Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002326

Physical Location & Seq

Genomic Coordinates Reverse (-)

41800195 .. 41800419

Gene Structure 225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG349400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGTGTATGTAGATCACCCATTCTTGATTGCCGATGTAGACATAATGATGGAGACCTCCTACACTGTCAACAACAAGCCTCCAACCAAAGAGATCGCTCTCGACATTGCCTTTCTCGTCACCAGAACCCTCAACATTGTCGTCCGCACCCTCATGGCCTATAACCGTGTCGGCGGCAACAAAGCTCACAGTACCCTAATGCCACCCTTCTACTGCCCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF872

Protein Analysis

74

Amino Acids

8.4

Weight (kDa)

6.81

Isoelectric Point (pI)

36.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19350 AT4G29850
fragaria_vesca	FvH4_4g06710 FvH4_4g06710 FvH4_4g06710 FvH4_4g06710 FvH4_4g06710 FvH4_4g06710
malus_domestica	MD13G1237400.v1.1 MD16G1242800.v1.1
prunus_persica	Prupe.1G069900_v2.0.a1
pyrus_communis	pycom16g20370
rosa_chinensis	RchiOBHm_Chr2g0106271 RchiOBHm_Chr3g0494811 RchiOBHm_Chr4g0391941 RchiOBHm_Chr4g0398651
rosa_laevigata	RLG00000009338
rosa_multiflora	Rmu_co8193946.1_g000001 Rmu_sc0002111.1_g000033 Rmu_sc0008691.1_g000007 Rmu_sc0014416.1_g000003
rosa_roxburghii	Rroxscaffold_5G00343600 Rroxscaffold_5G00359940 Rroxscaffold_5G00385380 Rroxscaffold_7G00172870
rosa_rugosa	Rorug04G0010000 Rorug04G0029400
rosa_samantha	Rh1AG130300 Rh1CG124100 Rh2AG185100 Rh2BG195400 Rh2CG190200 Rh2DG191300 Rh3AG317100 Rh3CG349400 Rh4AG088000 Rh4BG084600 Rh4CG096200 Rh4DG079500 Rh4DG154800
rosa_wichuraiana	Rw4G007290 Rw4G013320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	39
AciI	CCGC	2 cut(s)	145, 174
AfaI	GTAC	1 cut(s)	193
AluBI	AGCT	1 cut(s)	185
AluI	AGCT	1 cut(s)	185
Alw26I	GTCTC	1 cut(s)	47
AoxI	GGCC	1 cut(s)	156
AsuHPI	GGTGA	2 cut(s)	8, 112
BccI	CCATC	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	47
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
BsaI	GGTCTC	1 cut(s)	47
Bse3DI	GCAATG	1 cut(s)	105
BseMI	GCAATG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	47
BsnI	GGCC	1 cut(s)	158
Bso31I	GGTCTC	1 cut(s)	47
Bsp143I	GATC	2 cut(s)	13, 93
BspACI	CCGC	2 cut(s)	145, 174
BspANI	GGCC	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	105
BssMI	GATC	2 cut(s)	13, 93
Bst4CI	ACNGT	3 cut(s)	67, 167, 191
BstKTI	GATC	2 cut(s)	16, 96
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	2 cut(s)	13, 93
BsuRI	GGCC	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	192
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	3 cut(s)	79, 158, 185
CviKI_1	RGCY	3 cut(s)	79, 158, 185
CviQI	GTAC	1 cut(s)	192
DpnI	GATC	2 cut(s)	15, 95
DpnII	GATC	2 cut(s)	13, 93
Eco31I	GGTCTC	1 cut(s)	47
FaeI	CATG	1 cut(s)	157
FaiI	YATR	4 cut(s)	9, 44, 155, 162
FatI	CATG	1 cut(s)	153
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	175
GluI	GCNGC	1 cut(s)	175
HaeIII	GGCC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	157
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HphI	GGTGA	2 cut(s)	8, 112
Hpy166II	GTNNAC	2 cut(s)	40, 70
Hpy188III	TCNNGA	2 cut(s)	25, 101
Hpy8I	GTNNAC	2 cut(s)	40, 70
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	3 cut(s)	67, 167, 191
Hsp92II	CATG	1 cut(s)	157
Kzo9I	GATC	2 cut(s)	13, 93
LpnPI	CCDG	1 cut(s)	136
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	2 cut(s)	15, 95
MboI	GATC	2 cut(s)	13, 93
MmeI	TCCRAC	1 cut(s)	107
MnlI	CCTC	4 cut(s)	67, 90, 140, 161
MslI	CAYNNNNRTG	2 cut(s)	47, 152
NdeII	GATC	2 cut(s)	13, 93
NlaIII	CATG	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	118
PkrI	GCNGC	1 cut(s)	176
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
RseI	CAYNNNNRTG	2 cut(s)	47, 152
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	2 cut(s)	13, 93
SetI	ASST	2 cut(s)	59, 187
SgeI	CNNG	7 cut(s)	37, 88, 113, 128, 135, 166, 179
SmiMI	CAYNNNNRTG	2 cut(s)	47, 152
SsiI	CCGC	2 cut(s)	145, 174
TaaI	ACNGT	3 cut(s)	67, 167, 191
TaqI	TCGA	1 cut(s)	102
TauI	GCSGC	1 cut(s)	177
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	1 cut(s)	118
Tsp45I	GTSAC	1 cut(s)	118
TspRI	CASTG	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.