Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007680

Physical Location & Seq

Genomic Coordinates Reverse (-)

27361590 .. 27362990

Gene Structure 1401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1180200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCGGCTAAAGATGCAAATAACGGCAAGATGGTGGTGAAAGATGCAACTAATAACAAGATGAAGGGCCTCTTGAAAGGACTAAGATACATTTCTCAAATATTTGATGAAAACAAAGACCAAGAAATGCAGATTGGACTTCCTACGGACGTAAAGCATGTGGCTCATATAGGATGGGATGGCCCTTCAACTGCTAGTTCACCAAGCTGGATGAATGAGTTTCAAGCTCCACCCGGATTTGAACAATCACCACCTTTAGGCAATGGTGAGACGAAGGAAGATTCTAGGGTCAAATGGGTCTCTGAAGATTCGAGCCGGAAAGGTTCGAGGGGTGCTAGGTCACCAGGGCATGACGTGCCGGATTTACCCAAGTCGTCAAGGCGGCATTCATCAAACGGGCACGGAGTTGGTGGACCGGATTCCCCCAAGAGGGGAAAATCAGATAAACCGAAGCAAACAAGGCGGTCTTCTAAGAACAAGGACACATCGGATAGTAGTATTAGAGGCATCCGGCAATCCACGGATCCAAGTCAAGACAGCGAATCGCCGCAAAACCTACCGGACATCCCTAAGAAAACGCAGCGGAAGAAGTCGAAAGACTCATCCTTTGGGGGGACATCAGGGTCAAGAAGATCTAAACACCATGCTAGTTCAGAAACATGTACATCTCCTGGACACCAATCTGCAACCATTTCTCAGAATTCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

237

Amino Acids

25.59

Weight (kDa)

9.83

Isoelectric Point (pI)

