Rroxscaffold_7G00180940

CRIB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0007680
Physical Location & Seq
Reverse (-)
20249116 .. 20250092
977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00180940.1

Sequence Viewer

Length: 648 bp
ATGAAGGGCCTCTTAAAAGGCCTGAGATACATTTCTCAAATTTTTGATGATGACAAAGAACAAGAAATTCAGATTGGGTTTCCTACAGATGTAAAGCATGTGGCTCATATAGGCTGGGATGGTCCATCAACGGCAAGTAGTTCTCCAAGCTGGATGAATGAGTTTCAATCTCCACCAGGATTTGCATCAGCACCTTTAAGTCAGAATGGAGAGATGACCGATAATAATATAGTTAAACGGGTCTCTGAAGATTCAAGCCGGAGAAGTTCAAGGAGTTCAATGTCTCCGACACATGACCCTGAATTGCCCAAGTCATCGAGAAGGCAATCATCACGTGGGCATGAAGGTGGTGGTGGTGGAACTGAATCCCCAAGGGAAAAATCAGATAAACCTAGGCAAACAAGAAGGCCTTCTAGGAGGGACTTATCGGAGGGTAATAGAGGCAGCCGTCAGGAAGCCACAGATACAAGTAGCGAATCCTCCCTACCAGATATCCCCAAGAAATCACGGCGGAAGAAATCAAAAGAATCGGCGATTGGGGGGTCCAAAAAAAAAAAAGATCCTGGCACCCCATCTACAGCAAAGTCCAACAGCATTGAGCTATCTCAGAATTCTTTTCAAGAGGGGGAAGACAAGGGTTTTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBD

Protein Analysis

215

Amino Acids

23.53

Weight (kDa)

9.62

Isoelectric Point (pI)

