Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007680

Physical Location & Seq

Genomic Coordinates Reverse (-)

49929936 .. 49934098

Gene Structure 4163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG297300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGATATTTATTTACACACACATATTGAGGCCTGAGGGAAATTGTCACACTCATTTGTCAGATGATGACAAAGAACAAGAAATACAGATTGGGTTTCCTACAGACGTAAAGCATGTGGCTCATATAGGCTGGGATGGTCCATCAACGATGAATGAGTTTCAATCTCCACCAGGATTTGCATCAGCACCTTTAAGTCAGAATGGCGAGATGACCGACAATAATATGGTCAAATGTATCTCTGAAGATTCAAGCCGGAGAAGTTCAAAGAGTTCAATGTCTCCGACACATGACCCTGAATTGCCCAAGTCATCGAGAAGGCAATCATCACGGGGGCATGAAGGAGGTGGTGGTGGAACTGAATCCCCAAGGGAAAAATCAGATAAACCTAGGCAAACAAGAAGGCCTTCTAGGAGGGACTTATCGGAGGGTAATAGAGGCAGCCCTCAGGAAGCCACAGATACAAGTAGCGAATCCTCCCTACCGGATATCCCCAAGAAATCACGGCGGAAGAAATCAAAAGAATCGGCGATTGGGGGGTCCAAAAAAAAAAAAAATCCTGGCACCCCATCTACAGCAAAGTCCAATAGCATTGAGCTATCTCAGAATTCTTTTCAAGAGGGGGAAGACAAGGGGTTTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

213

Amino Acids

23.35

Weight (kDa)

8.83

Isoelectric Point (pI)

