Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007680

Physical Location & Seq

Genomic Coordinates Forward (+)

14114104 .. 14115897

Gene Structure 1794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G28556.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCAACTTGGAATGTCAAGTACCAAGATGAAAAGTCTCTTGAAAGGCCTCCGATACATATCTCAAGTTTTTGCAATAGAAGGTGAAAAGGAAGAAGAGATGCAAATAGGAAATCCAACGGACGTAAAGCATGTTGCCCACATTGGTTGGGATGGACCGTCTGATAATGCCACTGCACCTAGCTGGATGAACGATTTCAAGAGTTCTCCTGTAATGGAATCAATTCAAGGATTAGGAGAAGACGATTCCTCAGTGAAATGTCAATCAGAGTTTGGTGGTCGGACTAGAGATTTACCAAAACTACCAAAATCCACGAGAAAATCATCGTCTGAGAAAGGTTCTCCGACCAAAGAAAGATCAGACAAGACCAAACGTCGGACTTCAAACAAAGGCACATCATCGTCTAGGAGAACCAAAGACGAAGATTCTACCTCATCGTCTAGGAGAACAACTAAAGATGAAGATTCTTCTTTGTCTCAACATAGTGCTGGATTACCAGAGGTTCCAAAGAAGTCAAAGAGAAAGAAATCTAAAGAAGCTGGTAATGGAGGGTCTTCGAGATCATCACGAATATCAGAAGCTGATTATATGTCTGATACTGGTTCCGATAGATCTATGCCTCAATTTGAAGACGACAGAAATGGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0051704 GO:0060560 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

216

Amino Acids

23.75

Weight (kDa)

9.32

Isoelectric Point (pI)

