Rw6G025890

CRIB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0007680
Physical Location & Seq
Reverse (-)
49345066 .. 49346652
1587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G025890.1

Sequence Viewer

Length: 675 bp
ATGTCGAATAAAGAAAATAGCAGTAAGATGAAGGGCCTCTTAAAAGGCCTGAGATACATTTCTCAAATGTTTGATGATGACAAAGAACAAGAAATACAGATTGGGTTTCCTACAGACGTAAAGCATGTGGCTCATATAGGCTGGGATGGTCCATCAACGGCAAGTAGTTCTCCAAGCTGGATGAATGAGTTTCAATCTCCACCAGGATTTGCATCAGCACCTTTAAGTCAGAATGGAGAGATGACCGACAATAATAAGGTCAAATGCATCTCTGAAGATTCAAGCCGGAGAAGTTCAAGGAGTTCAATGTCTCCGACACATGACCCTGAATTGCCCAAGTCATCGAGAAGGCAATCATCACGGGGGCATGATGGAGGTGGCGGTGGAACTGAATCCCCAAGGGAAAAATCAGATAAACCTAGGCAAACAAGAAGGCCTTCTAGGAGGGACTTATCGGAGGGTAATAGAGGCAGCCGTCAGGAAGCCACAGATACAAGTACCGAATCCTCCCTACCGGATATCCCCAAGAAATCACGGCGGAAGAAATCAAAAGAATCGGCGATTGGGGGGTCCAAAAAAAAAAAGGATCCTGGCACCCCATCTACAGCAAAGTCCAATAGCATTGAGCTATCTCAGAATTCTTTTCAAGAGGGGGAAGACAAAGGGTTTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBD

Protein Analysis

224

Amino Acids

24.53

Weight (kDa)

9.56

Isoelectric Point (pI)

