MalI GATC 2 cut(s) 15, 218
MboI GATC 2 cut(s) 13, 216
MboII GAAGA 1 cut(s) 50
MflI RGATCY 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 236
MluCI AATT 1 cut(s) 249
MnlI CCTC 3 cut(s) 67, 90, 161
MslI CAYNNNNRTG 1 cut(s) 47
MspI CCGG 2 cut(s) 123, 230
MspR9I CCNGG 1 cut(s) 231
Mva1269I GAATGC 1 cut(s) 20
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 3 cut(s) 132, 174, 260
NciI CCSGG 1 cut(s) 231
NdeII GATC 2 cut(s) 13, 216
NlaIII CATG 1 cut(s) 157
NlaIV GGNNCC 3 cut(s) 127, 148, 235
PctI GAATGC 1 cut(s) 20
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 1 cut(s) 176
PspN4I GGNNCC 3 cut(s) 127, 148, 235
PsuI RGATCY 1 cut(s) 216
RseI CAYNNNNRTG 1 cut(s) 47
SatI GCNGC 1 cut(s) 175
Sau3AI GATC 2 cut(s) 13, 216
ScrFI CCNGG 1 cut(s) 231
SduI GDGCHC 1 cut(s) 236
SetI ASST 4 cut(s) 59, 187, 274, 307
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 1 cut(s) 249
SsiI CCGC 2 cut(s) 166, 174
StyD4I CCNGG 1 cut(s) 229
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 67
TasI AATT 1 cut(s) 249
TauI GCSGC 1 cut(s) 177
TfiI GAWTC 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 214
TspGWI ACGGA 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.