Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002326

Physical Location & Seq

Genomic Coordinates Forward (+)

64450913 .. 64459282

Gene Structure 8370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00385380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCATCCAAGTGTTTGGTGCAAGTAAGCAAACATGTGCTGCGTGTTGTTTGGTGGCTGATTATATTACCCAAGGGGGATAGAATTACAACGGAAATATCAATTACATTGATGATACTAAATGCTTTGATTGAATGTGATTTCCATGGCGTATGTGGATCACCCATTCTCGATTACGACATAATGATGGAGATCTCCTGCACCGTCAACAACAAGCCTCCAATCAAAGAGATCACTCTCGACATTGCCCTTCTCGTCACCGACACCCTCAGCATTGTTGTCGGCACCCTCATGGCCTATAATCGCATTGGCGGCGAAAAAGCTCTTGGTACCCTAATGCCACCCTTCTACTGCCACAATGGTGACGCAACGAAGGAATACTTGCATAAACAAATTGAGATATTGATGATAAAGTCTCACTGGAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF872

Protein Analysis

143

Amino Acids

16.1

Weight (kDa)

6.94

Isoelectric Point (pI)

57.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19350 AT4G29850
fragaria_vesca	FvH4_4g06710 FvH4_4g06710 FvH4_4g06710 FvH4_4g06710 FvH4_4g06710 FvH4_4g06710
malus_domestica	MD13G1237400.v1.1 MD16G1242800.v1.1
prunus_persica	Prupe.1G069900_v2.0.a1
pyrus_communis	pycom16g20370
rosa_chinensis	RchiOBHm_Chr2g0106271 RchiOBHm_Chr3g0494811 RchiOBHm_Chr4g0391941 RchiOBHm_Chr4g0398651
rosa_laevigata	RLG00000009338
rosa_multiflora	Rmu_co8193946.1_g000001 Rmu_sc0002111.1_g000033 Rmu_sc0008691.1_g000007 Rmu_sc0014416.1_g000003
rosa_roxburghii	Rroxscaffold_5G00343600 Rroxscaffold_5G00359940 Rroxscaffold_5G00385380 Rroxscaffold_7G00172870
rosa_rugosa	Rorug04G0010000 Rorug04G0029400
rosa_samantha	Rh1AG130300 Rh1CG124100 Rh2AG185100 Rh2BG195400 Rh2CG190200 Rh2DG191300 Rh3AG317100 Rh3CG349400 Rh4AG088000 Rh4BG084600 Rh4CG096200 Rh4DG079500 Rh4DG154800
rosa_wichuraiana	Rw4G007290 Rw4G013320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	329
AccB1I	GGYRCC	2 cut(s)	284, 329
AciI	CCGC	1 cut(s)	312
AclWI	GGATC	1 cut(s)	166
AfaI	GTAC	1 cut(s)	331
AflIII	ACRYGT	1 cut(s)	34
AgsI	TTSAA	1 cut(s)	134
AjuI	GAANNNNNNNTTGG	2 cut(s)	309, 341
AleI	CACNNNNGTG	1 cut(s)	360
AluBI	AGCT	1 cut(s)	323
AluI	AGCT	1 cut(s)	323
Alw26I	GTCTC	1 cut(s)	420
AlwI	GGATC	1 cut(s)	166
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	1 cut(s)	40
Asp718I	GGTACC	1 cut(s)	329
AsuHPI	GGTGA	3 cut(s)	153, 250, 374
BanI	GGYRCC	2 cut(s)	284, 329
BbvCI	CCTCAGC	1 cut(s)	269
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	1 cut(s)	181
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BcoDI	GTCTC	1 cut(s)	420
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	2 cut(s)	41, 313
BlsI	GCNGC	2 cut(s)	42, 314
BmiI	GGNNCC	2 cut(s)	286, 331
BmsI	GCATC	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	269
BsaBI	GATNNNNATC	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	72, 145
Bse1I	ACTGG	1 cut(s)	425
Bse3DI	GCAATG	1 cut(s)	243
Bse8I	GATNNNNATC	1 cut(s)	191
BseDI	CCNNGG	2 cut(s)	72, 145
BseGI	GGATG	1 cut(s)	5
BseJI	GATNNNNATC	1 cut(s)	191
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	283
BseNI	ACTGG	1 cut(s)	425
BseXI	GCAGC	1 cut(s)	27
BsgI	GTGCAG	1 cut(s)	184
BshFI	GGCC	1 cut(s)	296
BshNI	GGYRCC	2 cut(s)	284, 329
BsmAI	GTCTC	1 cut(s)	420
BsnI	GGCC	1 cut(s)	296
Bsp143I	GATC	3 cut(s)	158, 192, 231
Bsp19I	CCATGG	1 cut(s)	145
BspACI	CCGC	1 cut(s)	312
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	1 cut(s)	282
BspLI	GGNNCC	2 cut(s)	286, 331
BspPI	GGATC	1 cut(s)	166
