FvH4_2g21080

CRIB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007680
Physical Location & Seq
Reverse (-)
17572898 .. 17574751
1854 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g21080.t1

Sequence Viewer

Length: 681 bp
ATGTCGAATAAAGAAAATAGCAGTAAGATGAAGGGCCTCTTAAAAGGCTTGAGATACATCTCTCAAATATTTGATGATAACAAAGAGCAAGAAATTCAGATTGGATTTCCTACAGATGTAAAGCATGTGGCTCATATAGGCTGGGATGGTCCAGCAACTGCGACAAGTTCTCCTAGCTGGATGAATGAGTTTCAATCTCCACCAGGATTTGCATCAGCACCTTTATCTCAGAATGGAGAAATGAGAGAAGATAATCCGATCAAATGGGTTTCGGAAGATTCAAGCCGGAGAAGTTCAAGGAGTTCAATGTCTCCGGTACATGAGTCCCCGGAAGTGCCAAAGCAGTCAAGAAGGCAATCATCACGGGGGCATGAAGGAGGTGTGGACTCCCCAAAGAGCCCAAAGAGGGAAAAATCAGATAAACATAGGCAAACAAGAAGGCCTTCTAGGAGGGACTCGTCGGAGACTAGTAGAGCCAGCCATCAAGAAGCCACGGATACTAGTACCGAATCCTCCCTACCGGACATCCCCAAGAAATCACGGCGGAAGAAGTCGAAAGAATCCGCACCTGGGGGTTCAAAAAAAATAAAAGATCCTGAAACTCCACCTGCAACAAAGTGCAATAGCATTGAACCTCAAAATTCTTTTCAAGAGGGGGAAGACAATGGGTGTTTTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBD

Protein Analysis

227

Amino Acids

25.11

Weight (kDa)

9.3

Isoelectric Point (pI)

