Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007680

Physical Location & Seq

Genomic Coordinates Reverse (-)

18858183 .. 18859216

Gene Structure 1034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g15610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCGGCCAAAGATGCAAATAATGGCAAGATGGTGGTGAAAGATGCAAATAATAACAAGATGAAGGGCCTCTTGAAGGGACTAAGATACATTTCTCAAATATTTGGTACGTATAAAATTGGAAGAAGGTTGCAATTAGATGGAGACTGGGAGCCGCTAGACGAGATCATCATGTGTTTTTTTTTCATGCAGATGAATGAGTTTCAAGCTCCACCCGGATTTGAACAATCACCACCTTTAGCCAATGGAGAGACGAAAGAAGATTCTAGGGTCAAATGGGTCTCTGAAGATTCGAGCCGGAAAGGTTCAAGGGGTGCAAGGTCACCAGGGCATGACGTGCCGGATTTACCCAAGTCGTCAAGGCGGCATTCAGCAAACGGGCACGGAGGTGGTGGACCGGATTCTCCCAGGAGGGGAAAATCAGATAAACCGAAGCAAACAAGGCGGTTTTCGAAGAATAGGGACACATCGGATAGTAGTACTAGAGGTATCCGGCAATCCACGGATCCAAGTCAAGGCAGCGAATCGCCGCAAAACCTACCGGACATCCCTAAGAAAACACAGCGGAAGAAGTCGAAGGACTCATCCGTTGGGGGGACATCAGGGTCAAGAAGATCTAAACACCATGCTAGTTCAGAAGCATGTACTTCTCCTGGACACCAATCTGCAACCATTTCTCAGAATTCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

231

Amino Acids

25.22

Weight (kDa)

10.04

Isoelectric Point (pI)