BspT107I	GGYRCC	2 cut(s)	284, 329
BsrDI	GCAATG	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	2 cut(s)	72, 145
BssMI	GATC	3 cut(s)	158, 192, 231
BssT1I	CCWWGG	2 cut(s)	72, 145
Bst4CI	ACNGT	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	269
BstDSI	CCRYGG	1 cut(s)	145
BstF5I	GGATG	1 cut(s)	5
BstKTI	GATC	3 cut(s)	161, 195, 234
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	3 cut(s)	158, 192, 231
BstMWI	GCNNNNNNNGC	1 cut(s)	312
BstNSI	RCATGY	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	192
BstXI	CCANNNNNNTGG	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	296
BtgI	CCRYGG	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	418
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	1 cut(s)	330
CviAII	CATG	3 cut(s)	35, 146, 292
CviJI	RGCY	4 cut(s)	58, 217, 296, 323
CviKI_1	RGCY	4 cut(s)	58, 217, 296, 323
CviQI	GTAC	1 cut(s)	330
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	3 cut(s)	160, 194, 233
DpnII	GATC	3 cut(s)	158, 192, 231
Eco130I	CCWWGG	2 cut(s)	72, 145
EcoT14I	CCWWGG	2 cut(s)	72, 145
ErhI	CCWWGG	2 cut(s)	72, 145
FaeI	CATG	3 cut(s)	38, 149, 295
FaiI	YATR	8 cut(s)	36, 65, 147, 154, 182, 293, 300, 387
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FatI	CATG	3 cut(s)	34, 145, 291
Fnu4HI	GCNGC	2 cut(s)	41, 313
Fsp4HI	GCNGC	2 cut(s)	41, 313
GluI	GCNGC	2 cut(s)	41, 313
HaeIII	GGCC	1 cut(s)	296
HgaI	GACGC	1 cut(s)	374
Hin1II	CATG	3 cut(s)	38, 149, 295
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HphI	GGTGA	3 cut(s)	153, 250, 374
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188III	TCNNGA	2 cut(s)	170, 239
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	3 cut(s)	260, 355, 367
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	3 cut(s)	22, 201, 385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	312
HpyF3I	CTNAG	1 cut(s)	269
Hsp92II	CATG	3 cut(s)	38, 149, 295
KpnI	GGTACC	1 cut(s)	333
Kzo9I	GATC	3 cut(s)	158, 192, 231
LpnPI	CCDG	2 cut(s)	211, 406
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	1 cut(s)	14
MaeIII	GTNAC	2 cut(s)	256, 362
MalI	GATC	3 cut(s)	160, 194, 233
MboI	GATC	3 cut(s)	158, 192, 231
MflI	RGATCY	1 cut(s)	192
MluCI	AATT	3 cut(s)	84, 102, 393
MnlI	CCTC	3 cut(s)	228, 278, 299
MslI	CAYNNNNRTG	4 cut(s)	10, 185, 290, 360
MwoI	GCNNNNNNNGC	1 cut(s)	312
NcoI	CCATGG	1 cut(s)	145
NdeII	GATC	3 cut(s)	158, 192, 231
NlaIII	CATG	3 cut(s)	38, 149, 295
NlaIV	GGNNCC	2 cut(s)	286, 331
NmuCI	GTSAC	2 cut(s)	256, 362
NspI	RCATGY	1 cut(s)	38
OliI	CACNNNNGTG	1 cut(s)	360
PciI	ACATGT	1 cut(s)	34
PkrI	GCNGC	2 cut(s)	42, 314
PscI	ACATGT	1 cut(s)	34
PspN4I	GGNNCC	2 cut(s)	286, 331
PsuI	RGATCY	1 cut(s)	192
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
RseI	CAYNNNNRTG	4 cut(s)	10, 185, 290, 360
SatI	GCNGC	2 cut(s)	41, 313
Sau3AI	GATC	3 cut(s)	158, 192, 231
SetI	ASST	1 cut(s)	325
SfaNI	GCATC	1 cut(s)	14
SmiMI	CAYNNNNRTG	4 cut(s)	10, 185, 290, 360
Sse9I	AATT	3 cut(s)	84, 102, 393
SsiI	CCGC	1 cut(s)	312
StyI	CCWWGG	2 cut(s)	72, 145
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	2 cut(s)	171, 240
TasI	AATT	3 cut(s)	84, 102, 393
TauI	GCSGC	1 cut(s)	315
TscAI	CASTG	1 cut(s)	425
TseFI	GTSAC	2 cut(s)	256, 362
TseI	GCWGC	1 cut(s)	40
Tsp45I	GTSAC	2 cut(s)	256, 362
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	1 cut(s)	425
XceI	RCATGY	1 cut(s)	38
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.