Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0007680

Physical Location & Seq

Genomic Coordinates Reverse (-)

32144108 .. 32145053

Gene Structure 946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1193500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCAATCCTTTCGGCAGATGATAACAAAGACCAAGAAATGCAGATTGGGCTTCCTACAGATGTAAAGCATGTTGCTCATATAGGATGGGATGGCCCTTCAACTGCTAGTTCTCCAAGCTGGATGAATGAGTTTCAAGCTCCACCAGGATTTCAACAGTCAGCACCTTTAGGCAATGGAGATATGAAAGAAGATTATGGGGTCAAATGGATTTCAAGCCAGAAAAGTTCAAGGGGTGCTAGGTCACCGGCGAATGACATGCCGGATTTACCCAAGTCGTCAAGGCGGCATTCATCGAACGGGCACGGAGGTGGTGGAACGGATTCCCCCAAGAAGGAAAAATCAGATAAAGTTAAGCATACAAGGAGGTCTTCTAAGAATAGGGAGATATCGGACAGTAGTACTAGGAGCATCCAGCAATCCACGGATCCAAGTCAAGGCAGCAAGTCGCCGCAAAACCTACCGGACATCCCTAAGAAAACGCGACGGAAGAAGTCGAAGGACTCGTCCATTGGGAGTCCATCAGGGTCAAGGAGATCTAAACACCATGCTAGTTCAGAAACATGTACATCTCCTGGACACCAATCTGCAACCATTTCTCAGAGATCTTTTCAAGAGGGGGAGGACAAGGGATTTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

214

Amino Acids

23.04

Weight (kDa)

9.71

Isoelectric Point (pI)

