Rh6BG305600

CRIB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0007680
Physical Location & Seq
Reverse (-)
53524891 .. 53527085
2195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG305600.1

Sequence Viewer

Length: 663 bp
ATGATATTTATTTACACACACATATTGAGGCCTGAGGGAAATTGTCACACTCATTTGTCAGATGATGACAAAGAACAAGAAATTCAGATTGGGTTTCCTACAGACGTAAAGCATGTGGCTCATATAGGCTGGGATGGTCCATCAACGGCAAGTAGTTCTCCAAGCTGGATGAATGAGTTTCAATCTCCACCAGGATTTGCATCAGCACCTTTAAGTCAGAATGGAGAGATGACCGACAATAATATGGTCAAATGCATCTCTGAAGATTCAAGCCGGAGAAGTTCAAGGAGTTCTATGTCTCCGACACATGACCCTGAATTGCCCAAGTCATCGAGAAGGCAATCATCACGGGGGCATGGAGGAGGTGGCGGTGGAACTGAATCCCCAAGGGAAAAATCAGATAAACCTAGGCAAACAAGAAGGCCTTCTAGGAGGGACTTATCGGAGGGTAATAGAGGCAGCCGTCAGGAAGCCACAGATACAAGTAGCGAATCCTCCCTACCGGATATCCCCAAGAAATCACGGCGGAAGAAATCAAAAGAATCGGCGATTGGGGGGTCCAAAAAAACAAAAGATCCTGGCACCCCATCTACAGCAAAGTCCAATAGCATTGAGCTATCTCAGAATTCTTTTCAAGAGGGGGAAGACAAAGGGTTTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBD

Protein Analysis

220

Amino Acids

24.03

Weight (kDa)

8.87

Isoelectric Point (pI)

