RchiOBHm_Chr4g0391941

Transmembrane protein 230-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002326
Physical Location & Seq
Forward (+)
7350495 .. 7352561
2067 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36472

Sequence Viewer

Length: 291 bp
ATGCATTCTCGATCCATTACCGACGAAGACATAATGATGGAGACCTCCTACACCGTCAACAACAAGCCTCCAATCAAAGAGATCGCTCTCGCCATTGCCCTTCTCGTCCTTGGCATTGTCGTCGGCTCCCTCATGGCCTATAACCGCGTCGGCGGCGACAAAGCTCACAGAATGTTCTTTGCGATTCTTGGTGGGATATTGTTCATTCAAGGCTCCTATTACGCCCGGATTACTTACTATGCTTACAACTCATACAAGGGATTCTCTTTCACCAACATACTGCCTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF872

Protein Analysis

96

Amino Acids

10.77

Weight (kDa)

8.96

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM_230_134 PF05915 24 - 93 1.6e-09 Transmembrane proteins 230/134
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 147
AciI CCGC 2 cut(s) 145, 153
AclWI GGATC 1 cut(s) 6
AgsI TTSAA 1 cut(s) 209
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 1 cut(s) 6
AoxI GGCC 1 cut(s) 135
AsuC2I CCSGG 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 33
BccI CCATC 1 cut(s) 31
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BcnI CCSGG 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 35
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
Bme1390I CCNGG 1 cut(s) 226
BmiI GGNNCC 2 cut(s) 127, 214
BmrFI CCNGG 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 33
BpuMI CCSGG 1 cut(s) 226
BsaI GGTCTC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 109
Bse3DI GCAATG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 109
BseMI GCAATG 1 cut(s) 93
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 1 cut(s) 137
BsiSI CCGG 1 cut(s) 226
BsmAI GTCTC 1 cut(s) 35
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 1 cut(s) 137
Bso31I GGTCTC 1 cut(s) 35
Bsp143I GATC 2 cut(s) 11, 81
BspACI CCGC 2 cut(s) 145, 153
BspANI GGCC 1 cut(s) 137
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 2 cut(s) 127, 214
BspPI GGATC 1 cut(s) 6
BspTNI GGTCTC 1 cut(s) 35
BsrDI GCAATG 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 2 cut(s) 11, 81
BssT1I CCWWGG 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 55
BstFNI CGCG 1 cut(s) 147
BstKTI GATC 2 cut(s) 14, 84
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 2 cut(s) 11, 81
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 224
BstUI CGCG 1 cut(s) 147
BstV2I GAAGAC 1 cut(s) 33
BsuRI GGCC 1 cut(s) 137
CseI GACGC 1 cut(s) 136
CviAII CATG 1 cut(s) 133
CviJI RGCY 5 cut(s) 67, 126, 137, 164, 213
CviKI_1 RGCY 5 cut(s) 67, 126, 137, 164, 213
DpnI GATC 2 cut(s) 13, 83
DpnII GATC 2 cut(s) 11, 81
Eco130I CCWWGG 1 cut(s) 109
Eco31I GGTCTC 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 109
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 1 cut(s) 136
FaiI YATR 7 cut(s) 32, 134, 141, 240, 253, 278, 287
FatI CATG 1 cut(s) 132
Fnu4HI GCNGC 1 cut(s) 154
Fsp4HI GCNGC 1 cut(s) 154
GluI GCNGC 1 cut(s) 154
HaeIII GGCC 1 cut(s) 137
HapII CCGG 1 cut(s) 226
HgaI GACGC 1 cut(s) 136
Hin1II CATG 1 cut(s) 136
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HinfI GANTC 2 cut(s) 184, 261
HpaII CCGG 1 cut(s) 226
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 1 cut(s) 58
Hpy188III TCNNGA 1 cut(s) 9
Hpy8I GTNNAC 1 cut(s) 58
Hpy99I CGWCG 3 cut(s) 26, 125, 152
HpyAV CCTTC 1 cut(s) 110
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
Hsp92II CATG 1 cut(s) 136
Kzo9I GATC 2 cut(s) 11, 81
LmnI GCTCC 2 cut(s) 131, 218
LpnPI CCDG 1 cut(s) 239
MalI GATC 2 cut(s) 13, 83
MboI GATC 2 cut(s) 11, 81
MboII GAAGA 1 cut(s) 38
MnlI CCTC 3 cut(s) 55, 78, 140
Mph1103I ATGCAT 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 35
MspI CCGG 1 cut(s) 226
MspR9I CCNGG 1 cut(s) 226
Mva1269I GAATGC 1 cut(s) 4
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 153
NciI CCSGG 1 cut(s) 226
NdeII GATC 2 cut(s) 11, 81
NlaIII CATG 1 cut(s) 136
NlaIV GGNNCC 2 cut(s) 127, 214
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 1 cut(s) 4
PfeI GAWTC 2 cut(s) 184, 261
PkrI GCNGC 1 cut(s) 155
PspN4I GGNNCC 2 cut(s) 127, 214
RseI CAYNNNNRTG 1 cut(s) 35
SatI GCNGC 1 cut(s) 154
Sau3AI GATC 2 cut(s) 11, 81
ScrFI CCNGG 1 cut(s) 226
SetI ASST 2 cut(s) 47, 166
SmiMI CAYNNNNRTG 1 cut(s) 35
SsiI CCGC 2 cut(s) 145, 153
StyD4I CCNGG 1 cut(s) 224
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 55
TaqI TCGA 1 cut(s) 10
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 2 cut(s) 184, 261
TspDTI ATGAA 1 cut(s) 193
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.