98.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 616
Acc36I ACCTGC 1 cut(s) 616
AciI CCGC 2 cut(s) 544, 564
AclWI GGATC 1 cut(s) 587
AcsI RAATTY 2 cut(s) 93, 640
AfaI GTAC 2 cut(s) 318, 505
AfiI CCNNNNNNNGG 2 cut(s) 406, 570
AgsI TTSAA 7 cut(s) 194, 282, 297, 306, 579, 632, 650
AhlI ACTAGT 2 cut(s) 467, 500
AjnI CCWGG 2 cut(s) 202, 568
AjuI GAANNNNNNNTTGG 2 cut(s) 84, 116
AluBI AGCT 1 cut(s) 177
AluI AGCT 1 cut(s) 177
Alw26I GTCTC 2 cut(s) 315, 458
AlwI GGATC 1 cut(s) 587
AlwNI CAGNNNCTG 1 cut(s) 158
AoxI GGCC 2 cut(s) 34, 440
ApoI RAATTY 2 cut(s) 93, 640
Asp700I GAANNNNTTC 1 cut(s) 442
AspS9I GGNCC 2 cut(s) 34, 149
AsuC2I CCSGG 1 cut(s) 329
AvaII GGWCC 1 cut(s) 149
BaeI ACNNNNGTAYC 2 cut(s) 308, 341
BanII GRGCYC 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 666
BccI CCATC 2 cut(s) 140, 489
BceAI ACGGC 1 cut(s) 557
BciT130I CCWGG 2 cut(s) 204, 570
BciVI GTATCC 1 cut(s) 490
BcnI CCSGG 1 cut(s) 329
BcoDI GTCTC 2 cut(s) 315, 458
BcuI ACTAGT 2 cut(s) 467, 500
BfaI CTAG 4 cut(s) 174, 447, 468, 501
BfmI CTRYAG 1 cut(s) 111
BfuAI ACCTGC 1 cut(s) 616
BfuI GTATCC 1 cut(s) 490
Bme1390I CCNGG 3 cut(s) 204, 329, 570
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 2 cut(s) 34, 149
BmrFI CCNGG 3 cut(s) 204, 329, 570
BmsI GCATC 1 cut(s) 221
BpiI GAAGAC 1 cut(s) 666
BpuEI CTTGAG 1 cut(s) 70
BpuMI CCSGG 1 cut(s) 329
BsaBI GATNNNNATC 1 cut(s) 211
BsaJI CCNNGG 3 cut(s) 327, 492, 569
BsaWI WCCGGW 2 cut(s) 313, 520
BsaXI ACNNNNNCTCC 2 cut(s) 154, 184
Bsc4I CCNNNNNNNGG 2 cut(s) 406, 570
Bse8I GATNNNNATC 1 cut(s) 211
BseBI CCWGG 2 cut(s) 204, 570
BseDI CCNNGG 3 cut(s) 327, 492, 569
BseGI GGATG 3 cut(s) 151, 186, 525
BseJI GATNNNNATC 1 cut(s) 211
BseLI CCNNNNNNNGG 2 cut(s) 406, 570
BseMII CTCAG 1 cut(s) 242
BseYI CCCAGC 1 cut(s) 141
BshFI GGCC 2 cut(s) 36, 442
BsiSI CCGG 4 cut(s) 286, 314, 329, 521
BslFI GGGAC 2 cut(s) 310, 467
BslI CCNNNNNNNGG 2 cut(s) 406, 570
BsmAI GTCTC 2 cut(s) 315, 458
BsmFI GGGAC 2 cut(s) 310, 467
BsnI GGCC 2 cut(s) 36, 442
Bsp1286I GDGCHC 1 cut(s) 401
Bsp143I GATC 2 cut(s) 258, 592
BspACI CCGC 2 cut(s) 544, 564
BspANI GGCC 2 cut(s) 36, 442
BspCNI CTCAG 1 cut(s) 241
BspMI ACCTGC 1 cut(s) 616
BspPI GGATC 1 cut(s) 587
BssECI CCNNGG 3 cut(s) 327, 492, 569
BssMI GATC 2 cut(s) 258, 592
Bst2UI CCWGG 2 cut(s) 204, 570
BstC8I GCNNGC 1 cut(s) 478
BstDEI CTNAG 1 cut(s) 228
BstDSI CCRYGG 1 cut(s) 492
BstF5I GGATG 3 cut(s) 151, 186, 525
BstKTI GATC 2 cut(s) 261, 595
BstMAI GTCTC 2 cut(s) 315, 458
BstMBI GATC 2 cut(s) 258, 592
BstNI CCWGG 2 cut(s) 204, 570
BstNSI RCATGY 1 cut(s) 128
BstSCI CCNGG 3 cut(s) 202, 327, 568
BstSFI CTRYAG 1 cut(s) 111
BstV2I GAAGAC 1 cut(s) 666
BstX2I RGATCY 1 cut(s) 592
BstYI RGATCY 1 cut(s) 592
BsuI GTATCC 1 cut(s) 490
BsuRI GGCC 2 cut(s) 36, 442
BtgI CCRYGG 1 cut(s) 492
BtsCI GGATG 3 cut(s) 151, 186, 525
BveI ACCTGC 1 cut(s) 616
Cac8I GCNNGC 1 cut(s) 478
CaiI CAGNNNCTG 1 cut(s) 158
Cfr13I GGNCC 2 cut(s) 34, 149
Csp6I GTAC 2 cut(s) 317, 504
CviAII CATG 3 cut(s) 125, 320, 371
CviQI GTAC 2 cut(s) 317, 504
DdeI CTNAG 1 cut(s) 228
DpnI GATC 2 cut(s) 260, 594
DpnII GATC 2 cut(s) 258, 592
