RchiOBHm_Chr6g0287541

CRIB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0007680
Physical Location & Seq
Reverse (-)
50938421 .. 50939480
1060 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25795

Sequence Viewer

Length: 717 bp
ATGTCGAATAAAGAAAATAGCAGTAAGATGAAGGGCCTCTTAAAAGGCCTGAGATACATTTCTCAAATGTTTGATGATGACAAAGAACAAGAAATACAGATTGGGTTTCCTACAGACGTAAAGCATGTGGCTCATATAGGCTGGGATGGTCCATCAACGGCAAGTAGTTCTCCAAGCTGGATGAATGAGTTTCAATCTCCACCAGGATTTGCATCAGCACCTTTAAGTCAGAATGGCGAGATGACCGACAATAATATGGTCAAATGTATCTCTGAAGATTCAAGCCGGAGAAGTTCAAAGAGTTCAATGTCTCCGACACATGACCCTGAATTGCCCAAGTCATCGAGAAGGCAATCATCACGGGGGCATGAAGGAGGTGGTGGTGGAACTGAATCCCCAAGGGAAAAATCAGATAAACCTAGGCAAACAAGAAGGCCTTCTAGGAGGGACTTATCGGAGGGTAATAGAGGCAGCCCTCAGGAAGCCACAGATACAAGTAGCGAATCCTCCCTACCGGATATCCCCAAGAAATCACGGCGGAAGAAATCAAAAGAATCGGCGATTGGGGGGTCCAAAAAAAAAAAAATCCTGGCACCCCATCTACAGCAAAGTCCAATAGCATTGAGCTATCTCAGAATTCTTTTCAAGAGGGGGAAGACAAGGGGTTTATATGAAGTTATTCAAAGAATTGATTACTATCAATGTTGTAGCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBD

Protein Analysis

238

Amino Acids

26.42

Weight (kDa)

9.73

Isoelectric Point (pI)

