Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007680

Physical Location & Seq

Genomic Coordinates Forward (+)

48403822 .. 48408284

Gene Structure 4463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG303900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGATATTTATTTACACACACATATTGAGGCCTGAGGGAAATTGTCACACTCATTTGTCAGATGATGACAAAGAACAAGAAATACAGATTGGGTTTCCTACAGACGTAAAGCATGTGGCTCATATAGGCTGGGATGGTCCATCAACGGCAAGTAGTTCTCCAAGCTGGATGAATGAGTTTCAATCTCCACCAGGATTTGCATCAGCACCTTTAAGTCAGAATGGCGAGATGACCGACAATAATATGGTCAAATGTATCTCTGAAGATTCAAGCCGGAGAAGTTCAAAGAGTTCAATGTCTCCGACACATGACCCTGAATTGCCCAAGTCATCGAGAAGGCAATCATCACGGGGGCATGAAGGAGGTGGTGGTGGAACTGAATCCCCAAGGGAAAAATCAGATAAACCTAGGCAAACAAGAAGGCCTTCTAGGAGGGACTTATCGGAGGGTAATAGAGGCAGCCCTCAGGAAGCCACAGATACAAGTAGCGAATCCTCCCTACCGGATATCCCCAAGAAATCACGGCGGAAGAAATCAAAAGAATCGGCGATTGGGGGGTCCAAAAAAAAAAAAAATCCTGGCACCCCATCTACAGCAAAGTCCAATAGCATTGAGCTATCTCAGAATTCTTTTCAAGAGGGGGAAGACAAGGGGTTTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

220

Amino Acids

24.05

Weight (kDa)

8.83

Isoelectric Point (pI)