83.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20430 AT4G28556 AT4G28556
fragaria_vesca	FvH4_2g21080
malus_domestica	MD00G1200000.v1.1 MD05G1193500.v1.1 MD10G1180200.v1.1
prunus_persica	Prupe.8G220200_v2.0.a1 Prupe.8G220200_v2.0.a1
pyrus_communis	pycom05g18090 pycom10g15610
rosa_chinensis	RchiOBHm_Chr6g0287541
rosa_laevigata	RLG00000012486
rosa_roxburghii	Rroxscaffold_7G00180940 Rroxscaffold_7G00181390
rosa_rugosa	Rorug06G0188800 Rorug06G0188900 Rorug06G0188900
rosa_samantha	Rh6AG300100 Rh6BG305600 Rh6CG303900 Rh6CG313900 Rh6DG297300
rosa_wichuraiana	Rw6G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	560
AciI	CCGC	1 cut(s)	505
AcsI	RAATTY	1 cut(s)	604
AcuI	CTGAAG	1 cut(s)	261
AgsI	TTSAA	5 cut(s)	161, 249, 264, 273, 614
AjnI	CCWGG	2 cut(s)	169, 556
AjuI	GAANNNNNNNTTGG	4 cut(s)	72, 104, 513, 545
AluBI	AGCT	1 cut(s)	595
AluI	AGCT	1 cut(s)	595
Alw26I	GTCTC	1 cut(s)	282
AoxI	GGCC	2 cut(s)	29, 401
ApeKI	GCWGC	1 cut(s)	438
ApoI	RAATTY	1 cut(s)	604
Asp700I	GAANNNNTTC	1 cut(s)	403
AspA2I	CCTAGG	1 cut(s)	386
AspS9I	GGNCC	2 cut(s)	137, 537
AvaII	GGWCC	2 cut(s)	137, 537
AvrII	CCTAGG	1 cut(s)	386
AxyI	CCTNAGG	2 cut(s)	33, 444
BanI	GGYRCC	1 cut(s)	560
BbsI	GAAGAC	1 cut(s)	630
BbvI	GCAGC	1 cut(s)	450
BccI	CCATC	3 cut(s)	128, 148, 574
BceAI	ACGGC	1 cut(s)	518
BciT130I	CCWGG	2 cut(s)	171, 558
BcoDI	GTCTC	1 cut(s)	282
BfaI	CTAG	2 cut(s)	387, 408
BfmI	CTRYAG	2 cut(s)	99, 570
BisI	GCNGC	1 cut(s)	439
BlnI	CCTAGG	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	440
Bme1390I	CCNGG	2 cut(s)	171, 558
Bme18I	GGWCC	2 cut(s)	137, 537
BmgT120I	GGNCC	2 cut(s)	137, 537
BmiI	GGNNCC	2 cut(s)	538, 562
BmrFI	CCNGG	2 cut(s)	171, 558
BmsI	GCATC	1 cut(s)	188
BpiI	GAAGAC	1 cut(s)	630
BsaBI	GATNNNNATC	1 cut(s)	178
BsaJI	CCNNGG	2 cut(s)	365, 386
BsaWI	WCCGGW	1 cut(s)	481
Bse21I	CCTNAGG	2 cut(s)	33, 444
Bse8I	GATNNNNATC	1 cut(s)	178
BseBI	CCWGG	2 cut(s)	171, 558
BseDI	CCNNGG	2 cut(s)	365, 386
BseGI	GGATG	1 cut(s)	139
BseJI	GATNNNNATC	1 cut(s)	178
BseMII	CTCAG	3 cut(s)	24, 458, 614
BseXI	GCAGC	1 cut(s)	450
BseYI	CCCAGC	1 cut(s)	129
BshFI	GGCC	2 cut(s)	31, 403
BshNI	GGYRCC	1 cut(s)	560
BsiSI	CCGG	2 cut(s)	253, 482
BslFI	GGGAC	1 cut(s)	428
BsmAI	GTCTC	1 cut(s)	282
BsmFI	GGGAC	1 cut(s)	428
BsnI	GGCC	2 cut(s)	31, 403
BspACI	CCGC	1 cut(s)	505
BspANI	GGCC	2 cut(s)	31, 403
BspCNI	CTCAG	3 cut(s)	25, 457, 613
BspLI	GGNNCC	2 cut(s)	538, 562
BspT107I	GGYRCC	1 cut(s)	560
BssECI	CCNNGG	2 cut(s)	365, 386
BssT1I	CCWWGG	2 cut(s)	365, 386
Bst2UI	CCWGG	2 cut(s)	171, 558
BstDEI	CTNAG	3 cut(s)	33, 444, 600
BstF5I	GGATG	1 cut(s)	139
BstMAI	GTCTC	1 cut(s)	282
BstNI	CCWGG	2 cut(s)	171, 558
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	2 cut(s)	169, 556
BstSFI	CTRYAG	2 cut(s)	99, 570
BstV1I	GCAGC	1 cut(s)	450
BstV2I	GAAGAC	1 cut(s)	630
Bsu36I	CCTNAGG	2 cut(s)	33, 444
BsuRI	GGCC	2 cut(s)	31, 403
BtsCI	GGATG	1 cut(s)	139
Cfr13I	GGNCC	2 cut(s)	137, 537
CviAII	CATG	3 cut(s)	113, 287, 335
CviJI	RGCY	8 cut(s)	31, 119, 129, 252, 403, 441, 452, 595
CviKI_1	RGCY	8 cut(s)	31, 119, 129, 252, 403, 441, 452, 595
DdeI	CTNAG	3 cut(s)	33, 444, 600
