Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007680

Physical Location & Seq

Genomic Coordinates Reverse (-)

8808414 .. 8810200

Gene Structure 1787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G20430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGCAACTCACAATGTCAAGCTCCAAGATGAAAAGCCTCTTGAAAGGGCTCCGATACATTTCTCAAGTATTTGAAAGTGAAAAAGAAGAAGAAATACAAATCGGAAATCCAACGGACGTAAAACATGTTGCCCATATCGGTTGGGATGGACCATCCGCTAATGCCACCGCACCAAGCTGGATGACTGAGTTCAACTCCGGCGGGGGATTCGAATCTGCTGAAGGAGTCGGAGAAGATGATTCCTCCATAAAATGTATGTCGGAATATGGTGGTCGGTCTAGAGATTTGCCAAACCTACCAAAATCTACGAGGAAAGCAGCGTCCGAGAAAGGTTCTCCGACAAAAGACAAATCATCAGACAAAACTAAACGTCGCTCTTCTAACAAAGGGACATCGTCATCGTCGAGGAGACCAAAGGAAGCCACTGAAGAACAAGACGAGTTGTCTTCTTGGCCTAGTGGATTACCGGAAATTCCAAAGAAATCTAGGAGGAAGAAGAAGTCGACGAAAGAAACCGCGGTTAATGGAGGGTCATCAAGATCGACAAGAAGATCTGATGTCGATAACATGTCGGAATATATGTCTGAGACTGGTTCTGTGAGATCTATGCCTCAATTCGACAATAGAGATGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0051704 GO:0060560 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

212

Amino Acids

23.35

Weight (kDa)

9.06

Isoelectric Point (pI)