EciI GGCGGA 1 cut(s) 559
Eco147I AGGCCT 1 cut(s) 442
Eco24I GRGCYC 1 cut(s) 401
Eco47I GGWCC 1 cut(s) 149
EcoO109I RGGNCCY 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 202, 568
EcoT38I GRGCYC 1 cut(s) 401
FaeI CATG 3 cut(s) 128, 323, 374
FaiI YATR 6 cut(s) 126, 135, 137, 321, 372, 426
FalI AAGNNNNNCTT 4 cut(s) 23, 55, 427, 459
FaqI GGGAC 2 cut(s) 310, 467
FatI CATG 3 cut(s) 124, 319, 370
FokI GGATG 3 cut(s) 158, 193, 512
FriOI GRGCYC 1 cut(s) 401
FspBI CTAG 4 cut(s) 174, 447, 468, 501
GsaI CCCAGC 1 cut(s) 145
HaeIII GGCC 2 cut(s) 36, 442
HapII CCGG 4 cut(s) 286, 314, 329, 521
Hin1II CATG 3 cut(s) 128, 323, 374
HinfI GANTC 6 cut(s) 278, 323, 386, 455, 509, 560
HpaII CCGG 4 cut(s) 286, 314, 329, 521
Hpy166II GTNNAC 1 cut(s) 385
Hpy188I TCNGA 6 cut(s) 99, 231, 258, 274, 418, 463
Hpy188III TCNNGA 4 cut(s) 348, 485, 596, 650
Hpy8I GTNNAC 1 cut(s) 385
Hpy99I CGWCG 1 cut(s) 463
HpyAV CCTTC 5 cut(s) 25, 345, 368, 432, 453
HpyCH4V TGCA 3 cut(s) 212, 611, 621
HpyF3I CTNAG 1 cut(s) 228
Hsp92II CATG 3 cut(s) 128, 323, 374
Kzo9I GATC 2 cut(s) 258, 592
LweI GCATC 1 cut(s) 221
MaeI CTAG 4 cut(s) 174, 447, 468, 501
MalI GATC 2 cut(s) 260, 594
MboI GATC 2 cut(s) 258, 592
MboII GAAGA 4 cut(s) 260, 287, 559, 671
MflI RGATCY 1 cut(s) 592
MhlI GDGCHC 1 cut(s) 401
MluCI AATT 2 cut(s) 93, 640
MlyI GAGTC 3 cut(s) 332, 380, 449
MmeI TCCRAC 1 cut(s) 441
MnlI CCTC 7 cut(s) 47, 371, 399, 444, 523, 645, 646
MroXI GAANNNNTTC 1 cut(s) 442
MseI TTAA 1 cut(s) 41
MspI CCGG 4 cut(s) 286, 314, 329, 521
MspR9I CCNGG 3 cut(s) 204, 329, 570
MvaI CCWGG 2 cut(s) 204, 570
NciI CCSGG 1 cut(s) 329
NdeII GATC 2 cut(s) 258, 592
NlaIII CATG 3 cut(s) 128, 323, 374
NspI RCATGY 1 cut(s) 128
PaqCI CACCTGC 1 cut(s) 616
PceI AGGCCT 1 cut(s) 442
PdmI GAANNNNTTC 1 cut(s) 442
PfeI GAWTC 3 cut(s) 278, 509, 560
PleI GAGTC 3 cut(s) 331, 380, 449
PpsI GAGTC 3 cut(s) 331, 380, 449
Psp6I CCWGG 2 cut(s) 202, 568
PspFI CCCAGC 1 cut(s) 141
PspGI CCWGG 2 cut(s) 202, 568
PspPI GGNCC 2 cut(s) 34, 149
PstNI CAGNNNCTG 1 cut(s) 158
PsuI RGATCY 1 cut(s) 592
RsaI GTAC 2 cut(s) 318, 505
RsaNI GTAC 2 cut(s) 317, 504
SaqAI TTAA 1 cut(s) 41
Sau3AI GATC 2 cut(s) 258, 592
Sau96I GGNCC 2 cut(s) 34, 149
SchI GAGTC 3 cut(s) 332, 380, 449
ScrFI CCNGG 3 cut(s) 204, 329, 570
SduI GDGCHC 1 cut(s) 401
SetI ASST 7 cut(s) 179, 223, 382, 571, 610, 637, 680
SfaNI GCATC 1 cut(s) 221
SfcI CTRYAG 1 cut(s) 111
SinI GGWCC 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
SpeI ACTAGT 2 cut(s) 467, 500
Sse9I AATT 2 cut(s) 93, 640
SseBI AGGCCT 1 cut(s) 442
SsiI CCGC 2 cut(s) 544, 564
SspI AATATT 1 cut(s) 69
SspMI CTAG 4 cut(s) 174, 447, 468, 501
StuI AGGCCT 1 cut(s) 442
StyD4I CCNGG 3 cut(s) 202, 327, 568
TaqI TCGA 2 cut(s) 5, 554
TasI AATT 2 cut(s) 93, 640
TfiI GAWTC 3 cut(s) 278, 509, 560
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TspDTI ATGAA 3 cut(s) 44, 197, 387
TspGWI ACGGA 1 cut(s) 509
VpaK11BI GGWCC 1 cut(s) 149
XapI RAATTY 2 cut(s) 93, 640
XceI RCATGY 1 cut(s) 128
XmnI GAANNNNTTC 1 cut(s) 442
XspI CTAG 4 cut(s) 174, 447, 468, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.