Rh1CG124100

Transmembrane protein 230-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002326
Physical Location & Seq
Forward (+)
27062700 .. 27062994
295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG124100.1

Sequence Viewer

Length: 216 bp
ATGGAGACCTCCTACACCGTCAACAACAAGCCTCCAATCAAAGAGATCGCTCTCGCCATTGCCCTTCTCGTCCTTGGCATTGTCGTTGGCTCCCTCATGGCCTATAACCGCGTCGGCGGCAACAAAGCTCACAGAATGTTCTTTGCGATTCTTGGTGGGATATTGTTCATTCAAGGCTCCTATTACGTGCGGATTACTTACTATGCTTACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF872

Protein Analysis

71

Amino Acids

7.9

Weight (kDa)

9.75

Isoelectric Point (pI)

27.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM_230_134 PF05915 12 - 71 2.6e-06 Transmembrane proteins 230/134
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 111
AciI CCGC 3 cut(s) 109, 117, 190
AgsI TTSAA 1 cut(s) 173
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
AoxI GGCC 1 cut(s) 99
BisI GCNGC 1 cut(s) 118
BlsI GCNGC 1 cut(s) 119
BmiI GGNNCC 2 cut(s) 91, 178
BsaAI YACGTR 1 cut(s) 187
BsaJI CCNNGG 1 cut(s) 73
Bse3DI GCAATG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 73
BseMI GCAATG 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 1 cut(s) 101
BsnI GGCC 1 cut(s) 101
Bsp143I GATC 1 cut(s) 45
BspACI CCGC 3 cut(s) 109, 117, 190
BspANI GGCC 1 cut(s) 101
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 2 cut(s) 91, 178
BsrDI GCAATG 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 73
Bst4CI ACNGT 1 cut(s) 19
BstBAI YACGTR 1 cut(s) 187
BstFNI CGCG 1 cut(s) 111
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstUI CGCG 1 cut(s) 111
BsuRI GGCC 1 cut(s) 101
CseI GACGC 1 cut(s) 100
CviAII CATG 1 cut(s) 97
CviJI RGCY 5 cut(s) 31, 90, 101, 128, 177
CviKI_1 RGCY 5 cut(s) 31, 90, 101, 128, 177
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 1 cut(s) 100
FaiI YATR 3 cut(s) 98, 105, 204
FatI CATG 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 118
Fsp4HI GCNGC 1 cut(s) 118
GluI GCNGC 1 cut(s) 118
HaeIII GGCC 1 cut(s) 101
HgaI GACGC 1 cut(s) 100
Hin1II CATG 1 cut(s) 100
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 1 cut(s) 148
Hpy166II GTNNAC 1 cut(s) 22
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 1 cut(s) 74
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4IV ACGT 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 1 cut(s) 100
Kzo9I GATC 1 cut(s) 45
LmnI GCTCC 2 cut(s) 95, 182
MaeII ACGT 1 cut(s) 186
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MnlI CCTC 3 cut(s) 19, 42, 104
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 1 cut(s) 117
NdeII GATC 1 cut(s) 45
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 2 cut(s) 91, 178
PfeI GAWTC 1 cut(s) 148
PkrI GCNGC 1 cut(s) 119
Ppu21I YACGTR 1 cut(s) 187
PspN4I GGNNCC 2 cut(s) 91, 178
SatI GCNGC 1 cut(s) 118
Sau3AI GATC 1 cut(s) 45
SetI ASST 3 cut(s) 11, 130, 189
SgeI CNNG 9 cut(s) 40, 65, 80, 86, 109, 122, 164, 185, 199
SsiI CCGC 3 cut(s) 109, 117, 190
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 1 cut(s) 19
TaiI ACGT 1 cut(s) 189
TauI GCSGC 1 cut(s) 120
TfiI GAWTC 1 cut(s) 148
TspDTI ATGAA 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.