87.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20430 AT4G28556 AT4G28556
fragaria_vesca	FvH4_2g21080
malus_domestica	MD00G1200000.v1.1 MD05G1193500.v1.1 MD10G1180200.v1.1
prunus_persica	Prupe.8G220200_v2.0.a1 Prupe.8G220200_v2.0.a1
pyrus_communis	pycom05g18090 pycom10g15610
rosa_chinensis	RchiOBHm_Chr6g0287541
rosa_laevigata	RLG00000012486
rosa_roxburghii	Rroxscaffold_7G00180940 Rroxscaffold_7G00181390
rosa_rugosa	Rorug06G0188800 Rorug06G0188900 Rorug06G0188900
rosa_samantha	Rh6AG300100 Rh6BG305600 Rh6CG303900 Rh6CG313900 Rh6DG297300
rosa_wichuraiana	Rw6G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	484
AciI	CCGC	2 cut(s)	286, 452
AclWI	GGATC	2 cut(s)	422, 435
AfaI	GTAC	2 cut(s)	403, 568
AfiI	CCNNNNNNNGG	2 cut(s)	334, 437
AflIII	ACRYGT	1 cut(s)	563
AgsI	TTSAA	6 cut(s)	102, 137, 155, 216, 231, 614
AjnI	CCWGG	2 cut(s)	145, 574
AjuI	GAANNNNNNNTTGG	2 cut(s)	30, 62
AleI	CACNNNNGTG	1 cut(s)	309
AluBI	AGCT	2 cut(s)	120, 140
AluI	AGCT	2 cut(s)	120, 140
AlwI	GGATC	2 cut(s)	422, 435
AoxI	GGCC	1 cut(s)	94
ApeKI	GCWGC	1 cut(s)	441
ArsI	GACNNNNNNTTYG	2 cut(s)	491, 523
Asp700I	GAANNNNTTC	1 cut(s)	322
AspS9I	GGNCC	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	237
BaeGI	GKGCMC	1 cut(s)	306
BamHI	GGATCC	1 cut(s)	427
BbsI	GAAGAC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	453
BccI	CCATC	3 cut(s)	81, 86, 529
BcgI	CGANNNNNNTGC	3 cut(s)	28, 241, 275
BciT130I	CCWGG	2 cut(s)	147, 576
BfaI	CTAG	4 cut(s)	108, 240, 405, 552
BfmI	CTRYAG	1 cut(s)	57
BglII	AGATCT	2 cut(s)	536, 605
BisI	GCNGC	3 cut(s)	287, 442, 452
BlsI	GCNGC	3 cut(s)	288, 443, 453
BmcAI	AGTACT	1 cut(s)	403
Bme1390I	CCNGG	2 cut(s)	147, 576
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	2 cut(s)	147, 576
BmsI	GCATC	1 cut(s)	420
BpiI	GAAGAC	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	423
BsaWI	WCCGGW	1 cut(s)	463
Bsc4I	CCNNNNNNNGG	2 cut(s)	334, 437
Bse118I	RCCGGY	1 cut(s)	247
Bse3DI	GCAATG	1 cut(s)	181
BseBI	CCWGG	2 cut(s)	147, 576
BseDI	CCNNGG	1 cut(s)	423
BseGI	GGATG	5 cut(s)	92, 97, 129, 411, 468
BseLI	CCNNNNNNNGG	2 cut(s)	334, 437
BseMI	GCAATG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	614
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	453
Bsh1236I	CGCG	1 cut(s)	484
BshFI	GGCC	1 cut(s)	96
BsiSI	CCGG	3 cut(s)	248, 263, 464
BslI	CCNNNNNNNGG	2 cut(s)	334, 437
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp1407I	TGTACA	1 cut(s)	566
Bsp143I	GATC	3 cut(s)	427, 536, 605
BspACI	CCGC	2 cut(s)	286, 452
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	1 cut(s)	613
BspFNI	CGCG	1 cut(s)	484
BspLI	GGNNCC	1 cut(s)	429
BspPI	GGATC	2 cut(s)	422, 435
BsrDI	GCAATG	1 cut(s)	181
BsrFI	RCCGGY	1 cut(s)	247
BsrGI	TGTACA	1 cut(s)	566
BssAI	RCCGGY	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	423
BssMI	GATC	3 cut(s)	427, 536, 605
Bst2UI	CCWGG	2 cut(s)	147, 576
Bst4CI	ACNGT	2 cut(s)	159, 398
BstAUI	TGTACA	1 cut(s)	566
BstDEI	CTNAG	3 cut(s)	375, 474, 600
BstDSI	CCRYGG	1 cut(s)	423
BstEII	GGTNACC	1 cut(s)	243
BstF5I	GGATG	5 cut(s)	92, 97, 129, 411, 468
BstFNI	CGCG	1 cut(s)	484
BstKTI	GATC	3 cut(s)	430, 539, 608
BstMBI	GATC	3 cut(s)	427, 536, 605
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstNI	CCWGG	2 cut(s)	147, 576
BstNSI	RCATGY	3 cut(s)	74, 262, 567
BstPI	GGTNACC	1 cut(s)	243
BstSCI	CCNGG	2 cut(s)	145, 574
BstSFI	CTRYAG	1 cut(s)	57
BstSLI	GKGCMC	1 cut(s)	306
BstUI	CGCG	1 cut(s)	484
BstV1I	GCAGC	1 cut(s)	453
BstV2I	GAAGAC	1 cut(s)	363
BstX2I	RGATCY	3 cut(s)	427, 536, 605
BstYI	RGATCY	3 cut(s)	427, 536, 605
BsuRI	GGCC	1 cut(s)	96
BtgI	CCRYGG	1 cut(s)	423
BtsCI	GGATG	5 cut(s)	92, 97, 129, 411, 468
Cfr10I	RCCGGY	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	402, 567