88.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBD PF00786 29 - 62 9.3e-06 P21-Rho-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 581
AciI CCGC 2 cut(s) 369, 526
AclWI GGATC 1 cut(s) 569
AcsI RAATTY 2 cut(s) 81, 625
AcuI CTGAAG 1 cut(s) 282
AgsI TTSAA 4 cut(s) 182, 270, 285, 635
AjnI CCWGG 2 cut(s) 190, 577
AjuI GAANNNNNNNTTGG 4 cut(s) 72, 104, 534, 566
AluBI AGCT 2 cut(s) 165, 616
AluI AGCT 2 cut(s) 165, 616
Alw26I GTCTC 1 cut(s) 303
AlwI GGATC 1 cut(s) 569
AoxI GGCC 2 cut(s) 29, 422
ApeKI GCWGC 1 cut(s) 459
ApoI RAATTY 2 cut(s) 81, 625
Asp700I GAANNNNTTC 1 cut(s) 424
AspA2I CCTAGG 1 cut(s) 407
AspS9I GGNCC 2 cut(s) 137, 558
AvaII GGWCC 2 cut(s) 137, 558
AvrII CCTAGG 1 cut(s) 407
AxyI CCTNAGG 1 cut(s) 33
BanI GGYRCC 1 cut(s) 581
BbsI GAAGAC 1 cut(s) 651
BbvI GCAGC 1 cut(s) 471
BccI CCATC 3 cut(s) 128, 148, 595
BceAI ACGGC 3 cut(s) 162, 447, 539
BciT130I CCWGG 2 cut(s) 192, 579
BcoDI GTCTC 1 cut(s) 303
BfaI CTAG 2 cut(s) 408, 429
BfmI CTRYAG 2 cut(s) 99, 591
BisI GCNGC 1 cut(s) 460
BlnI CCTAGG 1 cut(s) 407
BlsI GCNGC 1 cut(s) 461
Bme1390I CCNGG 2 cut(s) 192, 579
Bme18I GGWCC 2 cut(s) 137, 558
BmgT120I GGNCC 2 cut(s) 137, 558
BmiI GGNNCC 2 cut(s) 559, 583
BmrFI CCNGG 2 cut(s) 192, 579
BmsI GCATC 2 cut(s) 209, 264
BpiI GAAGAC 1 cut(s) 651
BsaBI GATNNNNATC 1 cut(s) 199
BsaJI CCNNGG 2 cut(s) 386, 407
BsaWI WCCGGW 1 cut(s) 502
Bse21I CCTNAGG 1 cut(s) 33
Bse8I GATNNNNATC 1 cut(s) 199
BseBI CCWGG 2 cut(s) 192, 579
BseDI CCNNGG 2 cut(s) 386, 407
BseGI GGATG 2 cut(s) 139, 174
BseJI GATNNNNATC 1 cut(s) 199
BseMII CTCAG 2 cut(s) 24, 635
BseRI GAGGAG 1 cut(s) 375
BseXI GCAGC 1 cut(s) 471
BseYI CCCAGC 1 cut(s) 129
BshFI GGCC 2 cut(s) 31, 424
BshNI GGYRCC 1 cut(s) 581
BsiSI CCGG 2 cut(s) 274, 503
BslFI GGGAC 1 cut(s) 449
BsmAI GTCTC 1 cut(s) 303
BsmFI GGGAC 1 cut(s) 449
BsnI GGCC 2 cut(s) 31, 424
Bsp143I GATC 1 cut(s) 574
BspACI CCGC 2 cut(s) 369, 526
BspANI GGCC 2 cut(s) 31, 424
BspCNI CTCAG 2 cut(s) 25, 634
BspLI GGNNCC 2 cut(s) 559, 583
BspPI GGATC 1 cut(s) 569
BspT107I GGYRCC 1 cut(s) 581
BssECI CCNNGG 2 cut(s) 386, 407
BssMI GATC 1 cut(s) 574
BssT1I CCWWGG 2 cut(s) 386, 407
Bst2UI CCWGG 2 cut(s) 192, 579
BstDEI CTNAG 2 cut(s) 33, 621
BstF5I GGATG 2 cut(s) 139, 174
BstKTI GATC 1 cut(s) 577
BstMAI GTCTC 1 cut(s) 303
BstMBI GATC 1 cut(s) 574
BstNI CCWGG 2 cut(s) 192, 579
BstNSI RCATGY 1 cut(s) 116
BstSCI CCNGG 2 cut(s) 190, 577
BstSFI CTRYAG 2 cut(s) 99, 591
BstV1I GCAGC 1 cut(s) 471
BstV2I GAAGAC 1 cut(s) 651
BstX2I RGATCY 1 cut(s) 574
BstYI RGATCY 1 cut(s) 574
Bsu36I CCTNAGG 1 cut(s) 33
BsuRI GGCC 2 cut(s) 31, 424
BtsCI GGATG 2 cut(s) 139, 174
Cfr13I GGNCC 2 cut(s) 137, 558
CviAII CATG 4 cut(s) 113, 308, 356, 660
CviJI RGCY 9 cut(s) 31, 119, 129, 165, 273, 424, 462, 473, 616
CviKI_1 RGCY 9 cut(s) 31, 119, 129, 165, 273, 424, 462, 473, 616
DdeI CTNAG 2 cut(s) 33, 621
DpnI GATC 1 cut(s) 576
DpnII GATC 1 cut(s) 574
EciI GGCGGA 1 cut(s) 541
Eco130I CCWWGG 2 cut(s) 386, 407
Eco147I AGGCCT 2 cut(s) 31, 424
Eco32I GATATC 1 cut(s) 508
Eco47I GGWCC 2 cut(s) 137, 558
Eco57I CTGAAG 1 cut(s) 282
Eco81I CCTNAGG 1 cut(s) 33
EcoRI GAATTC 1 cut(s) 625