90.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PBD	PF00786	33 - 66	2.6e-06	P21-Rho-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20430 AT4G28556 AT4G28556
fragaria_vesca	FvH4_2g21080
malus_domestica	MD00G1200000.v1.1 MD05G1193500.v1.1 MD10G1180200.v1.1
prunus_persica	Prupe.8G220200_v2.0.a1 Prupe.8G220200_v2.0.a1
pyrus_communis	pycom05g18090 pycom10g15610
rosa_chinensis	RchiOBHm_Chr6g0287541
rosa_laevigata	RLG00000012486
rosa_roxburghii	Rroxscaffold_7G00180940 Rroxscaffold_7G00181390
rosa_rugosa	Rorug06G0188800 Rorug06G0188900 Rorug06G0188900
rosa_samantha	Rh6AG300100 Rh6BG305600 Rh6CG303900 Rh6CG313900 Rh6DG297300
rosa_wichuraiana	Rw6G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	503
AccII	CGCG	1 cut(s)	518
AciI	CCGC	5 cut(s)	156, 168, 201, 516, 518
AcsI	RAATTY	1 cut(s)	471
AcuI	CTGAAG	2 cut(s)	240, 447
AflIII	ACRYGT	2 cut(s)	124, 567
AgsI	TTSAA	3 cut(s)	43, 74, 193
AhdI	GACNNNNNGTC	1 cut(s)	442
AluBI	AGCT	2 cut(s)	21, 177
AluI	AGCT	2 cut(s)	21, 177
Alw26I	GTCTC	2 cut(s)	403, 581
AoxI	GGCC	1 cut(s)	452
ApeKI	GCWGC	1 cut(s)	317
ApoI	RAATTY	1 cut(s)	471
AspS9I	GGNCC	1 cut(s)	149
AsuII	TTCGAA	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	51
BarI	GAAGNNNNNNTAC	2 cut(s)	78, 110
BbsI	GAAGAC	1 cut(s)	438
BbvI	GCAGC	1 cut(s)	329
BccI	CCATC	2 cut(s)	140, 160
BcoDI	GTCTC	2 cut(s)	403, 581
BfaI	CTAG	3 cut(s)	279, 456, 486
BglII	AGATCT	2 cut(s)	551, 602
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
Bme18I	GGWCC	1 cut(s)	149
BmeRI	GACNNNNNGTC	1 cut(s)	442
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	438
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
Bpu14I	TTCGAA	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	48
BsaBI	GATNNNNATC	1 cut(s)	211
BsaI	GGTCTC	1 cut(s)	403
BsaJI	CCNNGG	1 cut(s)	516
BsaWI	WCCGGW	1 cut(s)	466
Bse1I	ACTGG	1 cut(s)	595
Bse8I	GATNNNNATC	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	516
BseGI	GGATG	3 cut(s)	151, 152, 186
BseJI	GATNNNNATC	1 cut(s)	211
BseMII	CTCAG	2 cut(s)	177, 576
BseNI	ACTGG	1 cut(s)	595
BseRI	GAGGAG	1 cut(s)	421
BseXI	GCAGC	1 cut(s)	329
Bsh1236I	CGCG	1 cut(s)	518
BshFI	GGCC	1 cut(s)	454
BsiSI	CCGG	2 cut(s)	198, 467
BslFI	GGGAC	1 cut(s)	403
BsmAI	GTCTC	2 cut(s)	403, 581
BsmFI	GGGAC	1 cut(s)	403
BsnI	GGCC	1 cut(s)	454
Bso31I	GGTCTC	1 cut(s)	403
Bsp119I	TTCGAA	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	3 cut(s)	539, 551, 602
BspACI	CCGC	5 cut(s)	156, 168, 201, 516, 518
BspANI	GGCC	1 cut(s)	454
BspCNI	CTCAG	2 cut(s)	178, 577
BspFNI	CGCG	1 cut(s)	518
BspLI	GGNNCC	1 cut(s)	50
BspQI	GCTCTTC	1 cut(s)	382
BspT104I	TTCGAA	1 cut(s)	210
BspTNI	GGTCTC	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	595
BssECI	CCNNGG	1 cut(s)	516
BssMI	GATC	3 cut(s)	539, 551, 602
Bst6I	CTCTTC	1 cut(s)	382
BstBI	TTCGAA	1 cut(s)	210
BstDEI	CTNAG	2 cut(s)	186, 585
BstDSI	CCRYGG	1 cut(s)	516
BstF5I	GGATG	3 cut(s)	151, 152, 186
BstFNI	CGCG	1 cut(s)	518
BstKTI	GATC	3 cut(s)	542, 554, 605
BstMAI	GTCTC	2 cut(s)	403, 581
BstMBI	GATC	3 cut(s)	539, 551, 602
BstNSI	RCATGY	2 cut(s)	128, 571
BstUI	CGCG	1 cut(s)	518
BstV1I	GCAGC	1 cut(s)	329
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	2 cut(s)	551, 602
BstYI	RGATCY	2 cut(s)	551, 602
BsuRI	GGCC	1 cut(s)	454
BtgI	CCRYGG	1 cut(s)	516
BtsCI	GGATG	3 cut(s)	151, 152, 186
BtsIMutI	CAGTG	1 cut(s)	423
Cfr13I	GGNCC	1 cut(s)	149
Cfr42I	CCGCGG	1 cut(s)	519
CseI	GACGC	1 cut(s)	309
CviAII	CATG	2 cut(s)	125, 568
CviJI	RGCY	6 cut(s)	21, 36, 49, 177, 422, 454
CviKI_1	RGCY	6 cut(s)	21, 36, 49, 177, 422, 454
DdeI	CTNAG	2 cut(s)	186, 585
DpnI	GATC	3 cut(s)	541, 553, 604
DpnII	GATC	3 cut(s)	539, 551, 602