CviAII	CATG	5 cut(s)	71, 259, 548, 564, 639
CviJI	RGCY	5 cut(s)	52, 96, 120, 140, 219
CviKI_1	RGCY	5 cut(s)	52, 96, 120, 140, 219
CviQI	GTAC	2 cut(s)	402, 567
DdeI	CTNAG	3 cut(s)	375, 474, 600
DpnI	GATC	3 cut(s)	429, 538, 607
DpnII	GATC	3 cut(s)	427, 536, 605
Eco32I	GATATC	1 cut(s)	390
Eco91I	GGTNACC	1 cut(s)	243
EcoO65I	GGTNACC	1 cut(s)	243
EcoRII	CCWGG	2 cut(s)	145, 574
EcoRV	GATATC	1 cut(s)	390
FaeI	CATG	5 cut(s)	74, 262, 551, 567, 642
FalI	AAGNNNNNCTT	2 cut(s)	355, 387
FatI	CATG	5 cut(s)	70, 258, 547, 563, 638
Fnu4HI	GCNGC	3 cut(s)	287, 442, 452
FokI	GGATG	5 cut(s)	99, 104, 136, 398, 455
Fsp4HI	GCNGC	3 cut(s)	287, 442, 452
FspBI	CTAG	4 cut(s)	108, 240, 405, 552
GluI	GCNGC	3 cut(s)	287, 442, 452
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	3 cut(s)	248, 263, 464
Hin1II	CATG	5 cut(s)	74, 262, 551, 567, 642
HinfI	GANTC	3 cut(s)	323, 503, 517
HpaII	CCGG	3 cut(s)	248, 263, 464
HphI	GGTGA	1 cut(s)	237
Hpy188I	TCNGA	4 cut(s)	346, 394, 559, 603
Hpy188III	TCNNGA	1 cut(s)	614
Hpy99I	CGWCG	1 cut(s)	489
HpyAV	CCTTC	3 cut(s)	108, 328, 493
HpyCH4III	ACNGT	2 cut(s)	159, 398
HpyCH4V	TGCA	2 cut(s)	43, 590
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
HpyF3I	CTNAG	3 cut(s)	375, 474, 600
Hsp92II	CATG	5 cut(s)	74, 262, 551, 567, 642
Kzo9I	GATC	3 cut(s)	427, 536, 605
LmnI	GCTCC	2 cut(s)	145, 408
Lsp1109I	GCAGC	1 cut(s)	453
LweI	GCATC	1 cut(s)	420
MaeI	CTAG	4 cut(s)	108, 240, 405, 552
MaeIII	GTNAC	1 cut(s)	243
MalI	GATC	3 cut(s)	429, 538, 607
MboI	GATC	3 cut(s)	427, 536, 605
MboII	GAAGA	3 cut(s)	203, 363, 502
MflI	RGATCY	3 cut(s)	427, 536, 605
MhlI	GDGCHC	1 cut(s)	306
MlyI	GAGTC	2 cut(s)	497, 526
MnlI	CCTC	4 cut(s)	302, 360, 610, 616
MroXI	GAANNNNTTC	1 cut(s)	322
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	1 cut(s)	309
MspI	CCGG	3 cut(s)	248, 263, 464
MspR9I	CCNGG	2 cut(s)	147, 576
Mva1269I	GAATGC	1 cut(s)	289
MvaI	CCWGG	2 cut(s)	147, 576
MvnI	CGCG	1 cut(s)	484
MwoI	GCNNNNNNNGC	1 cut(s)	49
NdeII	GATC	3 cut(s)	427, 536, 605
NlaIII	CATG	5 cut(s)	74, 262, 551, 567, 642
NlaIV	GGNNCC	1 cut(s)	429
NmuCI	GTSAC	1 cut(s)	243
NspI	RCATGY	3 cut(s)	74, 262, 567
OliI	CACNNNNGTG	1 cut(s)	309
PciI	ACATGT	1 cut(s)	563
PcsI	WCGNNNNNNNCGW	1 cut(s)	503
PctI	GAATGC	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	323
PfoI	TCCNGGA	1 cut(s)	574
PkrI	GCNGC	3 cut(s)	288, 443, 453
PleI	GAGTC	2 cut(s)	497, 525
PpsI	GAGTC	2 cut(s)	497, 525
PscI	ACATGT	1 cut(s)	563
Psp6I	CCWGG	2 cut(s)	145, 574
PspEI	GGTNACC	1 cut(s)	243
PspGI	CCWGG	2 cut(s)	145, 574
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	1 cut(s)	95
PsuI	RGATCY	3 cut(s)	427, 536, 605
RsaI	GTAC	2 cut(s)	403, 568
RsaNI	GTAC	2 cut(s)	402, 567
RseI	CAYNNNNRTG	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	3 cut(s)	287, 442, 452
Sau3AI	GATC	3 cut(s)	427, 536, 605
Sau96I	GGNCC	1 cut(s)	95
ScaI	AGTACT	1 cut(s)	403
SchI	GAGTC	2 cut(s)	497, 526
ScrFI	CCNGG	2 cut(s)	147, 576
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	7 cut(s)	122, 142, 169, 245, 313, 371, 462
SfaNI	GCATC	1 cut(s)	420
SfcI	CTRYAG	1 cut(s)	57
SgrAI	CRCCGGYG	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	309
SsiI	CCGC	2 cut(s)	286, 452
SspMI	CTAG	4 cut(s)	108, 240, 405, 552
StyD4I	CCNGG	2 cut(s)	145, 574
TaaI	ACNGT	2 cut(s)	159, 398
TaqI	TCGA	2 cut(s)	296, 497
TatI	WGTACW	2 cut(s)	401, 566
TauI	GCSGC	2 cut(s)	289, 454
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TseFI	GTSAC	1 cut(s)	243
TseI	GCWGC	1 cut(s)	441
Tsp45I	GTSAC	1 cut(s)	243
TspDTI	ATGAA	3 cut(s)	140, 200, 282
TspGWI	ACGGA	4 cut(s)	321, 335, 440, 502
XceI	RCATGY	3 cut(s)	74, 262, 567
XmnI	GAANNNNTTC	1 cut(s)	322
XspI	CTAG	4 cut(s)	108, 240, 405, 552
ZrmI	AGTACT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.