EcoRII CCWGG 2 cut(s) 190, 577
EcoRV GATATC 1 cut(s) 508
EcoT14I CCWWGG 2 cut(s) 386, 407
EcoT22I ATGCAT 1 cut(s) 257
ErhI CCWWGG 2 cut(s) 386, 407
FaeI CATG 4 cut(s) 116, 311, 359, 663
FaiI YATR 9 cut(s) 23, 114, 123, 125, 245, 296, 309, 357, 661
FalI AAGNNNNNCTT 2 cut(s) 409, 441
FaqI GGGAC 1 cut(s) 449
FatI CATG 4 cut(s) 112, 307, 355, 659
Fnu4HI GCNGC 1 cut(s) 460
FokI GGATG 2 cut(s) 146, 181
Fsp4HI GCNGC 1 cut(s) 460
FspBI CTAG 2 cut(s) 408, 429
GluI GCNGC 1 cut(s) 460
GsaI CCCAGC 1 cut(s) 133
HaeIII GGCC 2 cut(s) 31, 424
HapII CCGG 2 cut(s) 274, 503
Hin1II CATG 4 cut(s) 116, 311, 359, 663
HinfI GANTC 4 cut(s) 266, 380, 491, 542
HpaII CCGG 2 cut(s) 274, 503
Hpy166II GTNNAC 1 cut(s) 657
Hpy188I TCNGA 8 cut(s) 61, 87, 219, 262, 303, 400, 445, 624
Hpy188III TCNNGA 3 cut(s) 333, 467, 635
Hpy8I GTNNAC 1 cut(s) 657
HpyAV CCTTC 3 cut(s) 330, 414, 435
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 2 cut(s) 200, 255
HpyF3I CTNAG 2 cut(s) 33, 621
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 4 cut(s) 116, 311, 359, 663
Kzo9I GATC 1 cut(s) 574
Lsp1109I GCAGC 1 cut(s) 471
LweI GCATC 2 cut(s) 209, 264
MaeI CTAG 2 cut(s) 408, 429
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 44
MalI GATC 1 cut(s) 576
MboI GATC 1 cut(s) 574
MboII GAAGA 3 cut(s) 275, 541, 656
MflI RGATCY 1 cut(s) 574
MluCI AATT 4 cut(s) 40, 81, 317, 625
MmeI TCCRAC 1 cut(s) 326
MnlI CCTC 9 cut(s) 21, 28, 353, 356, 426, 439, 449, 505, 631
Mph1103I ATGCAT 1 cut(s) 257
MroXI GAANNNNTTC 1 cut(s) 424
MseI TTAA 1 cut(s) 212
MspI CCGG 2 cut(s) 274, 503
MspR9I CCNGG 2 cut(s) 192, 579
MvaI CCWGG 2 cut(s) 192, 579
NdeII GATC 1 cut(s) 574
NlaIII CATG 4 cut(s) 116, 311, 359, 663
NlaIV GGNNCC 2 cut(s) 559, 583
NmuCI GTSAC 1 cut(s) 44
NsiI ATGCAT 1 cut(s) 257
NspI RCATGY 1 cut(s) 116
PceI AGGCCT 2 cut(s) 31, 424
PdmI GAANNNNTTC 1 cut(s) 424
PfeI GAWTC 4 cut(s) 266, 380, 491, 542
PkrI GCNGC 1 cut(s) 461
Psp6I CCWGG 2 cut(s) 190, 577
PspFI CCCAGC 1 cut(s) 129
PspGI CCWGG 2 cut(s) 190, 577
PspN4I GGNNCC 2 cut(s) 559, 583
PspPI GGNCC 2 cut(s) 137, 558
PsuI RGATCY 1 cut(s) 574
SaqAI TTAA 1 cut(s) 212
SatI GCNGC 1 cut(s) 460
Sau3AI GATC 1 cut(s) 574
Sau96I GGNCC 2 cut(s) 137, 558
ScrFI CCNGG 2 cut(s) 192, 579
SetI ASST 6 cut(s) 108, 167, 211, 367, 409, 618
SfaNI GCATC 2 cut(s) 209, 264
SfcI CTRYAG 2 cut(s) 99, 591
SinI GGWCC 2 cut(s) 137, 558
Sse9I AATT 4 cut(s) 40, 81, 317, 625
SseBI AGGCCT 2 cut(s) 31, 424
SsiI CCGC 2 cut(s) 369, 526
SspMI CTAG 2 cut(s) 408, 429
StuI AGGCCT 2 cut(s) 31, 424
StyD4I CCNGG 2 cut(s) 190, 577
StyI CCWWGG 2 cut(s) 386, 407
TaiI ACGT 1 cut(s) 108
TaqI TCGA 1 cut(s) 332
TaqII GACCGA 1 cut(s) 248
TasI AATT 4 cut(s) 40, 81, 317, 625
TfiI GAWTC 4 cut(s) 266, 380, 491, 542
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 1 cut(s) 459
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 1 cut(s) 185
VpaK11BI GGWCC 2 cut(s) 137, 558
XapI RAATTY 2 cut(s) 81, 625
XceI RCATGY 1 cut(s) 116
XmaJI CCTAGG 1 cut(s) 407
XmnI GAANNNNTTC 1 cut(s) 424
XspI CTAG 2 cut(s) 408, 429
Zsp2I ATGCAT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.