EciI	GGCGGA	1 cut(s)	520
Eco130I	CCWWGG	2 cut(s)	365, 386
Eco147I	AGGCCT	2 cut(s)	31, 403
Eco32I	GATATC	1 cut(s)	487
Eco47I	GGWCC	2 cut(s)	137, 537
Eco57I	CTGAAG	1 cut(s)	261
Eco81I	CCTNAGG	2 cut(s)	33, 444
EcoRI	GAATTC	1 cut(s)	604
EcoRII	CCWGG	2 cut(s)	169, 556
EcoRV	GATATC	1 cut(s)	487
EcoT14I	CCWWGG	2 cut(s)	365, 386
ErhI	CCWWGG	2 cut(s)	365, 386
FaeI	CATG	3 cut(s)	116, 290, 338
FaiI	YATR	9 cut(s)	23, 114, 123, 125, 224, 288, 336, 638, 640
FalI	AAGNNNNNCTT	2 cut(s)	388, 420
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	3 cut(s)	112, 286, 334
Fnu4HI	GCNGC	1 cut(s)	439
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	439
FspBI	CTAG	2 cut(s)	387, 408
GluI	GCNGC	1 cut(s)	439
GsaI	CCCAGC	1 cut(s)	133
HaeIII	GGCC	2 cut(s)	31, 403
HapII	CCGG	2 cut(s)	253, 482
Hin1II	CATG	3 cut(s)	116, 290, 338
HinfI	GANTC	4 cut(s)	245, 359, 470, 521
HpaII	CCGG	2 cut(s)	253, 482
Hpy188I	TCNGA	7 cut(s)	61, 198, 241, 282, 379, 424, 603
Hpy188III	TCNNGA	3 cut(s)	312, 446, 614
HpyAV	CCTTC	4 cut(s)	309, 332, 393, 414
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	1 cut(s)	179
HpyF3I	CTNAG	3 cut(s)	33, 444, 600
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	3 cut(s)	116, 290, 338
Lsp1109I	GCAGC	1 cut(s)	450
LweI	GCATC	1 cut(s)	188
MaeI	CTAG	2 cut(s)	387, 408
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	44
MboII	GAAGA	3 cut(s)	254, 520, 635
MluCI	AATT	3 cut(s)	40, 296, 604
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	9 cut(s)	21, 28, 335, 405, 418, 428, 453, 484, 610
MroXI	GAANNNNTTC	1 cut(s)	403
MseI	TTAA	1 cut(s)	191
MspI	CCGG	2 cut(s)	253, 482
MspR9I	CCNGG	2 cut(s)	171, 558
MvaI	CCWGG	2 cut(s)	171, 558
NlaIII	CATG	3 cut(s)	116, 290, 338
NlaIV	GGNNCC	2 cut(s)	538, 562
NmuCI	GTSAC	1 cut(s)	44
NspI	RCATGY	1 cut(s)	116
PceI	AGGCCT	2 cut(s)	31, 403
PdmI	GAANNNNTTC	1 cut(s)	403
PfeI	GAWTC	4 cut(s)	245, 359, 470, 521
PkrI	GCNGC	1 cut(s)	440
Psp6I	CCWGG	2 cut(s)	169, 556
PspFI	CCCAGC	1 cut(s)	129
PspGI	CCWGG	2 cut(s)	169, 556
PspN4I	GGNNCC	2 cut(s)	538, 562
PspPI	GGNCC	2 cut(s)	137, 537
PsrI	GAACNNNNNNTAC	2 cut(s)	66, 98
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	1 cut(s)	439
Sau96I	GGNCC	2 cut(s)	137, 537
ScrFI	CCNGG	2 cut(s)	171, 558
SetI	ASST	5 cut(s)	108, 190, 346, 388, 597
SfaNI	GCATC	1 cut(s)	188
SfcI	CTRYAG	2 cut(s)	99, 570
SinI	GGWCC	2 cut(s)	137, 537
Sse9I	AATT	3 cut(s)	40, 296, 604
SseBI	AGGCCT	2 cut(s)	31, 403
SsiI	CCGC	1 cut(s)	505
SspMI	CTAG	2 cut(s)	387, 408
StuI	AGGCCT	2 cut(s)	31, 403
StyD4I	CCNGG	2 cut(s)	169, 556
StyI	CCWWGG	2 cut(s)	365, 386
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	311
TaqII	GACCGA	1 cut(s)	227
TasI	AATT	3 cut(s)	40, 296, 604
TfiI	GAWTC	4 cut(s)	245, 359, 470, 521
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	1 cut(s)	438
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	164, 351
VpaK11BI	GGWCC	2 cut(s)	137, 537
XapI	RAATTY	1 cut(s)	604
XceI	RCATGY	1 cut(s)	116
XmaJI	CCTAGG	1 cut(s)	386
XmnI	GAANNNNTTC	1 cut(s)	403
XspI	CTAG	2 cut(s)	387, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.