86.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 592
AciI CCGC 1 cut(s) 538
AcsI RAATTY 1 cut(s) 636
AcuI CTGAAG 1 cut(s) 294
AgsI TTSAA 6 cut(s) 194, 282, 297, 306, 646, 683
AjnI CCWGG 2 cut(s) 202, 588
AjuI GAANNNNNNNTTGG 4 cut(s) 84, 116, 546, 578
AluBI AGCT 3 cut(s) 177, 627, 714
AluI AGCT 3 cut(s) 177, 627, 714
Alw26I GTCTC 1 cut(s) 315
AoxI GGCC 3 cut(s) 34, 46, 434
ApeKI GCWGC 2 cut(s) 471, 711
ApoI RAATTY 1 cut(s) 636
Asp700I GAANNNNTTC 2 cut(s) 436, 678
AspA2I CCTAGG 1 cut(s) 419
AspS9I GGNCC 3 cut(s) 34, 149, 570
AvaII GGWCC 2 cut(s) 149, 570
AvrII CCTAGG 1 cut(s) 419
AxyI CCTNAGG 1 cut(s) 477
BanI GGYRCC 1 cut(s) 592
BbsI GAAGAC 1 cut(s) 662
BbvI GCAGC 1 cut(s) 483
BccI CCATC 3 cut(s) 140, 160, 606
BceAI ACGGC 2 cut(s) 174, 551
BciT130I CCWGG 2 cut(s) 204, 590
BcoDI GTCTC 1 cut(s) 315
BfaI CTAG 3 cut(s) 420, 441, 715
BfmI CTRYAG 2 cut(s) 111, 602
BisI GCNGC 2 cut(s) 472, 712
BlnI CCTAGG 1 cut(s) 419
BlsI GCNGC 2 cut(s) 473, 713
Bme1390I CCNGG 2 cut(s) 204, 590
Bme18I GGWCC 2 cut(s) 149, 570
BmgT120I GGNCC 3 cut(s) 34, 149, 570
BmiI GGNNCC 2 cut(s) 571, 594
BmrFI CCNGG 2 cut(s) 204, 590
BmsI GCATC 1 cut(s) 221
BpiI GAAGAC 1 cut(s) 662
BsaBI GATNNNNATC 2 cut(s) 211, 696
BsaJI CCNNGG 2 cut(s) 398, 419
BsaWI WCCGGW 1 cut(s) 514
Bse21I CCTNAGG 1 cut(s) 477
Bse8I GATNNNNATC 2 cut(s) 211, 696
BseBI CCWGG 2 cut(s) 204, 590
BseDI CCNNGG 2 cut(s) 398, 419
BseGI GGATG 2 cut(s) 151, 186
BseJI GATNNNNATC 2 cut(s) 211, 696
BseMII CTCAG 3 cut(s) 41, 491, 646
BseXI GCAGC 1 cut(s) 483
BseYI CCCAGC 1 cut(s) 141
BshFI GGCC 3 cut(s) 36, 48, 436
BshNI GGYRCC 1 cut(s) 592
BsiSI CCGG 2 cut(s) 286, 515
BslFI GGGAC 1 cut(s) 461
BsmAI GTCTC 1 cut(s) 315
BsmFI GGGAC 1 cut(s) 461
BsnI GGCC 3 cut(s) 36, 48, 436
BspACI CCGC 1 cut(s) 538
BspANI GGCC 3 cut(s) 36, 48, 436
BspCNI CTCAG 3 cut(s) 42, 490, 645
BspLI GGNNCC 2 cut(s) 571, 594
BspT107I GGYRCC 1 cut(s) 592
BssECI CCNNGG 2 cut(s) 398, 419
BssT1I CCWWGG 2 cut(s) 398, 419
Bst2UI CCWGG 2 cut(s) 204, 590
BstDEI CTNAG 3 cut(s) 50, 477, 632
BstF5I GGATG 2 cut(s) 151, 186
BstMAI GTCTC 1 cut(s) 315
BstNI CCWGG 2 cut(s) 204, 590
BstNSI RCATGY 1 cut(s) 128
BstSCI CCNGG 2 cut(s) 202, 588
BstSFI CTRYAG 2 cut(s) 111, 602
BstV1I GCAGC 1 cut(s) 483
BstV2I GAAGAC 1 cut(s) 662
Bsu36I CCTNAGG 1 cut(s) 477
BsuRI GGCC 3 cut(s) 36, 48, 436
BtsCI GGATG 2 cut(s) 151, 186
Cfr13I GGNCC 3 cut(s) 34, 149, 570
CviAII CATG 3 cut(s) 125, 320, 368
DdeI CTNAG 3 cut(s) 50, 477, 632
EciI GGCGGA 1 cut(s) 553
Eco130I CCWWGG 2 cut(s) 398, 419
Eco147I AGGCCT 2 cut(s) 48, 436
Eco32I GATATC 1 cut(s) 520
Eco47I GGWCC 2 cut(s) 149, 570
Eco57I CTGAAG 1 cut(s) 294
Eco81I CCTNAGG 1 cut(s) 477
EcoO109I RGGNCCY 1 cut(s) 34
EcoRI GAATTC 1 cut(s) 636
EcoRII CCWGG 2 cut(s) 202, 588