88.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 566
AciI CCGC 1 cut(s) 511
AclWI GGATC 1 cut(s) 554
AcsI RAATTY 3 cut(s) 39, 66, 610
AcuI CTGAAG 1 cut(s) 267
AcvI CACGTG 1 cut(s) 335
AgsI TTSAA 5 cut(s) 167, 255, 270, 279, 620
AjnI CCWGG 2 cut(s) 175, 562
AjuI GAANNNNNNNTTGG 4 cut(s) 57, 89, 519, 551
AluBI AGCT 2 cut(s) 150, 601
AluI AGCT 2 cut(s) 150, 601
Alw26I GTCTC 2 cut(s) 247, 288
AlwI GGATC 1 cut(s) 554
AoxI GGCC 3 cut(s) 7, 19, 407
ApeKI GCWGC 1 cut(s) 444
ApoI RAATTY 3 cut(s) 39, 66, 610
Asp700I GAANNNNTTC 1 cut(s) 409
AspA2I CCTAGG 1 cut(s) 392
AspS9I GGNCC 3 cut(s) 7, 122, 543
AvaII GGWCC 2 cut(s) 122, 543
AvrII CCTAGG 1 cut(s) 392
BanI GGYRCC 1 cut(s) 566
BbrPI CACGTG 1 cut(s) 335
BbsI GAAGAC 1 cut(s) 636
BbvI GCAGC 1 cut(s) 456
BccI CCATC 3 cut(s) 113, 133, 580
BceAI ACGGC 3 cut(s) 147, 432, 524
BciT130I CCWGG 2 cut(s) 177, 564
BcoDI GTCTC 2 cut(s) 247, 288
BfaI CTAG 2 cut(s) 393, 414
BfmI CTRYAG 2 cut(s) 84, 576
BisI GCNGC 1 cut(s) 445
BlnI CCTAGG 1 cut(s) 392
BlsI GCNGC 1 cut(s) 446
Bme1390I CCNGG 2 cut(s) 177, 564
Bme18I GGWCC 2 cut(s) 122, 543
BmgT120I GGNCC 3 cut(s) 7, 122, 543
BmiI GGNNCC 2 cut(s) 544, 568
BmrFI CCNGG 2 cut(s) 177, 564
BmsI GCATC 1 cut(s) 194
BpiI GAAGAC 1 cut(s) 636
BsaAI YACGTR 1 cut(s) 335
BsaBI GATNNNNATC 1 cut(s) 184
BsaI GGTCTC 1 cut(s) 247
BsaJI CCNNGG 2 cut(s) 371, 392
Bse8I GATNNNNATC 1 cut(s) 184
BseBI CCWGG 2 cut(s) 177, 564
BseDI CCNNGG 2 cut(s) 371, 392
BseGI GGATG 2 cut(s) 124, 159
BseJI GATNNNNATC 1 cut(s) 184
BseMII CTCAG 2 cut(s) 14, 620
BseXI GCAGC 1 cut(s) 456
BseYI CCCAGC 1 cut(s) 114
BshFI GGCC 3 cut(s) 9, 21, 409
BshNI GGYRCC 1 cut(s) 566
BsiSI CCGG 1 cut(s) 259
BslFI GGGAC 1 cut(s) 434
BsmAI GTCTC 2 cut(s) 247, 288
BsmFI GGGAC 1 cut(s) 434
BsnI GGCC 3 cut(s) 9, 21, 409
Bso31I GGTCTC 1 cut(s) 247
Bsp143I GATC 1 cut(s) 559
BspACI CCGC 1 cut(s) 511
BspANI GGCC 3 cut(s) 9, 21, 409
BspCNI CTCAG 2 cut(s) 15, 619
BspLI GGNNCC 2 cut(s) 544, 568
BspPI GGATC 1 cut(s) 554
BspT107I GGYRCC 1 cut(s) 566
BspTNI GGTCTC 1 cut(s) 247
BssECI CCNNGG 2 cut(s) 371, 392
BssMI GATC 1 cut(s) 559
BssT1I CCWWGG 2 cut(s) 371, 392
Bst2UI CCWGG 2 cut(s) 177, 564
BstBAI YACGTR 1 cut(s) 335
BstDEI CTNAG 2 cut(s) 23, 606
BstF5I GGATG 2 cut(s) 124, 159
BstKTI GATC 1 cut(s) 562
BstMAI GTCTC 2 cut(s) 247, 288
BstMBI GATC 1 cut(s) 559
BstNI CCWGG 2 cut(s) 177, 564
BstNSI RCATGY 1 cut(s) 101
BstSCI CCNGG 2 cut(s) 175, 562
BstSFI CTRYAG 2 cut(s) 84, 576
BstV1I GCAGC 1 cut(s) 456
BstV2I GAAGAC 1 cut(s) 636
BstX2I RGATCY 1 cut(s) 559
BstYI RGATCY 1 cut(s) 559
BsuRI GGCC 3 cut(s) 9, 21, 409
BtsCI GGATG 2 cut(s) 124, 159
Cfr13I GGNCC 3 cut(s) 7, 122, 543
CviAII CATG 4 cut(s) 98, 293, 341, 645
DdeI CTNAG 2 cut(s) 23, 606
DpnI GATC 1 cut(s) 561
DpnII GATC 1 cut(s) 559
EciI GGCGGA 1 cut(s) 526
Eco130I CCWWGG 2 cut(s) 371, 392
Eco147I AGGCCT 2 cut(s) 21, 409
Eco31I GGTCTC 1 cut(s) 247
Eco32I GATATC 1 cut(s) 493
Eco47I GGWCC 2 cut(s) 122, 543
Eco57I CTGAAG 1 cut(s) 267
Eco72I CACGTG 1 cut(s) 335
EcoO109I RGGNCCY 1 cut(s) 7
EcoRI GAATTC 1 cut(s) 610