72.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20430 AT4G28556 AT4G28556
fragaria_vesca	FvH4_2g21080
malus_domestica	MD00G1200000.v1.1 MD05G1193500.v1.1 MD10G1180200.v1.1
prunus_persica	Prupe.8G220200_v2.0.a1 Prupe.8G220200_v2.0.a1
pyrus_communis	pycom05g18090 pycom10g15610
rosa_chinensis	RchiOBHm_Chr6g0287541
rosa_laevigata	RLG00000012486
rosa_roxburghii	Rroxscaffold_7G00180940 Rroxscaffold_7G00181390
rosa_rugosa	Rorug06G0188800 Rorug06G0188900 Rorug06G0188900
rosa_samantha	Rh6AG300100 Rh6BG305600 Rh6CG303900 Rh6CG313900 Rh6DG297300
rosa_wichuraiana	Rw6G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	604
AciI	CCGC	6 cut(s)	5, 155, 364, 445, 530, 565
AclWI	GGATC	2 cut(s)	500, 513
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	682
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	3 cut(s)	109, 481, 646
AfiI	CCNNNNNNNGG	4 cut(s)	76, 413, 515, 594
AgsI	TTSAA	4 cut(s)	76, 206, 224, 309
AjiI	CACGTC	1 cut(s)	337
AjnI	CCWGG	3 cut(s)	325, 407, 652
AleI	CACNNNNGTG	1 cut(s)	387
AluBI	AGCT	1 cut(s)	209
AluI	AGCT	1 cut(s)	209
Alw26I	GTCTC	3 cut(s)	138, 245, 286
AlwI	GGATC	2 cut(s)	500, 513
AoxI	GGCC	2 cut(s)	6, 67
ApeKI	GCWGC	1 cut(s)	519
ApoI	RAATTY	1 cut(s)	682
AspS9I	GGNCC	2 cut(s)	67, 395
AsuC2I	CCSGG	1 cut(s)	216
AsuHPI	GGTGA	3 cut(s)	49, 222, 315
AsuII	TTCGAA	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	395
BaeGI	GKGCMC	1 cut(s)	384
BamHI	GGATCC	1 cut(s)	505
BbvI	GCAGC	1 cut(s)	531
BccI	CCATC	2 cut(s)	25, 134
BciT130I	CCWGG	3 cut(s)	327, 409, 654
BciVI	GTATCC	1 cut(s)	500
BcnI	CCSGG	1 cut(s)	216
BcoDI	GTCTC	3 cut(s)	138, 245, 286
BfaI	CTAG	4 cut(s)	158, 267, 483, 630
BfuI	GTATCC	1 cut(s)	500
BglII	AGATCT	1 cut(s)	614
BisI	GCNGC	5 cut(s)	6, 155, 365, 520, 530
BlsI	GCNGC	5 cut(s)	7, 156, 366, 521, 531
BmcAI	AGTACT	1 cut(s)	481
Bme1390I	CCNGG	4 cut(s)	216, 327, 409, 654
Bme18I	GGWCC	1 cut(s)	395
BmgBI	CACGTC	1 cut(s)	337
BmgT120I	GGNCC	2 cut(s)	67, 395
BmiI	GGNNCC	2 cut(s)	153, 507
BmrFI	CCNGG	4 cut(s)	216, 327, 409, 654
BmrI	ACTGGG	1 cut(s)	157
BmsI	GCATC	2 cut(s)	4, 34
BmuI	ACTGGG	1 cut(s)	157
Bpu14I	TTCGAA	1 cut(s)	452
BpuMI	CCSGG	1 cut(s)	216
BsaAI	YACGTR	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	286
BsaJI	CCNNGG	3 cut(s)	326, 407, 501
BsaWI	WCCGGW	2 cut(s)	397, 541
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 413, 515, 594
Bse1I	ACTGG	1 cut(s)	152
BseBI	CCWGG	3 cut(s)	327, 409, 654
BseDI	CCNNGG	3 cut(s)	326, 407, 501
BseGI	GGATG	2 cut(s)	546, 584
BseLI	CCNNNNNNNGG	4 cut(s)	76, 413, 515, 594
BseMII	CTCAG	1 cut(s)	692
BseNI	ACTGG	1 cut(s)	152
BseSI	GKGCMC	1 cut(s)	384
BseXI	GCAGC	1 cut(s)	531
BshFI	GGCC	2 cut(s)	8, 69
BsiSI	CCGG	6 cut(s)	216, 298, 341, 398, 493, 542
BslFI	GGGAC	3 cut(s)	93, 476, 610
BslI	CCNNNNNNNGG	4 cut(s)	76, 413, 515, 594
BsmAI	GTCTC	3 cut(s)	138, 245, 286
BsmBI	CGTCTC	1 cut(s)	245
BsmFI	GGGAC	3 cut(s)	93, 476, 610
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	2 cut(s)	8, 69