78.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20430 AT4G28556 AT4G28556
fragaria_vesca	FvH4_2g21080
malus_domestica	MD00G1200000.v1.1 MD05G1193500.v1.1 MD10G1180200.v1.1
prunus_persica	Prupe.8G220200_v2.0.a1 Prupe.8G220200_v2.0.a1
pyrus_communis	pycom05g18090 pycom10g15610
rosa_chinensis	RchiOBHm_Chr6g0287541
rosa_laevigata	RLG00000012486
rosa_roxburghii	Rroxscaffold_7G00180940 Rroxscaffold_7G00181390
rosa_rugosa	Rorug06G0188800 Rorug06G0188900 Rorug06G0188900
rosa_samantha	Rh6AG300100 Rh6BG305600 Rh6CG303900 Rh6CG313900 Rh6DG297300
rosa_wichuraiana	Rw6G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	622
AciI	CCGC	5 cut(s)	5, 382, 463, 548, 583
AclWI	GGATC	2 cut(s)	518, 531
AcsI	RAATTY	1 cut(s)	700
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	1 cut(s)	664
AfiI	CCNNNNNNNGG	5 cut(s)	257, 429, 430, 431, 612
AflIII	ACRYGT	1 cut(s)	659
AgsI	TTSAA	4 cut(s)	76, 189, 224, 242
AjiI	CACGTC	1 cut(s)	355
AjnI	CCWGG	2 cut(s)	343, 670
AjuI	GAANNNNNNNTTGG	2 cut(s)	117, 149
AluBI	AGCT	2 cut(s)	207, 227
AluI	AGCT	2 cut(s)	207, 227
Alw26I	GTCTC	2 cut(s)	263, 304
AlwI	GGATC	2 cut(s)	518, 531
AoxI	GGCC	2 cut(s)	67, 181
ApeKI	GCWGC	1 cut(s)	580
ApoI	RAATTY	1 cut(s)	700
ArsI	GACNNNNNNTTYG	2 cut(s)	590, 622
AspS9I	GGNCC	3 cut(s)	67, 182, 413
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	5 cut(s)	49, 192, 240, 278, 333
AvaII	GGWCC	1 cut(s)	413
BaeGI	GKGCMC	1 cut(s)	402
BamHI	GGATCC	1 cut(s)	523
BbsI	GAAGAC	1 cut(s)	459
BbvI	GCAGC	1 cut(s)	592
BccI	CCATC	3 cut(s)	25, 168, 173
BceAI	ACGGC	1 cut(s)	40
BciT130I	CCWGG	2 cut(s)	345, 672
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	2 cut(s)	263, 304
BfaI	CTAG	4 cut(s)	195, 285, 336, 648
BglII	AGATCT	1 cut(s)	632
BisI	GCNGC	4 cut(s)	6, 383, 548, 581
BlsI	GCNGC	4 cut(s)	7, 384, 549, 582
Bme1390I	CCNGG	3 cut(s)	234, 345, 672
Bme18I	GGWCC	1 cut(s)	413
BmgBI	CACGTC	1 cut(s)	355
BmgT120I	GGNCC	3 cut(s)	67, 182, 413
BmiI	GGNNCC	1 cut(s)	525
BmrFI	CCNGG	3 cut(s)	234, 345, 672
BmsI	GCATC	3 cut(s)	4, 34, 516
BpiI	GAAGAC	1 cut(s)	459
BpuMI	CCSGG	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	304
BsaJI	CCNNGG	2 cut(s)	344, 519
BsaWI	WCCGGW	2 cut(s)	415, 559
Bsc4I	CCNNNNNNNGG	5 cut(s)	257, 429, 430, 431, 612
Bse3DI	GCAATG	1 cut(s)	268
BseBI	CCWGG	2 cut(s)	345, 672
BseDI	CCNNGG	2 cut(s)	344, 519
BseGI	GGATG	6 cut(s)	179, 184, 216, 507, 564, 602
BseLI	CCNNNNNNNGG	5 cut(s)	257, 429, 430, 431, 612
BseMI	GCAATG	1 cut(s)	268
BseMII	CTCAG	1 cut(s)	710
BseSI	GKGCMC	1 cut(s)	402
BseXI	GCAGC	1 cut(s)	592
BshFI	GGCC	2 cut(s)	69, 183
BsiSI	CCGG	6 cut(s)	234, 316, 359, 416, 511, 560
BslFI	GGGAC	1 cut(s)	628
BslI	CCNNNNNNNGG	5 cut(s)	257, 429, 430, 431, 612
BsmAI	GTCTC	2 cut(s)	263, 304
BsmBI	CGTCTC	1 cut(s)	263
BsmFI	GGGAC	1 cut(s)	628