DriI	GACNNNNNGTC	1 cut(s)	442
Eam1104I	CTCTTC	1 cut(s)	382
Eam1105I	GACNNNNNGTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	149
Eco57I	CTGAAG	2 cut(s)	240, 447
EcoT38I	GRGCYC	1 cut(s)	51
FaeI	CATG	2 cut(s)	128, 571
FaiI	YATR	9 cut(s)	126, 135, 248, 257, 267, 569, 579, 581, 608
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	2 cut(s)	124, 567
FauI	CCCGC	1 cut(s)	194
FblI	GTMKAC	1 cut(s)	503
Fnu4HI	GCNGC	1 cut(s)	318
FokI	GGATG	3 cut(s)	139, 158, 193
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	318
FspBI	CTAG	3 cut(s)	279, 456, 486
GluI	GCNGC	1 cut(s)	318
HaeIII	GGCC	1 cut(s)	454
HapII	CCGG	2 cut(s)	198, 467
HgaI	GACGC	1 cut(s)	309
Hin1II	CATG	2 cut(s)	128, 571
HincII	GTYRAC	1 cut(s)	504
HindII	GTYRAC	1 cut(s)	504
HinfI	GANTC	4 cut(s)	207, 212, 225, 239
HpaII	CCGG	2 cut(s)	198, 467
Hpy166II	GTNNAC	1 cut(s)	504
Hpy188III	TCNNGA	3 cut(s)	40, 279, 537
Hpy8I	GTNNAC	1 cut(s)	504
Hpy99I	CGWCG	3 cut(s)	375, 406, 508
HpyAV	CCTTC	1 cut(s)	215
HpyCH4IV	ACGT	2 cut(s)	117, 370
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	2 cut(s)	186, 585
HpySE526I	ACGT	2 cut(s)	117, 370
Hsp92II	CATG	2 cut(s)	128, 571
KspI	CCGCGG	1 cut(s)	519
Kzo9I	GATC	3 cut(s)	539, 551, 602
LguI	GCTCTTC	1 cut(s)	382
LmnI	GCTCC	2 cut(s)	26, 54
LpnPI	CCDG	4 cut(s)	163, 211, 480, 576
Lsp1109I	GCAGC	1 cut(s)	329
MaeI	CTAG	3 cut(s)	279, 456, 486
MaeII	ACGT	2 cut(s)	117, 370
MalI	GATC	3 cut(s)	541, 553, 604
MboI	GATC	3 cut(s)	539, 551, 602
MboII	GAAGA	9 cut(s)	98, 101, 245, 369, 438, 440, 505, 508, 561
MflI	RGATCY	2 cut(s)	551, 602
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	2 cut(s)	471, 614
MlyI	GAGTC	1 cut(s)	234
MmeI	TCCRAC	5 cut(s)	134, 208, 240, 362, 552
MnlI	CCTC	7 cut(s)	47, 253, 303, 399, 483, 521, 621
MseI	TTAA	1 cut(s)	522
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	2 cut(s)	198, 467
MvnI	CGCG	1 cut(s)	518
NdeII	GATC	3 cut(s)	539, 551, 602
NlaIII	CATG	2 cut(s)	128, 571
NlaIV	GGNNCC	1 cut(s)	50
NspI	RCATGY	2 cut(s)	128, 571
NspV	TTCGAA	1 cut(s)	210
PciI	ACATGT	2 cut(s)	124, 567
PciSI	GCTCTTC	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	1 cut(s)	401
PfeI	GAWTC	3 cut(s)	207, 212, 239
PflFI	GACNNNGTC	1 cut(s)	394
PkrI	GCNGC	1 cut(s)	319
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
PscI	ACATGT	2 cut(s)	124, 567
PspN4I	GGNNCC	1 cut(s)	50
PspPI	GGNCC	1 cut(s)	149
PsuI	RGATCY	2 cut(s)	551, 602
PsyI	GACNNNGTC	1 cut(s)	394
SacII	CCGCGG	1 cut(s)	519
SalI	GTCGAC	1 cut(s)	502
SapI	GCTCTTC	1 cut(s)	382
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	1 cut(s)	318
Sau3AI	GATC	3 cut(s)	539, 551, 602
Sau96I	GGNCC	1 cut(s)	149
SchI	GAGTC	1 cut(s)	234
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	6 cut(s)	23, 120, 179, 297, 334, 373
Sfr303I	CCGCGG	1 cut(s)	519
SfuI	TTCGAA	1 cut(s)	210
SgrBI	CCGCGG	1 cut(s)	519
SinI	GGWCC	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
Sse9I	AATT	2 cut(s)	471, 614
SsiI	CCGC	5 cut(s)	156, 168, 201, 516, 518
SspMI	CTAG	3 cut(s)	279, 456, 486
TaiI	ACGT	2 cut(s)	120, 373
TaqI	TCGA	6 cut(s)	210, 404, 503, 542, 561, 618
TaqII	GACCGA	1 cut(s)	264
TasI	AATT	2 cut(s)	471, 614
TfiI	GAWTC	3 cut(s)	207, 212, 239
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	1 cut(s)	430
TseI	GCWGC	1 cut(s)	317
TspDTI	ATGAA	1 cut(s)	44
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	1 cut(s)	430
Tth111I	GACNNNGTC	1 cut(s)	394
VpaK11BI	GGWCC	1 cut(s)	149
XapI	RAATTY	1 cut(s)	471
XbaI	TCTAGA	1 cut(s)	278
XceI	RCATGY	2 cut(s)	128, 571
XmiI	GTMKAC	1 cut(s)	503
XspI	CTAG	3 cut(s)	279, 456, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.