Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007680

Physical Location & Seq

Genomic Coordinates Reverse (-)

49900397 .. 49904559

Gene Structure 4163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG313900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGTCGAATAAAGAAAATAGCAGTAAGATGAAGGGCCTCTTAAAAGGCCTGAGATACATTTCTCAAATGTTTGATGATGACAAAGAACAAGAAATACAGATTGGGTTTCCTACAGACGTAAAGCATGTGGCTCATATAGGCTGGGATGGTCCATCAACGGCAAGTAGTTCTCCAAGCTGGATGAATGAGTTTCAATCTCCACCAGGATTTGCATCAGCACCTTTAAGTCAGAATGGCGAGATGACCGACAATAATATGGTCAAATGTATCTCTGAAGATTCAAGCCGGAGAAGTTCAAAGAGTTCAATGTCTCCGACACATGACCCTGAATTGCCCAAGTCATCGAGAAGGCAATCATCACGGGGGCATGAAGGAGGTGGTGGTGGAACTGAATCCCCAAGGGAAAAATCAGATAAACCTAGGCAAACAAGAAGGCCTTCTAGGAGGGACTTATCGGAGGGTAATAGAGGCAGCCCTCAGGAAGCCACAGATACAAGTAGCGAATCCTCCCTACCGGATATCCCCAAGAAATCACGGCGGAAGAAATCAAAAGAATCGGCGATTGGGGGGTCCAAAAAAAAAAAAAATCCTGGCACCCCATCTACAGCAAAGTCCAATAGCATTGAGCTATCTCAGAATTCTTTTCAAGAGGGGGAAGACAAGGGGTTTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

224

Amino Acids

24.46

Weight (kDa)

9.47

Isoelectric Point (pI)

