Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002326

Physical Location & Seq

Genomic Coordinates Reverse (-)

13001556 .. 13002229

Gene Structure 674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00172870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGAGACCTCCTACACCGTCAACAACAAGCCTCCAATCAAAGAGATTGCTCTTGACATCGCCCTTCTCGTCACCGGAACCCTCGGCATTGATGTCGGCACCCTCATGGCCTATAATCACATCAGCGAAAAAGCTCACGAATGTTCTTTGCAATTCTTGGTGGGATCTTGTTCATTCCAGGCTCTATTACACGCGGATTGCTTAGCTATGCTTACAAAGGATACAAGGGCCTCCAATATATCGCCTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF872

Protein Analysis

83

Amino Acids

8.95

Weight (kDa)

5.37

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19350 AT4G29850
fragaria_vesca	FvH4_4g06710 FvH4_4g06710 FvH4_4g06710 FvH4_4g06710 FvH4_4g06710 FvH4_4g06710
malus_domestica	MD13G1237400.v1.1 MD16G1242800.v1.1
prunus_persica	Prupe.1G069900_v2.0.a1
pyrus_communis	pycom16g20370
rosa_chinensis	RchiOBHm_Chr2g0106271 RchiOBHm_Chr3g0494811 RchiOBHm_Chr4g0391941 RchiOBHm_Chr4g0398651
rosa_laevigata	RLG00000009338
rosa_multiflora	Rmu_co8193946.1_g000001 Rmu_sc0002111.1_g000033 Rmu_sc0008691.1_g000007 Rmu_sc0014416.1_g000003
rosa_roxburghii	Rroxscaffold_5G00343600 Rroxscaffold_5G00359940 Rroxscaffold_5G00385380 Rroxscaffold_7G00172870
rosa_rugosa	Rorug04G0010000 Rorug04G0029400
rosa_samantha	Rh1AG130300 Rh1CG124100 Rh2AG185100 Rh2BG195400 Rh2CG190200 Rh2DG191300 Rh3AG317100 Rh3CG349400 Rh4AG088000 Rh4BG084600 Rh4CG096200 Rh4DG079500 Rh4DG154800
rosa_wichuraiana	Rw4G007290 Rw4G013320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	98
AccII	CGCG	1 cut(s)	194
AciI	CCGC	1 cut(s)	194
AclWI	GGATC	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	2 cut(s)	134, 206
AluI	AGCT	2 cut(s)	134, 206
AlwI	GGATC	1 cut(s)	172
AoxI	GGCC	2 cut(s)	108, 228
AspS9I	GGNCC	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	64
BanI	GGYRCC	1 cut(s)	98
BcgI	CGANNNNNNTGC	2 cut(s)	76, 110
BciT130I	CCWGG	1 cut(s)	179
BciVI	GTATCC	1 cut(s)	214
BfuI	GTATCC	1 cut(s)	214
BlpI	GCTNAGC	1 cut(s)	202
Bme1390I	CCNGG	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	228
BmiI	GGNNCC	2 cut(s)	79, 100
BmrFI	CCNGG	1 cut(s)	179
Bpu1102I	GCTNAGC	1 cut(s)	202
BsaJI	CCNNGG	1 cut(s)	82
BsaWI	WCCGGW	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	82
Bsh1236I	CGCG	1 cut(s)	194
BshFI	GGCC	2 cut(s)	110, 230
BshNI	GGYRCC	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	75
BsnI	GGCC	2 cut(s)	110, 230
Bsp143I	GATC	1 cut(s)	164
Bsp1720I	GCTNAGC	1 cut(s)	202
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	2 cut(s)	110, 230
BspFNI	CGCG	1 cut(s)	194
BspLI	GGNNCC	2 cut(s)	79, 100
BspPI	GGATC	1 cut(s)	172
BspT107I	GGYRCC	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	1 cut(s)	164
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	19
BstDEI	CTNAG	1 cut(s)	202
BstFNI	CGCG	1 cut(s)	194
BstKTI	GATC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	164
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	177
BstUI	CGCG	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	164
BsuI	GTATCC	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	110, 230
BtgZI	GCGATG	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	228
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	6 cut(s)	31, 110, 134, 182, 206, 230
CviKI_1	RGCY	6 cut(s)	31, 110, 134, 182, 206, 230
DdeI	CTNAG	1 cut(s)	202
DpnI	GATC	1 cut(s)	166
DpnII	GATC	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	177
FaeI	CATG	1 cut(s)	109
FaiI	YATR	4 cut(s)	107, 114, 209, 239
FatI	CATG	1 cut(s)	105
HaeIII	GGCC	2 cut(s)	110, 230
HapII	CCGG	1 cut(s)	75
Hin1II	CATG	1 cut(s)	109
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188III	TCNNGA	2 cut(s)	53, 137
Hpy8I	GTNNAC	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	1 cut(s)	151
HpyF3I	CTNAG	1 cut(s)	202
Hsp92II	CATG	1 cut(s)	109
Kzo9I	GATC	1 cut(s)	164
LpnPI	CCDG	3 cut(s)	88, 164, 191
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	1 cut(s)	166
MboI	GATC	1 cut(s)	164
MflI	RGATCY	1 cut(s)	164
MluCI	AATT	1 cut(s)	152
MnlI	CCTC	5 cut(s)	19, 42, 92, 113, 241
MslI	CAYNNNNRTG	1 cut(s)	104
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	179
MvnI	CGCG	1 cut(s)	194
NdeII	GATC	1 cut(s)	164
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	2 cut(s)	79, 100
NmeAIII	GCCGAG	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	2 cut(s)	79, 100
PspPI	GGNCC	1 cut(s)	228
PsuI	RGATCY	1 cut(s)	164
RseI	CAYNNNNRTG	1 cut(s)	104
Sau3AI	GATC	1 cut(s)	164
Sau96I	GGNCC	1 cut(s)	228
ScrFI	CCNGG	1 cut(s)	179
SetI	ASST	3 cut(s)	11, 136, 208
SmiMI	CAYNNNNRTG	1 cut(s)	104
Sse9I	AATT	1 cut(s)	152
SsiI	CCGC	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	19
TasI	AATT	1 cut(s)	152
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.