Prupe.8G220200_v2.0.a1

CRIB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0007680
Physical Location & Seq
Reverse (-)
20015467 .. 20017225
1759 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G220200.1

Sequence Viewer

Length: 729 bp
ATGGCAAACACTGCAAATAACACAAAGATGAAGGGCCTCTTGAAAGGCCTAAGATACATTTCTCAAATTTTTGATGATAACAAAGGCCAAGAAATGCAGATTGGGTTTCCTACAGATGTAAAGCATGTGGCTCATATAGGATGGGAGGGTCCATCAACTGCTGCTGGTTCTCCAAGCTGGATGAATGAGTTTCAAGCTCCACCTGGATATTCATCAGGACCTTTAAGCAATGGAGAGACAAAAGAGGATCCTGGGGTCAAATGGGTCTCTCAAGATTCAAGCCGGAAGGGTAGTTCAAGGGGTGCTAGGTCTCCGGCACATGACACGCCGGATTTGCCAAGGGCGTCGCCACAGCAAACATCAAGTGGGCATGGAGATGGTGGAATCGACTCCCCTAAGAGGGAAAGATCAGATAAACCGAAGCAAACAAGGCGGTCTTCTAAGAATAGGGACACAACAGATAGTATTACTAGAGGTATCCGGCAATCCATGGAGTCAATTCATGGCAGTGAATCGCCGCAAAACCCGCCAGACATCCCTAAGAAAACGCGGCGAAAGAAATCCAAAGATTCCTCTGTTGGGGGGGCATCAAGAAAGGCTAAACCCCATGCTAGTTCAGAAACATGCACAGATCCTGGACACCAACCTGCAACTACTTATAAATGTAATAGCAAAGACCATCTATCTCAGAATTCTTTTCAAGAGGGGGAAGACAAGGGATTTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBD

Protein Analysis

243

Amino Acids

26.22

Weight (kDa)

9.54

Isoelectric Point (pI)