EcoRV GATATC 1 cut(s) 520
EcoT14I CCWWGG 2 cut(s) 398, 419
ErhI CCWWGG 2 cut(s) 398, 419
FaeI CATG 3 cut(s) 128, 323, 371
FaiI YATR 8 cut(s) 126, 135, 137, 257, 321, 369, 670, 672
FalI AAGNNNNNCTT 4 cut(s) 23, 55, 421, 453
FaqI GGGAC 1 cut(s) 461
FatI CATG 3 cut(s) 124, 319, 367
Fnu4HI GCNGC 2 cut(s) 472, 712
FokI GGATG 2 cut(s) 158, 193
Fsp4HI GCNGC 2 cut(s) 472, 712
FspBI CTAG 3 cut(s) 420, 441, 715
GluI GCNGC 2 cut(s) 472, 712
GsaI CCCAGC 1 cut(s) 145
HaeIII GGCC 3 cut(s) 36, 48, 436
HapII CCGG 2 cut(s) 286, 515
Hin1II CATG 3 cut(s) 128, 323, 371
HinfI GANTC 4 cut(s) 278, 392, 503, 554
HpaII CCGG 2 cut(s) 286, 515
Hpy188I TCNGA 6 cut(s) 231, 274, 315, 412, 457, 635
Hpy188III TCNNGA 3 cut(s) 345, 479, 646
HpyAV CCTTC 5 cut(s) 25, 342, 365, 426, 447
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 1 cut(s) 212
HpyF3I CTNAG 3 cut(s) 50, 477, 632
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 3 cut(s) 128, 323, 371
Lsp1109I GCAGC 1 cut(s) 483
LweI GCATC 1 cut(s) 221
MaeI CTAG 3 cut(s) 420, 441, 715
MaeII ACGT 1 cut(s) 117
MboII GAAGA 3 cut(s) 287, 553, 667
MluCI AATT 3 cut(s) 329, 636, 687
MmeI TCCRAC 1 cut(s) 338
MnlI CCTC 8 cut(s) 47, 368, 438, 451, 461, 486, 517, 642
MroXI GAANNNNTTC 2 cut(s) 436, 678
MseI TTAA 2 cut(s) 41, 224
MspI CCGG 2 cut(s) 286, 515
MspR9I CCNGG 2 cut(s) 204, 590
MvaI CCWGG 2 cut(s) 204, 590
NlaIII CATG 3 cut(s) 128, 323, 371
NlaIV GGNNCC 2 cut(s) 571, 594
NspI RCATGY 1 cut(s) 128
PceI AGGCCT 2 cut(s) 48, 436
PdmI GAANNNNTTC 2 cut(s) 436, 678
PfeI GAWTC 4 cut(s) 278, 392, 503, 554
PkrI GCNGC 2 cut(s) 473, 713
Psp6I CCWGG 2 cut(s) 202, 588
PspFI CCCAGC 1 cut(s) 141
PspGI CCWGG 2 cut(s) 202, 588
PspN4I GGNNCC 2 cut(s) 571, 594
PspPI GGNCC 3 cut(s) 34, 149, 570
PsrI GAACNNNNNNTAC 2 cut(s) 78, 110
SaqAI TTAA 2 cut(s) 41, 224
SatI GCNGC 2 cut(s) 472, 712
Sau96I GGNCC 3 cut(s) 34, 149, 570
ScrFI CCNGG 2 cut(s) 204, 590
SetI ASST 7 cut(s) 120, 179, 223, 379, 421, 629, 716
SfaNI GCATC 1 cut(s) 221
SfcI CTRYAG 2 cut(s) 111, 602
SinI GGWCC 2 cut(s) 149, 570
Sse9I AATT 3 cut(s) 329, 636, 687
SseBI AGGCCT 2 cut(s) 48, 436
SsiI CCGC 1 cut(s) 538
SspMI CTAG 3 cut(s) 420, 441, 715
StuI AGGCCT 2 cut(s) 48, 436
StyD4I CCNGG 2 cut(s) 202, 588
StyI CCWWGG 2 cut(s) 398, 419
TaiI ACGT 1 cut(s) 120
TaqI TCGA 2 cut(s) 5, 344
TaqII GACCGA 1 cut(s) 260
TasI AATT 3 cut(s) 329, 636, 687
TfiI GAWTC 4 cut(s) 278, 392, 503, 554
Tru1I TTAA 2 cut(s) 41, 224
Tru9I TTAA 2 cut(s) 41, 224
TseI GCWGC 2 cut(s) 471, 711
TspDTI ATGAA 4 cut(s) 44, 197, 384, 687
VpaK11BI GGWCC 2 cut(s) 149, 570
XapI RAATTY 1 cut(s) 636
XceI RCATGY 1 cut(s) 128
XmaJI CCTAGG 1 cut(s) 419
XmnI GAANNNNTTC 2 cut(s) 436, 678
XspI CTAG 3 cut(s) 420, 441, 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.