87.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBD PF00786 33 - 66 9.8e-06 P21-Rho-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 593
AciI CCGC 2 cut(s) 381, 538
AclWI GGATC 2 cut(s) 581, 594
AcsI RAATTY 1 cut(s) 637
AcuI CTGAAG 1 cut(s) 294
AfaI GTAC 1 cut(s) 499
AgsI TTSAA 5 cut(s) 194, 282, 297, 306, 647
AjnI CCWGG 2 cut(s) 202, 589
AjuI GAANNNNNNNTTGG 4 cut(s) 84, 116, 546, 578
AluBI AGCT 2 cut(s) 177, 628
AluI AGCT 2 cut(s) 177, 628
Alw26I GTCTC 1 cut(s) 315
AlwI GGATC 2 cut(s) 581, 594
AoxI GGCC 3 cut(s) 34, 46, 434
ApeKI GCWGC 1 cut(s) 471
ApoI RAATTY 1 cut(s) 637
Asp700I GAANNNNTTC 1 cut(s) 436
AspA2I CCTAGG 1 cut(s) 419
AspS9I GGNCC 3 cut(s) 34, 149, 570
AvaII GGWCC 2 cut(s) 149, 570
AvrII CCTAGG 1 cut(s) 419
BamHI GGATCC 1 cut(s) 586
BanI GGYRCC 1 cut(s) 593
BbsI GAAGAC 1 cut(s) 663
BbvI GCAGC 1 cut(s) 483
BccI CCATC 4 cut(s) 140, 160, 365, 607
BceAI ACGGC 3 cut(s) 174, 459, 551
BciT130I CCWGG 2 cut(s) 204, 591
BcoDI GTCTC 1 cut(s) 315
BfaI CTAG 2 cut(s) 420, 441
BfmI CTRYAG 2 cut(s) 111, 603
BisI GCNGC 1 cut(s) 472
BlnI CCTAGG 1 cut(s) 419
BlsI GCNGC 1 cut(s) 473
Bme1390I CCNGG 2 cut(s) 204, 591
Bme18I GGWCC 2 cut(s) 149, 570
BmgT120I GGNCC 3 cut(s) 34, 149, 570
BmiI GGNNCC 3 cut(s) 571, 588, 595
BmrFI CCNGG 2 cut(s) 204, 591
BmsI GCATC 2 cut(s) 221, 276
BpiI GAAGAC 1 cut(s) 663
BsaBI GATNNNNATC 1 cut(s) 211
BsaJI CCNNGG 2 cut(s) 398, 419
BsaWI WCCGGW 1 cut(s) 514
Bse8I GATNNNNATC 1 cut(s) 211
BseBI CCWGG 2 cut(s) 204, 591
BseDI CCNNGG 2 cut(s) 398, 419
BseGI GGATG 2 cut(s) 151, 186
BseJI GATNNNNATC 1 cut(s) 211
BseMII CTCAG 2 cut(s) 41, 647
BseXI GCAGC 1 cut(s) 483
BseYI CCCAGC 1 cut(s) 141
BshFI GGCC 3 cut(s) 36, 48, 436
BshNI GGYRCC 1 cut(s) 593
BsiSI CCGG 2 cut(s) 286, 515
BslFI GGGAC 1 cut(s) 461
BsmAI GTCTC 1 cut(s) 315
BsmFI GGGAC 1 cut(s) 461
BsnI GGCC 3 cut(s) 36, 48, 436
Bsp143I GATC 1 cut(s) 586
BspACI CCGC 2 cut(s) 381, 538
BspANI GGCC 3 cut(s) 36, 48, 436
BspCNI CTCAG 2 cut(s) 42, 646
BspLI GGNNCC 3 cut(s) 571, 588, 595
BspPI GGATC 2 cut(s) 581, 594
BspT107I GGYRCC 1 cut(s) 593
BssECI CCNNGG 2 cut(s) 398, 419
BssMI GATC 1 cut(s) 586
BssT1I CCWWGG 2 cut(s) 398, 419
Bst2UI CCWGG 2 cut(s) 204, 591
BstDEI CTNAG 2 cut(s) 50, 633
BstF5I GGATG 2 cut(s) 151, 186
BstKTI GATC 1 cut(s) 589
BstMAI GTCTC 1 cut(s) 315
BstMBI GATC 1 cut(s) 586
BstNI CCWGG 2 cut(s) 204, 591
BstNSI RCATGY 1 cut(s) 128
BstSCI CCNGG 2 cut(s) 202, 589
BstSFI CTRYAG 2 cut(s) 111, 603
BstV1I GCAGC 1 cut(s) 483
BstV2I GAAGAC 1 cut(s) 663
BstX2I RGATCY 1 cut(s) 586
BstYI RGATCY 1 cut(s) 586
BsuRI GGCC 3 cut(s) 36, 48, 436
BtsCI GGATG 2 cut(s) 151, 186
Cfr13I GGNCC 3 cut(s) 34, 149, 570
Csp6I GTAC 1 cut(s) 498
CviAII CATG 4 cut(s) 125, 320, 368, 672
CviQI GTAC 1 cut(s) 498
DdeI CTNAG 2 cut(s) 50, 633
DpnI GATC 1 cut(s) 588
DpnII GATC 1 cut(s) 586
EciI GGCGGA 1 cut(s) 553
Eco130I CCWWGG 2 cut(s) 398, 419
Eco147I AGGCCT 2 cut(s) 48, 436
Eco32I GATATC 1 cut(s) 520
Eco47I GGWCC 2 cut(s) 149, 570
Eco57I CTGAAG 1 cut(s) 294
EcoO109I RGGNCCY 1 cut(s) 34
EcoRI GAATTC 1 cut(s) 637
EcoRII CCWGG 2 cut(s) 202, 589