86.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20430 AT4G28556 AT4G28556
fragaria_vesca	FvH4_2g21080
malus_domestica	MD00G1200000.v1.1 MD05G1193500.v1.1 MD10G1180200.v1.1
prunus_persica	Prupe.8G220200_v2.0.a1 Prupe.8G220200_v2.0.a1
pyrus_communis	pycom05g18090 pycom10g15610
rosa_chinensis	RchiOBHm_Chr6g0287541
rosa_laevigata	RLG00000012486
rosa_roxburghii	Rroxscaffold_7G00180940 Rroxscaffold_7G00181390
rosa_rugosa	Rorug06G0188800 Rorug06G0188900 Rorug06G0188900
rosa_samantha	Rh6AG300100 Rh6BG305600 Rh6CG303900 Rh6CG313900 Rh6DG297300
rosa_wichuraiana	Rw6G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	581
AciI	CCGC	1 cut(s)	526
AcsI	RAATTY	1 cut(s)	625
AcuI	CTGAAG	1 cut(s)	282
AgsI	TTSAA	5 cut(s)	182, 270, 285, 294, 635
AjnI	CCWGG	2 cut(s)	190, 577
AjuI	GAANNNNNNNTTGG	4 cut(s)	72, 104, 534, 566
AluBI	AGCT	2 cut(s)	165, 616
AluI	AGCT	2 cut(s)	165, 616
Alw26I	GTCTC	1 cut(s)	303
AoxI	GGCC	2 cut(s)	29, 422
ApeKI	GCWGC	1 cut(s)	459
ApoI	RAATTY	1 cut(s)	625
Asp700I	GAANNNNTTC	1 cut(s)	424
AspA2I	CCTAGG	1 cut(s)	407
AspS9I	GGNCC	2 cut(s)	137, 558
AvaII	GGWCC	2 cut(s)	137, 558
AvrII	CCTAGG	1 cut(s)	407
AxyI	CCTNAGG	2 cut(s)	33, 465
BanI	GGYRCC	1 cut(s)	581
BbsI	GAAGAC	1 cut(s)	651
BbvI	GCAGC	1 cut(s)	471
BccI	CCATC	3 cut(s)	128, 148, 595
BceAI	ACGGC	2 cut(s)	162, 539
BciT130I	CCWGG	2 cut(s)	192, 579
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	2 cut(s)	408, 429
BfmI	CTRYAG	2 cut(s)	99, 591
BisI	GCNGC	1 cut(s)	460
BlnI	CCTAGG	1 cut(s)	407
BlsI	GCNGC	1 cut(s)	461
Bme1390I	CCNGG	2 cut(s)	192, 579
Bme18I	GGWCC	2 cut(s)	137, 558
BmgT120I	GGNCC	2 cut(s)	137, 558
BmiI	GGNNCC	2 cut(s)	559, 583
BmrFI	CCNGG	2 cut(s)	192, 579
BmsI	GCATC	1 cut(s)	209
BpiI	GAAGAC	1 cut(s)	651
BsaBI	GATNNNNATC	1 cut(s)	199
BsaJI	CCNNGG	2 cut(s)	386, 407
BsaWI	WCCGGW	1 cut(s)	502
Bse21I	CCTNAGG	2 cut(s)	33, 465
Bse8I	GATNNNNATC	1 cut(s)	199
BseBI	CCWGG	2 cut(s)	192, 579
BseDI	CCNNGG	2 cut(s)	386, 407
BseGI	GGATG	2 cut(s)	139, 174
BseJI	GATNNNNATC	1 cut(s)	199
BseMII	CTCAG	3 cut(s)	24, 479, 635
BseXI	GCAGC	1 cut(s)	471
BseYI	CCCAGC	1 cut(s)	129
BshFI	GGCC	2 cut(s)	31, 424
BshNI	GGYRCC	1 cut(s)	581
BsiSI	CCGG	2 cut(s)	274, 503
BslFI	GGGAC	1 cut(s)	449
BsmAI	GTCTC	1 cut(s)	303
BsmFI	GGGAC	1 cut(s)	449
BsnI	GGCC	2 cut(s)	31, 424
BspACI	CCGC	1 cut(s)	526
BspANI	GGCC	2 cut(s)	31, 424
BspCNI	CTCAG	3 cut(s)	25, 478, 634
BspLI	GGNNCC	2 cut(s)	559, 583
BspT107I	GGYRCC	1 cut(s)	581
BssECI	CCNNGG	2 cut(s)	386, 407
BssT1I	CCWWGG	2 cut(s)	386, 407
Bst2UI	CCWGG	2 cut(s)	192, 579
BstDEI	CTNAG	3 cut(s)	33, 465, 621
BstF5I	GGATG	2 cut(s)	139, 174
BstMAI	GTCTC	1 cut(s)	303
BstNI	CCWGG	2 cut(s)	192, 579
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	2 cut(s)	190, 577
BstSFI	CTRYAG	2 cut(s)	99, 591
BstV1I	GCAGC	1 cut(s)	471
BstV2I	GAAGAC	1 cut(s)	651
Bsu36I	CCTNAGG	2 cut(s)	33, 465
BsuRI	GGCC	2 cut(s)	31, 424
BtsCI	GGATG	2 cut(s)	139, 174
Cfr13I	GGNCC	2 cut(s)	137, 558
CviAII	CATG	3 cut(s)	113, 308, 356
CviJI	RGCY	9 cut(s)	31, 119, 129, 165, 273, 424, 462, 473, 616
CviKI_1	RGCY	9 cut(s)	31, 119, 129, 165, 273, 424, 462, 473, 616