62.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 660
Acc36I ACCTGC 1 cut(s) 655
AccII CGCG 1 cut(s) 550
AciI CCGC 4 cut(s) 433, 518, 527, 550
AclWI GGATC 3 cut(s) 242, 255, 626
AcsI RAATTY 2 cut(s) 66, 691
AcyI GRCGYC 1 cut(s) 344
AfiI CCNNNNNNNGG 3 cut(s) 399, 400, 579
AgsI TTSAA 5 cut(s) 43, 194, 279, 297, 701
AjnI CCWGG 3 cut(s) 202, 250, 634
AjuI GAANNNNNNNTTGG 2 cut(s) 84, 116
AloI GAACNNNNNNTCC 2 cut(s) 277, 309
AluBI AGCT 2 cut(s) 177, 197
AluI AGCT 2 cut(s) 177, 197
Alw26I GTCTC 3 cut(s) 230, 271, 315
AlwI GGATC 3 cut(s) 242, 255, 626
AlwNI CAGNNNCTG 1 cut(s) 635
AoxI GGCC 3 cut(s) 34, 46, 85
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 2 cut(s) 66, 691
AspS9I GGNCC 3 cut(s) 34, 149, 218
AvaII GGWCC 2 cut(s) 149, 218
BamHI GGATCC 1 cut(s) 247
BbsI GAAGAC 2 cut(s) 429, 717
BbvI GCAGC 1 cut(s) 148
BccI CCATC 4 cut(s) 135, 160, 371, 687
BciT130I CCWGG 3 cut(s) 204, 252, 636
BciVI GTATCC 1 cut(s) 488
BcoDI GTCTC 3 cut(s) 230, 271, 315
BfaI CTAG 3 cut(s) 306, 471, 612
BfmI CTRYAG 1 cut(s) 111
BfuAI ACCTGC 1 cut(s) 655
BfuI GTATCC 1 cut(s) 488
BisI GCNGC 3 cut(s) 162, 518, 551
BlsI GCNGC 3 cut(s) 163, 519, 552
Bme1390I CCNGG 3 cut(s) 204, 252, 636
Bme18I GGWCC 2 cut(s) 149, 218
BmgT120I GGNCC 3 cut(s) 34, 149, 218
BmiI GGNNCC 2 cut(s) 150, 249
BmrFI CCNGG 3 cut(s) 204, 252, 636
BmsI GCATC 1 cut(s) 596
BpiI GAAGAC 2 cut(s) 429, 717
BpuEI CTTGAG 1 cut(s) 255
BsaBI GATNNNNATC 1 cut(s) 211
BsaHI GRCGYC 1 cut(s) 344
BsaI GGTCTC 2 cut(s) 271, 315
BsaJI CCNNGG 3 cut(s) 251, 338, 489
Bsc4I CCNNNNNNNGG 3 cut(s) 399, 400, 579
Bse3DI GCAATG 1 cut(s) 235
Bse8I GATNNNNATC 1 cut(s) 211
BseBI CCWGG 3 cut(s) 204, 252, 636
BseDI CCNNGG 3 cut(s) 251, 338, 489
BseGI GGATG 3 cut(s) 146, 186, 534
BseJI GATNNNNATC 1 cut(s) 211
BseLI CCNNNNNNNGG 3 cut(s) 399, 400, 579
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 701
BseXI GCAGC 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 550
BshFI GGCC 3 cut(s) 36, 48, 87
BsiSI CCGG 4 cut(s) 283, 314, 329, 481
BslFI GGGAC 1 cut(s) 464
BslI CCNNNNNNNGG 3 cut(s) 399, 400, 579
BsmAI GTCTC 3 cut(s) 230, 271, 315
BsmFI GGGAC 1 cut(s) 464
BsnI GGCC 3 cut(s) 36, 48, 87
Bso31I GGTCTC 2 cut(s) 271, 315
Bsp143I GATC 3 cut(s) 247, 407, 631
Bsp19I CCATGG 1 cut(s) 489
BspACI CCGC 4 cut(s) 433, 518, 527, 550
BspANI GGCC 3 cut(s) 36, 48, 87
BspCNI CTCAG 1 cut(s) 700
BspFNI CGCG 1 cut(s) 550
BspLI GGNNCC 2 cut(s) 150, 249
BspMI ACCTGC 1 cut(s) 655
BspPI GGATC 3 cut(s) 242, 255, 626
BspTNI GGTCTC 2 cut(s) 271, 315
BsrDI GCAATG 1 cut(s) 235
BssECI CCNNGG 3 cut(s) 251, 338, 489