EcoRV GATATC 1 cut(s) 520
EcoT14I CCWWGG 2 cut(s) 398, 419
EcoT22I ATGCAT 1 cut(s) 269
ErhI CCWWGG 2 cut(s) 398, 419
FaeI CATG 4 cut(s) 128, 323, 371, 675
FaiI YATR 6 cut(s) 126, 135, 137, 321, 369, 673
FalI AAGNNNNNCTT 4 cut(s) 23, 55, 421, 453
FaqI GGGAC 1 cut(s) 461
FatI CATG 4 cut(s) 124, 319, 367, 671
Fnu4HI GCNGC 1 cut(s) 472
FokI GGATG 2 cut(s) 158, 193
Fsp4HI GCNGC 1 cut(s) 472
FspBI CTAG 2 cut(s) 420, 441
GluI GCNGC 1 cut(s) 472
GsaI CCCAGC 1 cut(s) 145
HaeIII GGCC 3 cut(s) 36, 48, 436
HapII CCGG 2 cut(s) 286, 515
Hin1II CATG 4 cut(s) 128, 323, 371, 675
HinfI GANTC 4 cut(s) 278, 392, 503, 554
HpaII CCGG 2 cut(s) 286, 515
Hpy166II GTNNAC 1 cut(s) 669
Hpy188I TCNGA 6 cut(s) 231, 274, 315, 412, 457, 636
Hpy188III TCNNGA 3 cut(s) 345, 479, 647
Hpy8I GTNNAC 1 cut(s) 669
HpyAV CCTTC 4 cut(s) 25, 342, 426, 447
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 2 cut(s) 212, 267
HpyF3I CTNAG 2 cut(s) 50, 633
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 4 cut(s) 128, 323, 371, 675
Kzo9I GATC 1 cut(s) 586
Lsp1109I GCAGC 1 cut(s) 483
LweI GCATC 2 cut(s) 221, 276
MaeI CTAG 2 cut(s) 420, 441
MaeII ACGT 1 cut(s) 117
MalI GATC 1 cut(s) 588
MboI GATC 1 cut(s) 586
MboII GAAGA 3 cut(s) 287, 553, 668
MflI RGATCY 1 cut(s) 586
MluCI AATT 2 cut(s) 329, 637
MmeI TCCRAC 1 cut(s) 338
MnlI CCTC 7 cut(s) 47, 368, 438, 451, 461, 517, 643
Mph1103I ATGCAT 1 cut(s) 269
MroXI GAANNNNTTC 1 cut(s) 436
MseI TTAA 2 cut(s) 41, 224
MspI CCGG 2 cut(s) 286, 515
MspR9I CCNGG 2 cut(s) 204, 591
MvaI CCWGG 2 cut(s) 204, 591
NdeII GATC 1 cut(s) 586
NlaIII CATG 4 cut(s) 128, 323, 371, 675
NlaIV GGNNCC 3 cut(s) 571, 588, 595
NsiI ATGCAT 1 cut(s) 269
NspI RCATGY 1 cut(s) 128
PceI AGGCCT 2 cut(s) 48, 436
PdmI GAANNNNTTC 1 cut(s) 436
PfeI GAWTC 4 cut(s) 278, 392, 503, 554
PkrI GCNGC 1 cut(s) 473
Psp6I CCWGG 2 cut(s) 202, 589
PspFI CCCAGC 1 cut(s) 141
PspGI CCWGG 2 cut(s) 202, 589
PspN4I GGNNCC 3 cut(s) 571, 588, 595
PspPI GGNCC 3 cut(s) 34, 149, 570
PsrI GAACNNNNNNTAC 2 cut(s) 78, 110
PsuI RGATCY 1 cut(s) 586
RsaI GTAC 1 cut(s) 499
RsaNI GTAC 1 cut(s) 498
SaqAI TTAA 2 cut(s) 41, 224
SatI GCNGC 1 cut(s) 472
Sau3AI GATC 1 cut(s) 586
Sau96I GGNCC 3 cut(s) 34, 149, 570
ScrFI CCNGG 2 cut(s) 204, 591
SetI ASST 7 cut(s) 120, 179, 223, 261, 379, 421, 630
SfaNI GCATC 2 cut(s) 221, 276
SfcI CTRYAG 2 cut(s) 111, 603
SinI GGWCC 2 cut(s) 149, 570
Sse9I AATT 2 cut(s) 329, 637
SseBI AGGCCT 2 cut(s) 48, 436
SsiI CCGC 2 cut(s) 381, 538
SspMI CTAG 2 cut(s) 420, 441
StuI AGGCCT 2 cut(s) 48, 436
StyD4I CCNGG 2 cut(s) 202, 589
StyI CCWWGG 2 cut(s) 398, 419
TaiI ACGT 1 cut(s) 120
TaqI TCGA 2 cut(s) 5, 344
TaqII GACCGA 1 cut(s) 260
TasI AATT 2 cut(s) 329, 637
TfiI GAWTC 4 cut(s) 278, 392, 503, 554
Tru1I TTAA 2 cut(s) 41, 224
Tru9I TTAA 2 cut(s) 41, 224
TseI GCWGC 1 cut(s) 471
TspDTI ATGAA 2 cut(s) 44, 197
VpaK11BI GGWCC 2 cut(s) 149, 570
XapI RAATTY 1 cut(s) 637
XceI RCATGY 1 cut(s) 128
XmaJI CCTAGG 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 436
XspI CTAG 2 cut(s) 420, 441
Zsp2I ATGCAT 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.