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	2 cut(s)	69, 183
Bso31I	GGTCTC	1 cut(s)	304
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp1407I	TGTACA	1 cut(s)	662
Bsp143I	GATC	2 cut(s)	523, 632
BspACI	CCGC	5 cut(s)	5, 382, 463, 548, 583
BspANI	GGCC	2 cut(s)	69, 183
BspCNI	CTCAG	1 cut(s)	709
BspLI	GGNNCC	1 cut(s)	525
BspPI	GGATC	2 cut(s)	518, 531
BspTNI	GGTCTC	1 cut(s)	304
BsrDI	GCAATG	1 cut(s)	268
BsrGI	TGTACA	1 cut(s)	662
BssECI	CCNNGG	2 cut(s)	344, 519
BssMI	GATC	2 cut(s)	523, 632
Bst2UI	CCWGG	2 cut(s)	345, 672
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstAUI	TGTACA	1 cut(s)	662
BstDEI	CTNAG	4 cut(s)	83, 471, 570, 696
BstDSI	CCRYGG	1 cut(s)	519
BstEII	GGTNACC	1 cut(s)	339
BstF5I	GGATG	6 cut(s)	179, 184, 216, 507, 564, 602
BstKTI	GATC	2 cut(s)	526, 635
BstMAI	GTCTC	2 cut(s)	263, 304
BstMBI	GATC	2 cut(s)	523, 632
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 355, 460
BstNI	CCWGG	2 cut(s)	345, 672
BstNSI	RCATGY	2 cut(s)	161, 663
BstPI	GGTNACC	1 cut(s)	339
BstSCI	CCNGG	3 cut(s)	232, 343, 670
BstSLI	GKGCMC	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	592
BstV2I	GAAGAC	1 cut(s)	459
BstX2I	RGATCY	2 cut(s)	523, 632
BstYI	RGATCY	2 cut(s)	523, 632
BsuRI	GGCC	2 cut(s)	69, 183
BtgI	CCRYGG	1 cut(s)	519
BtrI	CACGTC	1 cut(s)	355
BtsCI	GGATG	6 cut(s)	179, 184, 216, 507, 564, 602
Cfr13I	GGNCC	3 cut(s)	67, 182, 413
Csp6I	GTAC	1 cut(s)	663
CviAII	CATG	4 cut(s)	158, 350, 644, 660
CviJI	RGCY	7 cut(s)	8, 69, 164, 183, 207, 227, 315
CviKI_1	RGCY	7 cut(s)	8, 69, 164, 183, 207, 227, 315
CviQI	GTAC	1 cut(s)	663
DdeI	CTNAG	4 cut(s)	83, 471, 570, 696
DpnI	GATC	2 cut(s)	525, 634
DpnII	GATC	2 cut(s)	523, 632
DrdI	GACNNNNNNGTC	1 cut(s)	622
DseDI	GACNNNNNNGTC	1 cut(s)	622
Eco31I	GGTCTC	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	413
Eco57I	CTGAAG	1 cut(s)	324
Eco91I	GGTNACC	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	67
EcoO65I	GGTNACC	1 cut(s)	339
EcoRI	GAATTC	1 cut(s)	700
EcoRII	CCWGG	2 cut(s)	343, 670
Esp3I	CGTCTC	1 cut(s)	263
FaeI	CATG	4 cut(s)	161, 353, 647, 663
FaiI	YATR	6 cut(s)	159, 168, 170, 351, 645, 661
FalI	AAGNNNNNCTT	4 cut(s)	56, 88, 451, 483
FaqI	GGGAC	1 cut(s)	628
FatI	CATG	4 cut(s)	157, 349, 643, 659
Fnu4HI	GCNGC	4 cut(s)	6, 383, 548, 581
FokI	GGATG	6 cut(s)	186, 191, 223, 494, 551, 589
Fsp4HI	GCNGC	4 cut(s)	6, 383, 548, 581
FspBI	CTAG	4 cut(s)	195, 285, 336, 648
GluI	GCNGC	4 cut(s)	6, 383, 548, 581
HaeIII	GGCC	2 cut(s)	69, 183
HapII	CCGG	6 cut(s)	234, 316, 359, 416, 511, 560
Hin1II	CATG	4 cut(s)	161, 353, 647, 663
HinfI	GANTC	5 cut(s)	281, 308, 419, 542, 599
HpaII	CCGG	6 cut(s)	234, 316, 359, 416, 511, 560
HphI	GGTGA	5 cut(s)	49, 192, 240, 278, 333
Hpy166II	GTNNAC	2 cut(s)	200, 413
Hpy188I	TCNGA	5 cut(s)	304, 442, 490, 655, 699