78.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PBD	PF00786	35 - 70	8e-08	P21-Rho-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20430 AT4G28556 AT4G28556
fragaria_vesca	FvH4_2g21080
malus_domestica	MD00G1200000.v1.1 MD05G1193500.v1.1 MD10G1180200.v1.1
prunus_persica	Prupe.8G220200_v2.0.a1 Prupe.8G220200_v2.0.a1
pyrus_communis	pycom05g18090 pycom10g15610
rosa_chinensis	RchiOBHm_Chr6g0287541
rosa_laevigata	RLG00000012486
rosa_roxburghii	Rroxscaffold_7G00180940 Rroxscaffold_7G00181390
rosa_rugosa	Rorug06G0188800 Rorug06G0188900 Rorug06G0188900
rosa_samantha	Rh6AG300100 Rh6BG305600 Rh6CG303900 Rh6CG313900 Rh6DG297300
rosa_wichuraiana	Rw6G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	375
AgsI	TTSAA	5 cut(s)	43, 199, 227, 384, 629
AhdI	GACNNNNNGTC	1 cut(s)	372
AluBI	AGCT	3 cut(s)	183, 539, 581
AluI	AGCT	3 cut(s)	183, 539, 581
Alw26I	GTCTC	2 cut(s)	41, 480
AlwNI	CAGNNNCTG	1 cut(s)	581
AoxI	GGCC	1 cut(s)	46
Asp700I	GAANNNNTTC	2 cut(s)	194, 222
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	155
BauI	CACGAG	1 cut(s)	313
BbsI	GAAGAC	3 cut(s)	246, 546, 636
BccI	CCATC	1 cut(s)	146
BcoDI	GTCTC	2 cut(s)	41, 480
BfaI	CTAG	4 cut(s)	180, 285, 405, 441
BglII	AGATCT	1 cut(s)	611
Bme18I	GGWCC	1 cut(s)	155
BmeRI	GACNNNNNGTC	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	2 cut(s)	504, 604
BmsI	GCATC	1 cut(s)	90
BpiI	GAAGAC	3 cut(s)	246, 546, 636
BpuEI	CTTGAG	1 cut(s)	48
BsaBI	GATNNNNATC	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	1 cut(s)	375
Bse1I	ACTGG	1 cut(s)	604
Bse8I	GATNNNNATC	1 cut(s)	58
BseGI	GGATG	2 cut(s)	157, 192
BseJI	GATNNNNATC	1 cut(s)	58
BseLI	CCNNNNNNNGG	1 cut(s)	375
BseMII	CTCAG	2 cut(s)	264, 321
BseNI	ACTGG	1 cut(s)	604
BsgI	GTGCAG	1 cut(s)	159
BshFI	GGCC	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	375
BsmAI	GTCTC	2 cut(s)	41, 480
BsnI	GGCC	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	356, 560, 611
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	2 cut(s)	263, 322
BspLI	GGNNCC	2 cut(s)	504, 604
BsrI	ACTGG	1 cut(s)	604
BssMI	GATC	3 cut(s)	356, 560, 611
BssSI	CACGAG	1 cut(s)	313
Bst2BI	CACGAG	1 cut(s)	313
Bst4CI	ACNGT	1 cut(s)	159
Bst6I	CTCTTC	1 cut(s)	90
BstDEI	CTNAG	2 cut(s)	250, 330
BstF5I	GGATG	2 cut(s)	157, 192
BstKTI	GATC	3 cut(s)	359, 563, 614
BstMAI	GTCTC	2 cut(s)	41, 480
BstMBI	GATC	3 cut(s)	356, 560, 611
BstNSI	RCATGY	1 cut(s)	134
BstV2I	GAAGAC	3 cut(s)	246, 546, 636
BstX2I	RGATCY	1 cut(s)	611
BstYI	RGATCY	1 cut(s)	611
BsuRI	GGCC	1 cut(s)	48
BtsCI	GGATG	2 cut(s)	157, 192
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	2 cut(s)	171, 258
CaiI	CAGNNNCTG	1 cut(s)	581
Cfr13I	GGNCC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	21
CspCI	CAANNNNNGTGG	2 cut(s)	128, 163
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	4 cut(s)	48, 183, 539, 581
CviKI_1	RGCY	4 cut(s)	48, 183, 539, 581
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	2 cut(s)	250, 330
DpnI	GATC	3 cut(s)	358, 562, 613
DpnII	GATC	3 cut(s)	356, 560, 611
DriI	GACNNNNNGTC	1 cut(s)	372
Eam1104I	CTCTTC	1 cut(s)	90
Eam1105I	GACNNNNNGTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	90
Eco147I	AGGCCT	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	155
FaeI	CATG	1 cut(s)	134
FaiI	YATR	6 cut(s)	59, 132, 483, 588, 590, 617
FatI	CATG	1 cut(s)	130
FokI	GGATG	2 cut(s)	164, 199
FspBI	CTAG	4 cut(s)	180, 285, 405, 441
HaeIII	GGCC	1 cut(s)	48
Hin1II	CATG	1 cut(s)	134
HinfI	GANTC	4 cut(s)	218, 245, 425, 464
HphI	GGTGA	1 cut(s)	95
Hpy188III	TCNNGA	4 cut(s)	40, 199, 558, 567
Hpy99I	CGWCG	1 cut(s)	378
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4IV	ACGT	2 cut(s)	123, 373
HpyCH4V	TGCA	4 cut(s)	4, 74, 103, 176
HpyF3I	CTNAG	2 cut(s)	250, 330
HpySE526I	ACGT	2 cut(s)	123, 373
Hsp92II	CATG	1 cut(s)	134
Kzo9I	GATC	3 cut(s)	356, 560, 611
LpnPI	CCDG	6 cut(s)	169, 222, 474, 510, 525, 585
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	4 cut(s)	180, 285, 405, 441
MaeII	ACGT	2 cut(s)	123, 373
MalI	GATC	3 cut(s)	358, 562, 613
MboI	GATC	3 cut(s)	356, 560, 611
MboII	GAAGA	8 cut(s)	104, 107, 251, 434, 459, 473, 546, 641
MflI	RGATCY	1 cut(s)	611
MluCI	AATT	2 cut(s)	222, 623
MmeI	TCCRAC	4 cut(s)	140, 260, 356, 368
MnlI	CCTC	6 cut(s)	59, 259, 442, 493, 542, 630
MroXI	GAANNNNTTC	2 cut(s)	194, 222
NdeII	GATC	3 cut(s)	356, 560, 611
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	2 cut(s)	504, 604
NspI	RCATGY	1 cut(s)	134
PceI	AGGCCT	1 cut(s)	48
PdmI	GAANNNNTTC	2 cut(s)	194, 222
PfeI	GAWTC	4 cut(s)	218, 245, 425, 464
PspN4I	GGNNCC	2 cut(s)	504, 604
PspPI	GGNCC	1 cut(s)	155
PstNI	CAGNNNCTG	1 cut(s)	581
PsuI	RGATCY	1 cut(s)	611
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
Sau3AI	GATC	3 cut(s)	356, 560, 611
Sau96I	GGNCC	1 cut(s)	155
SfaNI	GCATC	1 cut(s)	90
SinI	GGWCC	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
Sse9I	AATT	2 cut(s)	222, 623
SseBI	AGGCCT	1 cut(s)	48
SspMI	CTAG	4 cut(s)	180, 285, 405, 441
StuI	AGGCCT	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	159
TaiI	ACGT	2 cut(s)	126, 376
TaqI	TCGA	1 cut(s)	557
TasI	AATT	2 cut(s)	222, 623
TfiI	GAWTC	4 cut(s)	218, 245, 425, 464
TscAI	CASTG	2 cut(s)	178, 258
TspDTI	ATGAA	3 cut(s)	44, 203, 474
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	2 cut(s)	178, 258
VpaK11BI	GGWCC	1 cut(s)	155
XceI	RCATGY	1 cut(s)	134
XmnI	GAANNNNTTC	2 cut(s)	194, 222
XspI	CTAG	4 cut(s)	180, 285, 405, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.