Rmu_co8193946.1_g000001

Transmembrane protein 230-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8193946.1
OG0002326
Physical Location & Seq
Forward (+)
17 .. 416
400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8193946.1_g000001.1.cds

Sequence Viewer

Length: 312 bp
atggcgtatgtagatcacgcattctccatcaccgacgaagacataatgatggagacctcctacaccgtcaacaacaagcctccaatcaaagagatcgctctcgccgtcgcccttctcatcaccggcaccctcggcattgtcatcggctccctcatggcctataaccacgtcggcggcgacaaagctcacggaatgttctttgcgattcttggtgggatcttgttcattccgggctcctattacacaagaattgcttactatgcttacaaaggttacaaaggcttctctttctccaacataccacctgtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF872

Protein Analysis

103

Amino Acids

11.24

Weight (kDa)

6.23

Isoelectric Point (pI)

23.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 125
AciI CCGC 1 cut(s) 174
AclWI GGATC 1 cut(s) 224
AjiI CACGTC 1 cut(s) 169
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
Alw26I GTCTC 1 cut(s) 47
AlwI GGATC 1 cut(s) 224
AoxI GGCC 1 cut(s) 156
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 2 cut(s) 22, 112
BanI GGYRCC 1 cut(s) 125
BanII GRGCYC 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 45
BccI CCATC 2 cut(s) 35, 43
BceAI ACGGC 1 cut(s) 89
BcgI CGANNNNNNTGC 2 cut(s) 124, 158
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 47
BisI GCNGC 1 cut(s) 175
BlsI GCNGC 1 cut(s) 176
Bme1390I CCNGG 1 cut(s) 231
BmgBI CACGTC 1 cut(s) 169
BmiI GGNNCC 3 cut(s) 127, 148, 235
BmrFI CCNGG 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 45
BpuMI CCSGG 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bse118I RCCGGY 1 cut(s) 122
BseDI CCNNGG 1 cut(s) 130
BshFI GGCC 1 cut(s) 158
BshNI GGYRCC 1 cut(s) 125
BsiSI CCGG 2 cut(s) 123, 230
BsmAI GTCTC 1 cut(s) 47
BsmI GAATGC 1 cut(s) 20
BsnI GGCC 1 cut(s) 158
Bso31I GGTCTC 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 236
Bsp143I GATC 3 cut(s) 13, 93, 216
BspACI CCGC 1 cut(s) 174
BspANI GGCC 1 cut(s) 158
BspLI GGNNCC 3 cut(s) 127, 148, 235
BspPI GGATC 1 cut(s) 224
BspT107I GGYRCC 1 cut(s) 125
BspTNI GGTCTC 1 cut(s) 47
BsrFI RCCGGY 1 cut(s) 122
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 3 cut(s) 13, 93, 216
Bst4CI ACNGT 1 cut(s) 67
BstKTI GATC 3 cut(s) 16, 96, 219
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 3 cut(s) 13, 93, 216
BstMWI GCNNNNNNNGC 2 cut(s) 132, 260
BstSCI CCNGG 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 216
BstYI RGATCY 1 cut(s) 216
BsuRI GGCC 1 cut(s) 158
BtrI CACGTC 1 cut(s) 169
Cfr10I RCCGGY 1 cut(s) 122
CviAII CATG 1 cut(s) 154
CviJI RGCY 6 cut(s) 79, 147, 158, 185, 234, 282
CviKI_1 RGCY 6 cut(s) 79, 147, 158, 185, 234, 282
DpnI GATC 3 cut(s) 15, 95, 218
DpnII GATC 3 cut(s) 13, 93, 216
Eco24I GRGCYC 1 cut(s) 236
Eco31I GGTCTC 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 236
FaeI CATG 1 cut(s) 157
FaiI YATR 6 cut(s) 9, 44, 155, 162, 261, 299
FalI AAGNNNNNCTT 2 cut(s) 238, 270
FatI CATG 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 175
FriOI GRGCYC 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 175
GluI GCNGC 1 cut(s) 175
HaeIII GGCC 1 cut(s) 158
HapII CCGG 2 cut(s) 123, 230
Hin1II CATG 1 cut(s) 157
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HinfI GANTC 1 cut(s) 205
HpaII CCGG 2 cut(s) 123, 230
HphI GGTGA 2 cut(s) 22, 112
Hpy166II GTNNAC 1 cut(s) 70
Hpy8I GTNNAC 1 cut(s) 70
Hpy99I CGWCG 3 cut(s) 38, 110, 173
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 1 cut(s) 168
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 260
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 1 cut(s) 157
Kzo9I GATC 3 cut(s) 13, 93, 216
LmnI GCTCC 2 cut(s) 152, 239
LpnPI CCDG 2 cut(s) 136, 243
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 272
MalI GATC 3 cut(s) 15, 95, 218
MboI GATC 3 cut(s) 13, 93, 216
MboII GAAGA 1 cut(s) 50
MflI RGATCY 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 236
MluCI AATT 1 cut(s) 249
MnlI CCTC 4 cut(s) 67, 90, 140, 161
MslI CAYNNNNRTG 1 cut(s) 47
MspI CCGG 2 cut(s) 123, 230
MspR9I CCNGG 1 cut(s) 231
Mva1269I GAATGC 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 132, 260
NciI CCSGG 1 cut(s) 231
NdeII GATC 3 cut(s) 13, 93, 216
NlaIII CATG 1 cut(s) 157
NlaIV GGNNCC 3 cut(s) 127, 148, 235
NmeAIII GCCGAG 1 cut(s) 111
PcsI WCGNNNNNNNCGW 2 cut(s) 102, 174
PctI GAATGC 1 cut(s) 20
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 1 cut(s) 176
PspN4I GGNNCC 3 cut(s) 127, 148, 235
PsuI RGATCY 1 cut(s) 216
RseI CAYNNNNRTG 1 cut(s) 47
SatI GCNGC 1 cut(s) 175
Sau3AI GATC 3 cut(s) 13, 93, 216
ScrFI CCNGG 1 cut(s) 231
SduI GDGCHC 1 cut(s) 236
SetI ASST 5 cut(s) 59, 171, 187, 274, 307
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 1 cut(s) 249
SsiI CCGC 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 229
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 1 cut(s) 171
TasI AATT 1 cut(s) 249
TauI GCSGC 1 cut(s) 177
TfiI GAWTC 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 214
TspGWI ACGGA 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.