BssMI GATC 3 cut(s) 247, 407, 631
BssNI GRCGYC 1 cut(s) 344
BssT1I CCWWGG 2 cut(s) 338, 489
Bst2UI CCWGG 3 cut(s) 204, 252, 636
BstACI GRCGYC 1 cut(s) 344
BstAPI GCANNNNNTGC 1 cut(s) 11
BstDEI CTNAG 5 cut(s) 50, 396, 441, 540, 687
BstDSI CCRYGG 1 cut(s) 489
BstF5I GGATG 3 cut(s) 146, 186, 534
BstFNI CGCG 1 cut(s) 550
BstKTI GATC 3 cut(s) 250, 410, 634
BstMAI GTCTC 3 cut(s) 230, 271, 315
BstMBI GATC 3 cut(s) 247, 407, 631
BstMWI GCNNNNNNNGC 4 cut(s) 11, 334, 430, 526
BstNI CCWGG 3 cut(s) 204, 252, 636
BstNSI RCATGY 2 cut(s) 128, 627
BstSCI CCNGG 3 cut(s) 202, 250, 634
BstSFI CTRYAG 1 cut(s) 111
BstUI CGCG 1 cut(s) 550
BstV1I GCAGC 1 cut(s) 148
BstV2I GAAGAC 2 cut(s) 429, 717
BstX2I RGATCY 2 cut(s) 247, 631
BstYI RGATCY 2 cut(s) 247, 631
BsuI GTATCC 1 cut(s) 488
BsuRI GGCC 3 cut(s) 36, 48, 87
BtgI CCRYGG 1 cut(s) 489
BtsCI GGATG 3 cut(s) 146, 186, 534
BtsI GCAGTG 2 cut(s) 9, 514
BtsIMutI CAGTG 2 cut(s) 9, 514
BveI ACCTGC 1 cut(s) 655
CaiI CAGNNNCTG 1 cut(s) 635
Cfr13I GGNCC 3 cut(s) 34, 149, 218
CseI GACGC 1 cut(s) 333
CviAII CATG 8 cut(s) 125, 320, 371, 490, 503, 608, 624, 726
CviJI RGCY 8 cut(s) 36, 48, 87, 131, 177, 197, 282, 599
CviKI_1 RGCY 8 cut(s) 36, 48, 87, 131, 177, 197, 282, 599
DdeI CTNAG 5 cut(s) 50, 396, 441, 540, 687
DpnI GATC 3 cut(s) 249, 409, 633
DpnII GATC 3 cut(s) 247, 407, 631
Eco130I CCWWGG 2 cut(s) 338, 489
Eco147I AGGCCT 1 cut(s) 48
Eco31I GGTCTC 2 cut(s) 271, 315
Eco47I GGWCC 2 cut(s) 149, 218
EcoO109I RGGNCCY 2 cut(s) 34, 218
EcoRI GAATTC 1 cut(s) 691
EcoRII CCWGG 3 cut(s) 202, 250, 634
EcoT14I CCWWGG 2 cut(s) 338, 489
ErhI CCWWGG 2 cut(s) 338, 489
FaeI CATG 8 cut(s) 128, 323, 374, 493, 506, 611, 627, 729
FalI AAGNNNNNCTT 4 cut(s) 23, 55, 421, 453
FaqI GGGAC 1 cut(s) 464
FatI CATG 8 cut(s) 124, 319, 370, 489, 502, 607, 623, 725
FauI CCCGC 1 cut(s) 534
Fnu4HI GCNGC 3 cut(s) 162, 518, 551
FokI GGATG 3 cut(s) 153, 193, 521
Fsp4HI GCNGC 3 cut(s) 162, 518, 551
FspBI CTAG 3 cut(s) 306, 471, 612
GluI GCNGC 3 cut(s) 162, 518, 551
HaeIII GGCC 3 cut(s) 36, 48, 87
HapII CCGG 4 cut(s) 283, 314, 329, 481
HgaI GACGC 1 cut(s) 333
Hin1I GRCGYC 1 cut(s) 344
Hin1II CATG 8 cut(s) 128, 323, 374, 493, 506, 611, 627, 729
HinfI GANTC 6 cut(s) 275, 384, 389, 494, 512, 569
HpaII CCGG 4 cut(s) 283, 314, 329, 481
Hpy188I TCNGA 3 cut(s) 412, 619, 690
Hpy188III TCNNGA 5 cut(s) 40, 216, 272, 591, 701
Hpy99I CGWCG 1 cut(s) 349
HpyAV CCTTC 2 cut(s) 25, 280
HpyCH4V TGCA 4 cut(s) 14, 97, 627, 650
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 334, 430, 526
HpyF3I CTNAG 5 cut(s) 50, 396, 441, 540, 687