85.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20430 AT4G28556 AT4G28556
fragaria_vesca	FvH4_2g21080
malus_domestica	MD00G1200000.v1.1 MD05G1193500.v1.1 MD10G1180200.v1.1
prunus_persica	Prupe.8G220200_v2.0.a1 Prupe.8G220200_v2.0.a1
pyrus_communis	pycom05g18090 pycom10g15610
rosa_chinensis	RchiOBHm_Chr6g0287541
rosa_laevigata	RLG00000012486
rosa_roxburghii	Rroxscaffold_7G00180940 Rroxscaffold_7G00181390
rosa_rugosa	Rorug06G0188800 Rorug06G0188900 Rorug06G0188900
rosa_samantha	Rh6AG300100 Rh6BG305600 Rh6CG303900 Rh6CG313900 Rh6DG297300
rosa_wichuraiana	Rw6G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	593
AciI	CCGC	1 cut(s)	538
AcsI	RAATTY	1 cut(s)	637
AcuI	CTGAAG	1 cut(s)	294
AgsI	TTSAA	5 cut(s)	194, 282, 297, 306, 647
AjnI	CCWGG	2 cut(s)	202, 589
AjuI	GAANNNNNNNTTGG	4 cut(s)	84, 116, 546, 578
AluBI	AGCT	2 cut(s)	177, 628
AluI	AGCT	2 cut(s)	177, 628
Alw26I	GTCTC	1 cut(s)	315
AoxI	GGCC	3 cut(s)	34, 46, 434
ApeKI	GCWGC	1 cut(s)	471
ApoI	RAATTY	1 cut(s)	637
Asp700I	GAANNNNTTC	1 cut(s)	436
AspA2I	CCTAGG	1 cut(s)	419
AspS9I	GGNCC	3 cut(s)	34, 149, 570
AvaII	GGWCC	2 cut(s)	149, 570
AvrII	CCTAGG	1 cut(s)	419
AxyI	CCTNAGG	1 cut(s)	477
BanI	GGYRCC	1 cut(s)	593
BbsI	GAAGAC	1 cut(s)	663
BbvI	GCAGC	1 cut(s)	483
BccI	CCATC	3 cut(s)	140, 160, 607
BceAI	ACGGC	2 cut(s)	174, 551
BciT130I	CCWGG	2 cut(s)	204, 591
BcoDI	GTCTC	1 cut(s)	315
BfaI	CTAG	2 cut(s)	420, 441
BfmI	CTRYAG	2 cut(s)	111, 603
BisI	GCNGC	1 cut(s)	472
BlnI	CCTAGG	1 cut(s)	419
BlsI	GCNGC	1 cut(s)	473
Bme1390I	CCNGG	2 cut(s)	204, 591
Bme18I	GGWCC	2 cut(s)	149, 570
BmgT120I	GGNCC	3 cut(s)	34, 149, 570
BmiI	GGNNCC	2 cut(s)	571, 595
BmrFI	CCNGG	2 cut(s)	204, 591
BmsI	GCATC	1 cut(s)	221
BpiI	GAAGAC	1 cut(s)	663
BsaBI	GATNNNNATC	1 cut(s)	211
BsaJI	CCNNGG	2 cut(s)	398, 419
BsaWI	WCCGGW	1 cut(s)	514
Bse21I	CCTNAGG	1 cut(s)	477
Bse8I	GATNNNNATC	1 cut(s)	211
BseBI	CCWGG	2 cut(s)	204, 591
BseDI	CCNNGG	2 cut(s)	398, 419
BseGI	GGATG	2 cut(s)	151, 186
BseJI	GATNNNNATC	1 cut(s)	211
BseMII	CTCAG	3 cut(s)	41, 491, 647
BseXI	GCAGC	1 cut(s)	483
BseYI	CCCAGC	1 cut(s)	141
BshFI	GGCC	3 cut(s)	36, 48, 436
BshNI	GGYRCC	1 cut(s)	593
BsiSI	CCGG	2 cut(s)	286, 515
BslFI	GGGAC	1 cut(s)	461
BsmAI	GTCTC	1 cut(s)	315
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	3 cut(s)	36, 48, 436
BspACI	CCGC	1 cut(s)	538
BspANI	GGCC	3 cut(s)	36, 48, 436
BspCNI	CTCAG	3 cut(s)	42, 490, 646
BspLI	GGNNCC	2 cut(s)	571, 595
BspT107I	GGYRCC	1 cut(s)	593
BssECI	CCNNGG	2 cut(s)	398, 419
BssT1I	CCWWGG	2 cut(s)	398, 419
Bst2UI	CCWGG	2 cut(s)	204, 591
BstDEI	CTNAG	3 cut(s)	50, 477, 633
BstF5I	GGATG	2 cut(s)	151, 186
BstMAI	GTCTC	1 cut(s)	315
BstNI	CCWGG	2 cut(s)	204, 591
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	2 cut(s)	202, 589
BstSFI	CTRYAG	2 cut(s)	111, 603
BstV1I	GCAGC	1 cut(s)	483
BstV2I	GAAGAC	1 cut(s)	663
Bsu36I	CCTNAGG	1 cut(s)	477
BsuRI	GGCC	3 cut(s)	36, 48, 436
BtsCI	GGATG	2 cut(s)	151, 186
Cfr13I	GGNCC	3 cut(s)	34, 149, 570
CviAII	CATG	3 cut(s)	125, 320, 368
DdeI	CTNAG	3 cut(s)	50, 477, 633
