Rh1AG130300

Transmembrane protein 230-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002326
Physical Location & Seq
Forward (+)
24560060 .. 24560357
298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG130300.1

Sequence Viewer

Length: 219 bp
ATGATGGAGACCTCCTACACCGTCAACAACAAGCCTCCAATCAAAGAGATCGCTCTCGCCATTGCCCTTCTCGTCCTTGGCATTGTCGTTGGCTCCCTCATGGCCTATAACCGCGTCGGCGGCAACAAAGCTCACAGAATGTTCTTTGCGATTCTTGGTGGGATATTGTTCATTCAAGGCTCCTATTACGTGCGGATTACTTACTATGCTTACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF872

Protein Analysis

72

Amino Acids

8.04

Weight (kDa)

9.75

Isoelectric Point (pI)

26.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM_230_134 PF05915 13 - 72 2.7e-06 Transmembrane proteins 230/134
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 114
AciI CCGC 3 cut(s) 112, 120, 193
AgsI TTSAA 1 cut(s) 176
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
Alw26I GTCTC 1 cut(s) 2
AoxI GGCC 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 2
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
BmiI GGNNCC 2 cut(s) 94, 181
BsaAI YACGTR 1 cut(s) 190
BsaI GGTCTC 1 cut(s) 2
BsaJI CCNNGG 1 cut(s) 76
Bse3DI GCAATG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 76
BseMI GCAATG 1 cut(s) 60
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 1 cut(s) 104
BsmAI GTCTC 1 cut(s) 2
BsnI GGCC 1 cut(s) 104
Bso31I GGTCTC 1 cut(s) 2
Bsp143I GATC 1 cut(s) 48
BspACI CCGC 3 cut(s) 112, 120, 193
BspANI GGCC 1 cut(s) 104
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 2 cut(s) 94, 181
BspTNI GGTCTC 1 cut(s) 2
BsrDI GCAATG 1 cut(s) 60
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 22
BstBAI YACGTR 1 cut(s) 190
BstFNI CGCG 1 cut(s) 114
BstKTI GATC 1 cut(s) 51
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 1 cut(s) 48
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstUI CGCG 1 cut(s) 114
BsuRI GGCC 1 cut(s) 104
CseI GACGC 1 cut(s) 103
CviAII CATG 1 cut(s) 100
CviJI RGCY 5 cut(s) 34, 93, 104, 131, 180
CviKI_1 RGCY 5 cut(s) 34, 93, 104, 131, 180
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 76
Eco31I GGTCTC 1 cut(s) 2
EcoT14I CCWWGG 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 1 cut(s) 103
FaiI YATR 3 cut(s) 101, 108, 207
FatI CATG 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 121
GluI GCNGC 1 cut(s) 121
HaeIII GGCC 1 cut(s) 104
HgaI GACGC 1 cut(s) 103
Hin1II CATG 1 cut(s) 103
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 1 cut(s) 151
Hpy166II GTNNAC 1 cut(s) 25
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 189
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 1 cut(s) 103
Kzo9I GATC 1 cut(s) 48
LmnI GCTCC 2 cut(s) 98, 185
MaeII ACGT 1 cut(s) 189
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MnlI CCTC 3 cut(s) 22, 45, 107
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 120
NdeII GATC 1 cut(s) 48
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 2 cut(s) 94, 181
PfeI GAWTC 1 cut(s) 151
PkrI GCNGC 1 cut(s) 122
Ppu21I YACGTR 1 cut(s) 190
PspN4I GGNNCC 2 cut(s) 94, 181
SatI GCNGC 1 cut(s) 121
Sau3AI GATC 1 cut(s) 48
SetI ASST 3 cut(s) 14, 133, 192
SgeI CNNG 9 cut(s) 43, 68, 83, 89, 112, 125, 167, 188, 202
SsiI CCGC 3 cut(s) 112, 120, 193
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 1 cut(s) 192
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 1 cut(s) 151
TspDTI ATGAA 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.