Hsp92I GRCGYC 1 cut(s) 344
Hsp92II CATG 8 cut(s) 128, 323, 374, 493, 506, 611, 627, 729
Kzo9I GATC 3 cut(s) 247, 407, 631
LmnI GCTCC 1 cut(s) 202
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 1 cut(s) 596
MaeI CTAG 3 cut(s) 306, 471, 612
MalI GATC 3 cut(s) 249, 409, 633
MboI GATC 3 cut(s) 247, 407, 631
MboII GAAGA 2 cut(s) 429, 722
MflI RGATCY 2 cut(s) 247, 631
MluCI AATT 3 cut(s) 66, 498, 691
MlyI GAGTC 2 cut(s) 383, 503
MnlI CCTC 7 cut(s) 47, 139, 238, 393, 467, 583, 697
MseI TTAA 1 cut(s) 224
MslI CAYNNNNRTG 3 cut(s) 26, 375, 507
MspI CCGG 4 cut(s) 283, 314, 329, 481
MspR9I CCNGG 3 cut(s) 204, 252, 636
MvaI CCWGG 3 cut(s) 204, 252, 636
MvnI CGCG 1 cut(s) 550
MwoI GCNNNNNNNGC 4 cut(s) 11, 334, 430, 526
NcoI CCATGG 1 cut(s) 489
NdeII GATC 3 cut(s) 247, 407, 631
NlaIII CATG 8 cut(s) 128, 323, 374, 493, 506, 611, 627, 729
NlaIV GGNNCC 2 cut(s) 150, 249
NspI RCATGY 2 cut(s) 128, 627
PceI AGGCCT 1 cut(s) 48
PfeI GAWTC 4 cut(s) 275, 384, 512, 569
PfoI TCCNGGA 1 cut(s) 634
PkrI GCNGC 3 cut(s) 163, 519, 552
PleI GAGTC 2 cut(s) 383, 502
PpsI GAGTC 2 cut(s) 383, 502
PpuMI RGGWCCY 1 cut(s) 218
PsiI TTATAA 1 cut(s) 660
Psp5II RGGWCCY 1 cut(s) 218
Psp6I CCWGG 3 cut(s) 202, 250, 634
PspGI CCWGG 3 cut(s) 202, 250, 634
PspN4I GGNNCC 2 cut(s) 150, 249
PspPI GGNCC 3 cut(s) 34, 149, 218
PspPPI RGGWCCY 1 cut(s) 218
PstNI CAGNNNCTG 1 cut(s) 635
PsuI RGATCY 2 cut(s) 247, 631
RseI CAYNNNNRTG 3 cut(s) 26, 375, 507
SaqAI TTAA 1 cut(s) 224
SatI GCNGC 3 cut(s) 162, 518, 551
Sau3AI GATC 3 cut(s) 247, 407, 631
Sau96I GGNCC 3 cut(s) 34, 149, 218
SchI GAGTC 2 cut(s) 383, 503
ScrFI CCNGG 3 cut(s) 204, 252, 636
SetI ASST 7 cut(s) 179, 199, 205, 223, 311, 478, 649
SfaNI GCATC 1 cut(s) 596
SfcI CTRYAG 1 cut(s) 111
SinI GGWCC 2 cut(s) 149, 218
SmiMI CAYNNNNRTG 3 cut(s) 26, 375, 507
SmlI CTYRAG 1 cut(s) 270
SmoI CTYRAG 1 cut(s) 270
Sse9I AATT 3 cut(s) 66, 498, 691
SseBI AGGCCT 1 cut(s) 48
SsiI CCGC 4 cut(s) 433, 518, 527, 550
SspMI CTAG 3 cut(s) 306, 471, 612
StuI AGGCCT 1 cut(s) 48
StyD4I CCNGG 3 cut(s) 202, 250, 634
StyI CCWWGG 2 cut(s) 338, 489
TaqI TCGA 1 cut(s) 387
TasI AATT 3 cut(s) 66, 498, 691
TauI GCSGC 2 cut(s) 520, 553
TfiI GAWTC 4 cut(s) 275, 384, 512, 569
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TscAI CASTG 2 cut(s) 16, 514
TseI GCWGC 1 cut(s) 161
TspDTI ATGAA 4 cut(s) 44, 197, 201, 491
TspRI CASTG 2 cut(s) 16, 514
VpaK11BI GGWCC 2 cut(s) 149, 218
XapI RAATTY 2 cut(s) 66, 691
XceI RCATGY 2 cut(s) 128, 627
XspI CTAG 3 cut(s) 306, 471, 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.