Bso31I	GGTCTC	1 cut(s)	286
Bsp119I	TTCGAA	1 cut(s)	452
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	3 cut(s)	165, 505, 614
BspACI	CCGC	6 cut(s)	5, 155, 364, 445, 530, 565
BspANI	GGCC	2 cut(s)	8, 69
BspCNI	CTCAG	1 cut(s)	691
BspLI	GGNNCC	2 cut(s)	153, 507
BspPI	GGATC	2 cut(s)	500, 513
BspT104I	TTCGAA	1 cut(s)	452
BspTNI	GGTCTC	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	3 cut(s)	326, 407, 501
BssMI	GATC	3 cut(s)	165, 505, 614
Bst2UI	CCWGG	3 cut(s)	327, 409, 654
BstAPI	GCANNNNNTGC	1 cut(s)	337
BstBAI	YACGTR	1 cut(s)	111
BstBI	TTCGAA	1 cut(s)	452
BstDEI	CTNAG	3 cut(s)	83, 552, 678
BstDSI	CCRYGG	1 cut(s)	501
BstEII	GGTNACC	1 cut(s)	321
BstENI	CCTNNNNNAGG	1 cut(s)	74
BstF5I	GGATG	2 cut(s)	546, 584
BstKTI	GATC	3 cut(s)	168, 508, 617
BstMAI	GTCTC	3 cut(s)	138, 245, 286
BstMBI	GATC	3 cut(s)	165, 505, 614
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 337, 442
BstNI	CCWGG	3 cut(s)	327, 409, 654
BstNSI	RCATGY	1 cut(s)	645
BstPI	GGTNACC	1 cut(s)	321
BstSCI	CCNGG	4 cut(s)	214, 325, 407, 652
BstSLI	GKGCMC	1 cut(s)	384
BstSNI	TACGTA	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	531
BstX2I	RGATCY	2 cut(s)	505, 614
BstYI	RGATCY	2 cut(s)	505, 614
BsuI	GTATCC	1 cut(s)	500
BsuRI	GGCC	2 cut(s)	8, 69
BtgI	CCRYGG	1 cut(s)	501
BtrI	CACGTC	1 cut(s)	337
BtsCI	GGATG	2 cut(s)	546, 584
Cfr13I	GGNCC	2 cut(s)	67, 395
Csp6I	GTAC	3 cut(s)	108, 480, 645
CviAII	CATG	5 cut(s)	172, 187, 332, 626, 642
CviJI	RGCY	6 cut(s)	8, 69, 154, 209, 242, 297
CviKI_1	RGCY	6 cut(s)	8, 69, 154, 209, 242, 297
CviQI	GTAC	3 cut(s)	108, 480, 645
DdeI	CTNAG	3 cut(s)	83, 552, 678
DpnI	GATC	3 cut(s)	167, 507, 616
DpnII	GATC	3 cut(s)	165, 505, 614
DrdI	GACNNNNNNGTC	1 cut(s)	604
DseDI	GACNNNNNNGTC	1 cut(s)	604
EaeI	YGGCCR	1 cut(s)	6
Eco105I	TACGTA	1 cut(s)	111
Eco31I	GGTCTC	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	306
Eco91I	GGTNACC	1 cut(s)	321
EcoNI	CCTNNNNNAGG	1 cut(s)	74
EcoO109I	RGGNCCY	1 cut(s)	67
EcoO65I	GGTNACC	1 cut(s)	321
EcoRI	GAATTC	1 cut(s)	682
EcoRII	CCWGG	3 cut(s)	325, 407, 652
Esp3I	CGTCTC	1 cut(s)	245
FaeI	CATG	5 cut(s)	175, 190, 335, 629, 645
FaiI	YATR	6 cut(s)	114, 173, 188, 333, 627, 643
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FaqI	GGGAC	3 cut(s)	93, 476, 610
FatI	CATG	5 cut(s)	171, 186, 331, 625, 641
Fnu4HI	GCNGC	5 cut(s)	6, 155, 365, 520, 530
FokI	GGATG	2 cut(s)	533, 571
Fsp4HI	GCNGC	5 cut(s)	6, 155, 365, 520, 530
FspBI	CTAG	4 cut(s)	158, 267, 483, 630
GluI	GCNGC	5 cut(s)	6, 155, 365, 520, 530
HaeIII	GGCC	2 cut(s)	8, 69
HapII	CCGG	6 cut(s)	216, 298, 341, 398, 493, 542
Hin1II	CATG	5 cut(s)	175, 190, 335, 629, 645
HinfI	GANTC	5 cut(s)	263, 290, 401, 524, 581
HpaII	CCGG	6 cut(s)	216, 298, 341, 398, 493, 542
HphI	GGTGA	3 cut(s)	49, 222, 315
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	5 cut(s)	286, 424, 472, 637, 681
Hpy188III	TCNNGA	2 cut(s)	73, 609
Hpy8I	GTNNAC	1 cut(s)	395
HpyAV	CCTTC	4 cut(s)	58, 70, 120, 571
HpyCH4IV	ACGT	2 cut(s)	110, 336