EciI	GGCGGA	1 cut(s)	553
Eco130I	CCWWGG	2 cut(s)	398, 419
Eco147I	AGGCCT	2 cut(s)	48, 436
Eco32I	GATATC	1 cut(s)	520
Eco47I	GGWCC	2 cut(s)	149, 570
Eco57I	CTGAAG	1 cut(s)	294
Eco81I	CCTNAGG	1 cut(s)	477
EcoO109I	RGGNCCY	1 cut(s)	34
EcoRI	GAATTC	1 cut(s)	637
EcoRII	CCWGG	2 cut(s)	202, 589
EcoRV	GATATC	1 cut(s)	520
EcoT14I	CCWWGG	2 cut(s)	398, 419
ErhI	CCWWGG	2 cut(s)	398, 419
FaeI	CATG	3 cut(s)	128, 323, 371
FaiI	YATR	8 cut(s)	126, 135, 137, 257, 321, 369, 671, 673
FalI	AAGNNNNNCTT	4 cut(s)	23, 55, 421, 453
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	3 cut(s)	124, 319, 367
Fnu4HI	GCNGC	1 cut(s)	472
FokI	GGATG	2 cut(s)	158, 193
Fsp4HI	GCNGC	1 cut(s)	472
FspBI	CTAG	2 cut(s)	420, 441
GluI	GCNGC	1 cut(s)	472
GsaI	CCCAGC	1 cut(s)	145
HaeIII	GGCC	3 cut(s)	36, 48, 436
HapII	CCGG	2 cut(s)	286, 515
Hin1II	CATG	3 cut(s)	128, 323, 371
HinfI	GANTC	4 cut(s)	278, 392, 503, 554
HpaII	CCGG	2 cut(s)	286, 515
Hpy188I	TCNGA	6 cut(s)	231, 274, 315, 412, 457, 636
Hpy188III	TCNNGA	3 cut(s)	345, 479, 647
HpyAV	CCTTC	5 cut(s)	25, 342, 365, 426, 447
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	1 cut(s)	212
HpyF3I	CTNAG	3 cut(s)	50, 477, 633
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	3 cut(s)	128, 323, 371
Lsp1109I	GCAGC	1 cut(s)	483
LweI	GCATC	1 cut(s)	221
MaeI	CTAG	2 cut(s)	420, 441
MaeII	ACGT	1 cut(s)	117
MboII	GAAGA	3 cut(s)	287, 553, 668
MluCI	AATT	2 cut(s)	329, 637
MmeI	TCCRAC	1 cut(s)	338
MnlI	CCTC	8 cut(s)	47, 368, 438, 451, 461, 486, 517, 643
MroXI	GAANNNNTTC	1 cut(s)	436
MseI	TTAA	2 cut(s)	41, 224
MspI	CCGG	2 cut(s)	286, 515
MspR9I	CCNGG	2 cut(s)	204, 591
MvaI	CCWGG	2 cut(s)	204, 591
NlaIII	CATG	3 cut(s)	128, 323, 371
NlaIV	GGNNCC	2 cut(s)	571, 595
NspI	RCATGY	1 cut(s)	128
PceI	AGGCCT	2 cut(s)	48, 436
PdmI	GAANNNNTTC	1 cut(s)	436
PfeI	GAWTC	4 cut(s)	278, 392, 503, 554
PkrI	GCNGC	1 cut(s)	473
Psp6I	CCWGG	2 cut(s)	202, 589
PspFI	CCCAGC	1 cut(s)	141
PspGI	CCWGG	2 cut(s)	202, 589
PspN4I	GGNNCC	2 cut(s)	571, 595
PspPI	GGNCC	3 cut(s)	34, 149, 570
PsrI	GAACNNNNNNTAC	2 cut(s)	78, 110
SaqAI	TTAA	2 cut(s)	41, 224
SatI	GCNGC	1 cut(s)	472
Sau96I	GGNCC	3 cut(s)	34, 149, 570
ScrFI	CCNGG	2 cut(s)	204, 591
SetI	ASST	6 cut(s)	120, 179, 223, 379, 421, 630
SfaNI	GCATC	1 cut(s)	221
SfcI	CTRYAG	2 cut(s)	111, 603
SinI	GGWCC	2 cut(s)	149, 570
Sse9I	AATT	2 cut(s)	329, 637
SseBI	AGGCCT	2 cut(s)	48, 436
SsiI	CCGC	1 cut(s)	538
SspMI	CTAG	2 cut(s)	420, 441
StuI	AGGCCT	2 cut(s)	48, 436
StyD4I	CCNGG	2 cut(s)	202, 589
StyI	CCWWGG	2 cut(s)	398, 419
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	2 cut(s)	5, 344
TaqII	GACCGA	1 cut(s)	260
TasI	AATT	2 cut(s)	329, 637
TfiI	GAWTC	4 cut(s)	278, 392, 503, 554
Tru1I	TTAA	2 cut(s)	41, 224
Tru9I	TTAA	2 cut(s)	41, 224
TseI	GCWGC	1 cut(s)	471
TspDTI	ATGAA	3 cut(s)	44, 197, 384
VpaK11BI	GGWCC	2 cut(s)	149, 570
XapI	RAATTY	1 cut(s)	637
XceI	RCATGY	1 cut(s)	128
XmaJI	CCTAGG	1 cut(s)	419
XmnI	GAANNNNTTC	1 cut(s)	436
XspI	CTAG	2 cut(s)	420, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.