Hpy188III	TCNNGA	3 cut(s)	73, 533, 627
Hpy8I	GTNNAC	2 cut(s)	200, 413
HpyAV	CCTTC	3 cut(s)	58, 195, 268
HpyCH4IV	ACGT	2 cut(s)	150, 354
HpyCH4V	TGCA	4 cut(s)	17, 47, 130, 686
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 355, 460
HpyF3I	CTNAG	4 cut(s)	83, 471, 570, 696
HpySE526I	ACGT	2 cut(s)	150, 354
Hsp92II	CATG	4 cut(s)	161, 353, 647, 663
Kzo9I	GATC	2 cut(s)	523, 632
LmnI	GCTCC	1 cut(s)	232
Lsp1109I	GCAGC	1 cut(s)	592
LweI	GCATC	3 cut(s)	4, 34, 516
MaeI	CTAG	4 cut(s)	195, 285, 336, 648
MaeII	ACGT	2 cut(s)	150, 354
MaeIII	GTNAC	1 cut(s)	339
MalI	GATC	2 cut(s)	525, 634
MboI	GATC	2 cut(s)	523, 632
MboII	GAAGA	5 cut(s)	290, 317, 459, 598, 642
MflI	RGATCY	2 cut(s)	523, 632
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	1 cut(s)	700
MlyI	GAGTC	1 cut(s)	593
MnlI	CCTC	4 cut(s)	80, 321, 423, 497
MseI	TTAA	1 cut(s)	709
MspA1I	CMGCKG	1 cut(s)	583
MspI	CCGG	6 cut(s)	234, 316, 359, 416, 511, 560
MspR9I	CCNGG	3 cut(s)	234, 345, 672
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	2 cut(s)	345, 672
MwoI	GCNNNNNNNGC	3 cut(s)	14, 355, 460
NciI	CCSGG	1 cut(s)	234
NdeII	GATC	2 cut(s)	523, 632
NlaIII	CATG	4 cut(s)	161, 353, 647, 663
NlaIV	GGNNCC	1 cut(s)	525
NmuCI	GTSAC	1 cut(s)	339
NspI	RCATGY	2 cut(s)	161, 663
PciI	ACATGT	1 cut(s)	659
PctI	GAATGC	1 cut(s)	385
PfeI	GAWTC	4 cut(s)	281, 308, 419, 542
PfoI	TCCNGGA	1 cut(s)	670
PkrI	GCNGC	4 cut(s)	7, 384, 549, 582
PleI	GAGTC	1 cut(s)	593
PpsI	GAGTC	1 cut(s)	593
PscI	ACATGT	1 cut(s)	659
Psp6I	CCWGG	2 cut(s)	343, 670
PspEI	GGTNACC	1 cut(s)	339
PspGI	CCWGG	2 cut(s)	343, 670
PspN4I	GGNNCC	1 cut(s)	525
PspPI	GGNCC	3 cut(s)	67, 182, 413
PsuI	RGATCY	2 cut(s)	523, 632
RsaI	GTAC	1 cut(s)	664
RsaNI	GTAC	1 cut(s)	663
SaqAI	TTAA	1 cut(s)	709
SatI	GCNGC	4 cut(s)	6, 383, 548, 581
Sau3AI	GATC	2 cut(s)	523, 632
Sau96I	GGNCC	3 cut(s)	67, 182, 413
SchI	GAGTC	1 cut(s)	593
ScrFI	CCNGG	3 cut(s)	234, 345, 672
SduI	GDGCHC	1 cut(s)	402
SetI	ASST	8 cut(s)	153, 209, 229, 256, 325, 341, 357, 558
SfaNI	GCATC	3 cut(s)	4, 34, 516
SinI	GGWCC	1 cut(s)	413
Sse9I	AATT	1 cut(s)	700
SsiI	CCGC	5 cut(s)	5, 382, 463, 548, 583
SspI	AATATT	1 cut(s)	102
SspMI	CTAG	4 cut(s)	195, 285, 336, 648
StyD4I	CCNGG	3 cut(s)	232, 343, 670
TaiI	ACGT	2 cut(s)	153, 357
TaqI	TCGA	3 cut(s)	311, 326, 593
TasI	AATT	1 cut(s)	700
TatI	WGTACW	1 cut(s)	662
TauI	GCSGC	3 cut(s)	8, 385, 550
TfiI	GAWTC	4 cut(s)	281, 308, 419, 542
Tru1I	TTAA	1 cut(s)	709
Tru9I	TTAA	1 cut(s)	709
TseFI	GTSAC	1 cut(s)	339
TseI	GCWGC	1 cut(s)	580
Tsp45I	GTSAC	1 cut(s)	339
TspDTI	ATGAA	4 cut(s)	77, 123, 227, 378
TspGWI	ACGGA	3 cut(s)	161, 417, 536
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	1 cut(s)	700
XceI	RCATGY	2 cut(s)	161, 663
XspI	CTAG	4 cut(s)	195, 285, 336, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.