HpyCH4V	TGCA	6 cut(s)	17, 47, 133, 190, 317, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 337, 442
HpyF3I	CTNAG	3 cut(s)	83, 552, 678
HpySE526I	ACGT	2 cut(s)	110, 336
Hsp92II	CATG	5 cut(s)	175, 190, 335, 629, 645
Kzo9I	GATC	3 cut(s)	165, 505, 614
LmnI	GCTCC	2 cut(s)	151, 214
Lsp1109I	GCAGC	1 cut(s)	531
LweI	GCATC	2 cut(s)	4, 34
MaeI	CTAG	4 cut(s)	158, 267, 483, 630
MaeII	ACGT	2 cut(s)	110, 336
MaeIII	GTNAC	1 cut(s)	321
MalI	GATC	3 cut(s)	167, 507, 616
MboI	GATC	3 cut(s)	165, 505, 614
MboII	GAAGA	6 cut(s)	135, 272, 299, 466, 580, 624
MflI	RGATCY	2 cut(s)	505, 614
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	3 cut(s)	117, 134, 682
MlyI	GAGTC	1 cut(s)	575
MnlI	CCTC	4 cut(s)	80, 380, 405, 479
MseI	TTAA	1 cut(s)	691
MslI	CAYNNNNRTG	2 cut(s)	191, 387
MspA1I	CMGCKG	1 cut(s)	565
MspI	CCGG	6 cut(s)	216, 298, 341, 398, 493, 542
MspR9I	CCNGG	4 cut(s)	216, 327, 409, 654
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	3 cut(s)	327, 409, 654
MwoI	GCNNNNNNNGC	3 cut(s)	14, 337, 442
NciI	CCSGG	1 cut(s)	216
NdeII	GATC	3 cut(s)	165, 505, 614
NlaIII	CATG	5 cut(s)	175, 190, 335, 629, 645
NlaIV	GGNNCC	2 cut(s)	153, 507
NmuCI	GTSAC	1 cut(s)	321
NspI	RCATGY	1 cut(s)	645
NspV	TTCGAA	1 cut(s)	452
OliI	CACNNNNGTG	1 cut(s)	387
PctI	GAATGC	1 cut(s)	367
PfeI	GAWTC	4 cut(s)	263, 290, 401, 524
PfoI	TCCNGGA	1 cut(s)	652
PkrI	GCNGC	5 cut(s)	7, 156, 366, 521, 531
PleI	GAGTC	1 cut(s)	575
PpsI	GAGTC	1 cut(s)	575
Ppu21I	YACGTR	1 cut(s)	111
Psp6I	CCWGG	3 cut(s)	325, 407, 652
PspEI	GGTNACC	1 cut(s)	321
PspGI	CCWGG	3 cut(s)	325, 407, 652
PspN4I	GGNNCC	2 cut(s)	153, 507
PspPI	GGNCC	2 cut(s)	67, 395
PsuI	RGATCY	2 cut(s)	505, 614
RsaI	GTAC	3 cut(s)	109, 481, 646
RsaNI	GTAC	3 cut(s)	108, 480, 645
RseI	CAYNNNNRTG	2 cut(s)	191, 387
SaqAI	TTAA	1 cut(s)	691
SatI	GCNGC	5 cut(s)	6, 155, 365, 520, 530
Sau3AI	GATC	3 cut(s)	165, 505, 614
Sau96I	GGNCC	2 cut(s)	67, 395
ScaI	AGTACT	1 cut(s)	481
SchI	GAGTC	1 cut(s)	575
ScrFI	CCNGG	4 cut(s)	216, 327, 409, 654
SduI	GDGCHC	1 cut(s)	384
SfaNI	GCATC	2 cut(s)	4, 34
SfuI	TTCGAA	1 cut(s)	452
SinI	GGWCC	1 cut(s)	395
SmiMI	CAYNNNNRTG	2 cut(s)	191, 387
SnaBI	TACGTA	1 cut(s)	111
Sse9I	AATT	3 cut(s)	117, 134, 682
SsiI	CCGC	6 cut(s)	5, 155, 364, 445, 530, 565
SspI	AATATT	1 cut(s)	102
SspMI	CTAG	4 cut(s)	158, 267, 483, 630
StyD4I	CCNGG	4 cut(s)	214, 325, 407, 652
TaiI	ACGT	2 cut(s)	113, 339
TaqI	TCGA	3 cut(s)	293, 452, 575
TasI	AATT	3 cut(s)	117, 134, 682
TatI	WGTACW	2 cut(s)	479, 644
TauI	GCSGC	4 cut(s)	8, 157, 367, 532
TfiI	GAWTC	4 cut(s)	263, 290, 401, 524
Tru1I	TTAA	1 cut(s)	691
Tru9I	TTAA	1 cut(s)	691
TseFI	GTSAC	1 cut(s)	321
TseI	GCWGC	1 cut(s)	519
Tsp45I	GTSAC	1 cut(s)	321
TspDTI	ATGAA	3 cut(s)	77, 175, 209
TspGWI	ACGGA	3 cut(s)	399, 518, 577
VpaK11BI	GGWCC	1 cut(s)	395
XagI	CCTNNNNNAGG	1 cut(s)	74
XapI	RAATTY	1 cut(s)	682
XceI	RCATGY	1 cut(s)	645
XspI	CTAG	4 cut(s)	158, 267, 483, 630
ZrmI	AGTACT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.