Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002326

Physical Location & Seq

Genomic Coordinates Reverse (-)

17317150 .. 17317356

Gene Structure 207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG096200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGGCGTATGTAGATCACGCATTCTCCATCACCGACGAAGACATAATGATGGAGACCTCCTACACCGTCAACAACAAGCCTCCAATCAAAGAGATCGCTCTCGCCGTCGCCCTTCTCATCACCGGCACCCTCGGCATTGTCATCGGCTCCCTCATGGCCTATAACCACGTCGGCGGCGACAAAGCTCACGGTACCCCCCCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF872

Protein Analysis

68

Amino Acids

7.22

Weight (kDa)

4.93

Isoelectric Point (pI)

12.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19350 AT4G29850
fragaria_vesca	FvH4_4g06710 FvH4_4g06710 FvH4_4g06710 FvH4_4g06710 FvH4_4g06710 FvH4_4g06710
malus_domestica	MD13G1237400.v1.1 MD16G1242800.v1.1
prunus_persica	Prupe.1G069900_v2.0.a1
pyrus_communis	pycom16g20370
rosa_chinensis	RchiOBHm_Chr2g0106271 RchiOBHm_Chr3g0494811 RchiOBHm_Chr4g0391941 RchiOBHm_Chr4g0398651
rosa_laevigata	RLG00000009338
rosa_multiflora	Rmu_co8193946.1_g000001 Rmu_sc0002111.1_g000033 Rmu_sc0008691.1_g000007 Rmu_sc0014416.1_g000003
rosa_roxburghii	Rroxscaffold_5G00343600 Rroxscaffold_5G00359940 Rroxscaffold_5G00385380 Rroxscaffold_7G00172870
rosa_rugosa	Rorug04G0010000 Rorug04G0029400
rosa_samantha	Rh1AG130300 Rh1CG124100 Rh2AG185100 Rh2BG195400 Rh2CG190200 Rh2DG191300 Rh3AG317100 Rh3CG349400 Rh4AG088000 Rh4BG084600 Rh4CG096200 Rh4DG079500 Rh4DG154800
rosa_wichuraiana	Rw4G007290 Rw4G013320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	191
AccB1I	GGYRCC	2 cut(s)	125, 191
AciI	CCGC	1 cut(s)	174
AfaI	GTAC	1 cut(s)	193
AjiI	CACGTC	1 cut(s)	169
AluBI	AGCT	1 cut(s)	185
AluI	AGCT	1 cut(s)	185
Alw26I	GTCTC	1 cut(s)	47
AoxI	GGCC	1 cut(s)	156
Asp718I	GGTACC	1 cut(s)	191
AsuHPI	GGTGA	2 cut(s)	22, 112
BanI	GGYRCC	2 cut(s)	125, 191
BbsI	GAAGAC	1 cut(s)	45
BccI	CCATC	2 cut(s)	35, 43
BceAI	ACGGC	1 cut(s)	89
BcgI	CGANNNNNNTGC	2 cut(s)	124, 158
BcoDI	GTCTC	1 cut(s)	47
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
BmgBI	CACGTC	1 cut(s)	169
BmiI	GGNNCC	3 cut(s)	127, 148, 193
BpiI	GAAGAC	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	130
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bse118I	RCCGGY	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	130
BshFI	GGCC	1 cut(s)	158
BshNI	GGYRCC	2 cut(s)	125, 191
BsiSI	CCGG	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	47
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	158
Bso31I	GGTCTC	1 cut(s)	47
Bsp143I	GATC	2 cut(s)	13, 93
BspACI	CCGC	1 cut(s)	174
BspANI	GGCC	1 cut(s)	158
BspLI	GGNNCC	3 cut(s)	127, 148, 193
BspT107I	GGYRCC	2 cut(s)	125, 191
BspTNI	GGTCTC	1 cut(s)	47
BsrFI	RCCGGY	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	2 cut(s)	13, 93
Bst4CI	ACNGT	2 cut(s)	67, 191
BstKTI	GATC	2 cut(s)	16, 96
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	2 cut(s)	13, 93
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstV2I	GAAGAC	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	158
BtrI	CACGTC	1 cut(s)	169
Cfr10I	RCCGGY	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	192
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	4 cut(s)	79, 147, 158, 185
CviKI_1	RGCY	4 cut(s)	79, 147, 158, 185
CviQI	GTAC	1 cut(s)	192
DpnI	GATC	2 cut(s)	15, 95
DpnII	GATC	2 cut(s)	13, 93
Eco31I	GGTCTC	1 cut(s)	47
FaeI	CATG	1 cut(s)	157
FaiI	YATR	4 cut(s)	9, 44, 155, 162
FatI	CATG	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	175
GluI	GCNGC	1 cut(s)	175
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	1 cut(s)	123
Hin1II	CATG	1 cut(s)	157
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	2 cut(s)	22, 112
Hpy166II	GTNNAC	1 cut(s)	70
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	3 cut(s)	38, 110, 173
HpyAV	CCTTC	1 cut(s)	122
HpyCH4III	ACNGT	2 cut(s)	67, 191
HpyCH4IV	ACGT	1 cut(s)	168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	1 cut(s)	157
KpnI	GGTACC	1 cut(s)	195
Kzo9I	GATC	2 cut(s)	13, 93
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	1 cut(s)	136
MaeII	ACGT	1 cut(s)	168
MalI	GATC	2 cut(s)	15, 95
MboI	GATC	2 cut(s)	13, 93
MboII	GAAGA	1 cut(s)	50
MnlI	CCTC	4 cut(s)	67, 90, 140, 161
MslI	CAYNNNNRTG	1 cut(s)	47
MspI	CCGG	1 cut(s)	123
Mva1269I	GAATGC	1 cut(s)	20
MwoI	GCNNNNNNNGC	1 cut(s)	132
NdeII	GATC	2 cut(s)	13, 93
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	3 cut(s)	127, 148, 193
NmeAIII	GCCGAG	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 174
PctI	GAATGC	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	176
PspN4I	GGNNCC	3 cut(s)	127, 148, 193
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
RseI	CAYNNNNRTG	1 cut(s)	47
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	2 cut(s)	13, 93
SetI	ASST	4 cut(s)	59, 171, 187, 206
SgeI	CNNG	8 cut(s)	29, 88, 113, 135, 143, 166, 179, 200
SmiMI	CAYNNNNRTG	1 cut(s)	47
SsiI	CCGC	1 cut(s)	174
TaaI	ACNGT	2 cut(s)	67, 191
TaiI	ACGT	1 cut(s)	171
TauI	GCSGC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.