DdeI	CTNAG	3 cut(s)	33, 465, 621
EciI	GGCGGA	1 cut(s)	541
Eco130I	CCWWGG	2 cut(s)	386, 407
Eco147I	AGGCCT	2 cut(s)	31, 424
Eco32I	GATATC	1 cut(s)	508
Eco47I	GGWCC	2 cut(s)	137, 558
Eco57I	CTGAAG	1 cut(s)	282
Eco81I	CCTNAGG	2 cut(s)	33, 465
EcoRI	GAATTC	1 cut(s)	625
EcoRII	CCWGG	2 cut(s)	190, 577
EcoRV	GATATC	1 cut(s)	508
EcoT14I	CCWWGG	2 cut(s)	386, 407
ErhI	CCWWGG	2 cut(s)	386, 407
FaeI	CATG	3 cut(s)	116, 311, 359
FaiI	YATR	9 cut(s)	23, 114, 123, 125, 245, 309, 357, 659, 661
FalI	AAGNNNNNCTT	2 cut(s)	409, 441
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	3 cut(s)	112, 307, 355
Fnu4HI	GCNGC	1 cut(s)	460
FokI	GGATG	2 cut(s)	146, 181
Fsp4HI	GCNGC	1 cut(s)	460
FspBI	CTAG	2 cut(s)	408, 429
GluI	GCNGC	1 cut(s)	460
GsaI	CCCAGC	1 cut(s)	133
HaeIII	GGCC	2 cut(s)	31, 424
HapII	CCGG	2 cut(s)	274, 503
Hin1II	CATG	3 cut(s)	116, 311, 359
HinfI	GANTC	4 cut(s)	266, 380, 491, 542
HpaII	CCGG	2 cut(s)	274, 503
Hpy188I	TCNGA	7 cut(s)	61, 219, 262, 303, 400, 445, 624
Hpy188III	TCNNGA	3 cut(s)	333, 467, 635
HpyAV	CCTTC	4 cut(s)	330, 353, 414, 435
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	1 cut(s)	200
HpyF3I	CTNAG	3 cut(s)	33, 465, 621
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	3 cut(s)	116, 311, 359
Lsp1109I	GCAGC	1 cut(s)	471
LweI	GCATC	1 cut(s)	209
MaeI	CTAG	2 cut(s)	408, 429
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	44
MboII	GAAGA	3 cut(s)	275, 541, 656
MluCI	AATT	3 cut(s)	40, 317, 625
MmeI	TCCRAC	1 cut(s)	326
MnlI	CCTC	9 cut(s)	21, 28, 356, 426, 439, 449, 474, 505, 631
MroXI	GAANNNNTTC	1 cut(s)	424
MseI	TTAA	1 cut(s)	212
MspI	CCGG	2 cut(s)	274, 503
MspR9I	CCNGG	2 cut(s)	192, 579
MvaI	CCWGG	2 cut(s)	192, 579
NlaIII	CATG	3 cut(s)	116, 311, 359
NlaIV	GGNNCC	2 cut(s)	559, 583
NmuCI	GTSAC	1 cut(s)	44
NspI	RCATGY	1 cut(s)	116
PceI	AGGCCT	2 cut(s)	31, 424
PdmI	GAANNNNTTC	1 cut(s)	424
PfeI	GAWTC	4 cut(s)	266, 380, 491, 542
PkrI	GCNGC	1 cut(s)	461
Psp6I	CCWGG	2 cut(s)	190, 577
PspFI	CCCAGC	1 cut(s)	129
PspGI	CCWGG	2 cut(s)	190, 577
PspN4I	GGNNCC	2 cut(s)	559, 583
PspPI	GGNCC	2 cut(s)	137, 558
PsrI	GAACNNNNNNTAC	2 cut(s)	66, 98
SaqAI	TTAA	1 cut(s)	212
SatI	GCNGC	1 cut(s)	460
Sau96I	GGNCC	2 cut(s)	137, 558
ScrFI	CCNGG	2 cut(s)	192, 579
SetI	ASST	6 cut(s)	108, 167, 211, 367, 409, 618
SfaNI	GCATC	1 cut(s)	209
SfcI	CTRYAG	2 cut(s)	99, 591
SinI	GGWCC	2 cut(s)	137, 558
Sse9I	AATT	3 cut(s)	40, 317, 625
SseBI	AGGCCT	2 cut(s)	31, 424
SsiI	CCGC	1 cut(s)	526
SspMI	CTAG	2 cut(s)	408, 429
StuI	AGGCCT	2 cut(s)	31, 424
StyD4I	CCNGG	2 cut(s)	190, 577
StyI	CCWWGG	2 cut(s)	386, 407
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	332
TaqII	GACCGA	1 cut(s)	248
TasI	AATT	3 cut(s)	40, 317, 625
TfiI	GAWTC	4 cut(s)	266, 380, 491, 542
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	1 cut(s)	459
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	185, 372
VpaK11BI	GGWCC	2 cut(s)	137, 558
XapI	RAATTY	1 cut(s)	625
XceI	RCATGY	1 cut(s)	116
XmaJI	CCTAGG	1 cut(s)	407
XmnI	GAANNNNTTC	1 cut(s)	424
XspI	CTAG	2 cut(s)	408, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.