Rw4G013320

Transmembrane protein 230-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
31141908 .. 31145096
3189 bp
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UTR
Exon/CDS
Intron
Rw4G013320.1

Sequence Viewer

Length: 237 bp
ATGGCTTATGTAGATCATCCATTCTCCATTACCGACGTAGACATAATGATGGAGACCTCCTACATTATTGATCCTCCAATCAAAGAGATCGCTCTCGACATCGCCCTTCTCGTCACTGGAACCCTCAGCATTGTCGTCGGCACCCTCATGGCCTATAACCACATCGGCGGCGACAAAGCTCACGATACCCTAATGAAGTTATTTTATTATTATGATGATTTTTATTATTATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

78

Amino Acids

8.98

Weight (kDa)

4.22

Isoelectric Point (pI)

27.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 140
AccI GTMKAC 1 cut(s) 39
AciI CCGC 1 cut(s) 168
AclWI GGATC 1 cut(s) 65
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 47
AlwI GGATC 1 cut(s) 65
AoxI GGCC 1 cut(s) 150
BanI GGYRCC 1 cut(s) 140
BbvCI CCTCAGC 1 cut(s) 125
BccI CCATC 1 cut(s) 43
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BcoDI GTCTC 1 cut(s) 47
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
BmiI GGNNCC 2 cut(s) 121, 142
Bpu10I CCTNAGC 1 cut(s) 125
BsaI GGTCTC 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 121
BseGI GGATG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 139
BseNI ACTGG 1 cut(s) 121
BshFI GGCC 1 cut(s) 152
BshNI GGYRCC 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 47
BsnI GGCC 1 cut(s) 152
Bso31I GGTCTC 1 cut(s) 47
Bsp143I GATC 3 cut(s) 13, 70, 87
BspACI CCGC 1 cut(s) 168
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 138
BspLI GGNNCC 2 cut(s) 121, 142
BspPI GGATC 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 140
BspTNI GGTCTC 1 cut(s) 47
BsrI ACTGG 1 cut(s) 121
BssMI GATC 3 cut(s) 13, 70, 87
BstDEI CTNAG 1 cut(s) 125
BstF5I GGATG 1 cut(s) 16
BstKTI GATC 3 cut(s) 16, 73, 90
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 3 cut(s) 13, 70, 87
BsuRI GGCC 1 cut(s) 152
BtgZI GCGATG 1 cut(s) 85
BtsCI GGATG 1 cut(s) 16
BtsIMutI CAGTG 1 cut(s) 114
CviAII CATG 1 cut(s) 148
CviJI RGCY 3 cut(s) 5, 152, 179
CviKI_1 RGCY 3 cut(s) 5, 152, 179
DdeI CTNAG 1 cut(s) 125
DpnI GATC 3 cut(s) 15, 72, 89
DpnII GATC 3 cut(s) 13, 70, 87
Eco31I GGTCTC 1 cut(s) 47
FaeI CATG 1 cut(s) 151
FaiI YATR 5 cut(s) 9, 44, 149, 156, 213
FatI CATG 1 cut(s) 147
FblI GTMKAC 1 cut(s) 39
Fnu4HI GCNGC 1 cut(s) 169
FokI GGATG 1 cut(s) 3
Fsp4HI GCNGC 1 cut(s) 169
GluI GCNGC 1 cut(s) 169
HaeIII GGCC 1 cut(s) 152
Hin1II CATG 1 cut(s) 151
Hpy166II GTNNAC 1 cut(s) 40
Hpy188III TCNNGA 2 cut(s) 95, 182
Hpy8I GTNNAC 1 cut(s) 40
Hpy99I CGWCG 2 cut(s) 38, 140
HpyAV CCTTC 1 cut(s) 116
HpyCH4IV ACGT 1 cut(s) 36
HpyF3I CTNAG 1 cut(s) 125
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 1 cut(s) 151
Kzo9I GATC 3 cut(s) 13, 70, 87
LpnPI CCDG 1 cut(s) 102
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 112
MalI GATC 3 cut(s) 15, 72, 89
MboI GATC 3 cut(s) 13, 70, 87
MnlI CCTC 4 cut(s) 67, 84, 134, 155
MslI CAYNNNNRTG 2 cut(s) 47, 146
NdeII GATC 3 cut(s) 13, 70, 87
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 2 cut(s) 121, 142
NmuCI GTSAC 1 cut(s) 112
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PkrI GCNGC 1 cut(s) 170
PspN4I GGNNCC 2 cut(s) 121, 142
RseI CAYNNNNRTG 2 cut(s) 47, 146
SatI GCNGC 1 cut(s) 169
Sau3AI GATC 3 cut(s) 13, 70, 87
SetI ASST 3 cut(s) 39, 59, 181
SgeI CNNG 5 cut(s) 107, 122, 129, 160, 194
SmiMI CAYNNNNRTG 2 cut(s) 47, 146
SsiI CCGC 1 cut(s) 168
TaiI ACGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 96
TauI GCSGC 1 cut(s) 171
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 1 cut(s) 209
TspRI CASTG 1 cut(s) 121
XmiI GTMKAC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.