EcoRII CCWGG 2 cut(s) 175, 562
EcoRV GATATC 1 cut(s) 493
EcoT14I CCWWGG 2 cut(s) 371, 392
ErhI CCWWGG 2 cut(s) 371, 392
FaeI CATG 4 cut(s) 101, 296, 344, 648
FaiI YATR 7 cut(s) 99, 108, 110, 230, 294, 342, 646
FalI AAGNNNNNCTT 3 cut(s) 28, 394, 426
FaqI GGGAC 1 cut(s) 434
FatI CATG 4 cut(s) 97, 292, 340, 644
Fnu4HI GCNGC 1 cut(s) 445
FokI GGATG 2 cut(s) 131, 166
Fsp4HI GCNGC 1 cut(s) 445
FspBI CTAG 2 cut(s) 393, 414
GluI GCNGC 1 cut(s) 445
GsaI CCCAGC 1 cut(s) 118
HaeIII GGCC 3 cut(s) 9, 21, 409
HapII CCGG 1 cut(s) 259
Hin1II CATG 4 cut(s) 101, 296, 344, 648
HinfI GANTC 4 cut(s) 251, 365, 476, 527
HpaII CCGG 1 cut(s) 259
Hpy188I TCNGA 7 cut(s) 72, 204, 247, 288, 385, 430, 609
Hpy188III TCNNGA 3 cut(s) 318, 452, 620
HpyAV CCTTC 4 cut(s) 315, 338, 399, 420
HpyCH4IV ACGT 1 cut(s) 334
HpyCH4V TGCA 1 cut(s) 185
HpyF3I CTNAG 2 cut(s) 23, 606
HpySE526I ACGT 1 cut(s) 334
Hsp92II CATG 4 cut(s) 101, 296, 344, 648
Kzo9I GATC 1 cut(s) 559
Lsp1109I GCAGC 1 cut(s) 456
LweI GCATC 1 cut(s) 194
MaeI CTAG 2 cut(s) 393, 414
MaeII ACGT 1 cut(s) 334
MalI GATC 1 cut(s) 561
MboI GATC 1 cut(s) 559
MboII GAAGA 3 cut(s) 260, 526, 641
MflI RGATCY 1 cut(s) 559
MluCI AATT 4 cut(s) 39, 66, 302, 610
MmeI TCCRAC 2 cut(s) 311, 612
MnlI CCTC 6 cut(s) 20, 411, 424, 434, 490, 616
MroXI GAANNNNTTC 1 cut(s) 409
MseI TTAA 3 cut(s) 14, 197, 234
MslI CAYNNNNRTG 1 cut(s) 345
MspI CCGG 1 cut(s) 259
MspR9I CCNGG 2 cut(s) 177, 564
MvaI CCWGG 2 cut(s) 177, 564
NdeII GATC 1 cut(s) 559
NlaIII CATG 4 cut(s) 101, 296, 344, 648
NlaIV GGNNCC 2 cut(s) 544, 568
NspI RCATGY 1 cut(s) 101
PceI AGGCCT 2 cut(s) 21, 409
PdmI GAANNNNTTC 1 cut(s) 409
PfeI GAWTC 4 cut(s) 251, 365, 476, 527
PkrI GCNGC 1 cut(s) 446
PmaCI CACGTG 1 cut(s) 335
PmlI CACGTG 1 cut(s) 335
Ppu21I YACGTR 1 cut(s) 335
Psp6I CCWGG 2 cut(s) 175, 562
PspCI CACGTG 1 cut(s) 335
PspFI CCCAGC 1 cut(s) 114
PspGI CCWGG 2 cut(s) 175, 562
PspN4I GGNNCC 2 cut(s) 544, 568
PspPI GGNCC 3 cut(s) 7, 122, 543
PsuI RGATCY 1 cut(s) 559
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 3 cut(s) 14, 197, 234
SatI GCNGC 1 cut(s) 445
Sau3AI GATC 1 cut(s) 559
Sau96I GGNCC 3 cut(s) 7, 122, 543
ScrFI CCNGG 2 cut(s) 177, 564
SetI ASST 6 cut(s) 152, 196, 337, 349, 394, 603
SfaNI GCATC 1 cut(s) 194
SfcI CTRYAG 2 cut(s) 84, 576
SinI GGWCC 2 cut(s) 122, 543
SmiMI CAYNNNNRTG 1 cut(s) 345
Sse9I AATT 4 cut(s) 39, 66, 302, 610
SseBI AGGCCT 2 cut(s) 21, 409
SsiI CCGC 1 cut(s) 511
SspMI CTAG 2 cut(s) 393, 414
StuI AGGCCT 2 cut(s) 21, 409
StyD4I CCNGG 2 cut(s) 175, 562
StyI CCWWGG 2 cut(s) 371, 392
TaiI ACGT 1 cut(s) 337
TaqI TCGA 1 cut(s) 317
TaqII GACCGA 1 cut(s) 233
TasI AATT 4 cut(s) 39, 66, 302, 610
TfiI GAWTC 4 cut(s) 251, 365, 476, 527
Tru1I TTAA 3 cut(s) 14, 197, 234
Tru9I TTAA 3 cut(s) 14, 197, 234
TseI GCWGC 1 cut(s) 444
TspDTI ATGAA 3 cut(s) 17, 170, 357
VpaK11BI GGWCC 2 cut(s) 122, 543
XapI RAATTY 3 cut(s) 39, 66, 610
XceI RCATGY 1 cut(s) 101
XmaJI CCTAGG 1 cut(s) 392
XmnI GAANNNNTTC 1 cut(s) 409
XspI CTAG 2 cut(s) 393, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.