AT2G26520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006082
Physical Location & Seq
Forward (+)
11279913 .. 11280996
1084 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G26520.1

Sequence Viewer

Length: 438 bp
ATGGCGTCAATGCCATTGTACTGGCAACCACCACCAGCTACAGAGGTTTCACAAGACTCATCCTCCGTCTCCTCCGCTGGAAATTCCACCATTGGTCCTTTTATCGCCGTCTTTATCGTTGTCACCGTTCTTTGTGTTCTCGCTAGTGTTATTGGACGGCTTTGCTCCGGCAAAACCATCTTAGGGTATGGAGATTACGATATGGAGAGATGGGCTGAGAGTAGATGTGGTTCTTGTATCGACGGTCACATTCATCCTCACCGGCCGTCTCCGTCGCCTACGCCTCCACCTCGTCAGCCTTTGCACCACACTTCCTCCGGCGTCTCCGCTGAATCTGAAGGACACGTGGCAGATCTAGATCATGAGACTGATGGAGAGAAACAAGACTCTTTAGACCATGAGCCTCCACAACAAACACCATCATCAGCTCATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

15.44

Weight (kDa)

5.13

Isoelectric Point (pI)

68.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 75, 327
AcoI YGGCCR 1 cut(s) 263
AcsI RAATTY 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 357
AcvI CACGTG 1 cut(s) 346
AcyI GRCGYC 2 cut(s) 5, 321
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 1 cut(s) 183
AflIII ACRYGT 1 cut(s) 343
AluBI AGCT 2 cut(s) 38, 428
AluI AGCT 2 cut(s) 38, 428
Alw26I GTCTC 4 cut(s) 73, 273, 328, 359
AoxI GGCC 1 cut(s) 263
ApoI RAATTY 1 cut(s) 82
AspS9I GGNCC 1 cut(s) 95
AsuHPI GGTGA 2 cut(s) 115, 251
AvaII GGWCC 1 cut(s) 95
BbrPI CACGTG 1 cut(s) 346
BccI CCATC 4 cut(s) 185, 204, 365, 427
BceAI ACGGC 3 cut(s) 92, 173, 250
BcoDI GTCTC 4 cut(s) 73, 273, 328, 359
BfaI CTAG 2 cut(s) 144, 356
BfmI CTRYAG 1 cut(s) 39
BglII AGATCT 1 cut(s) 352
Bme18I GGWCC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 95
BsaAI YACGTR 1 cut(s) 346
BsaBI GATNNNNATC 1 cut(s) 357
BsaHI GRCGYC 2 cut(s) 5, 321
BsaXI ACNNNNNCTCC 4 cut(s) 47, 77, 299, 329
Bsc4I CCNNNNNNNGG 1 cut(s) 183
Bse118I RCCGGY 1 cut(s) 261
Bse1I ACTGG 1 cut(s) 26
Bse8I GATNNNNATC 1 cut(s) 357
BseGI GGATG 2 cut(s) 59, 253
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 183
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 26
BseRI GAGGAG 1 cut(s) 61
BseX3I CGGCCG 1 cut(s) 263
Bsh1285I CGRYCG 1 cut(s) 266
BshFI GGCC 1 cut(s) 265
BsiEI CGRYCG 1 cut(s) 266
BsiSI CCGG 3 cut(s) 168, 262, 318
BslI CCNNNNNNNGG 1 cut(s) 183
BsmAI GTCTC 4 cut(s) 73, 273, 328, 359
BsmBI CGTCTC 3 cut(s) 73, 273, 328
BsnI GGCC 1 cut(s) 265
Bsp143I GATC 2 cut(s) 352, 358
BspACI CCGC 2 cut(s) 75, 327
BspANI GGCC 1 cut(s) 265
BspCNI CTCAG 1 cut(s) 208
BspHI TCATGA 1 cut(s) 361
BsrFI RCCGGY 1 cut(s) 261
BsrI ACTGG 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 261
BssMI GATC 2 cut(s) 352, 358
BssNI GRCGYC 2 cut(s) 5, 321
Bst4CI ACNGT 2 cut(s) 127, 245
BstACI GRCGYC 2 cut(s) 5, 321
BstBAI YACGTR 1 cut(s) 346
BstDEI CTNAG 2 cut(s) 181, 216
BstF5I GGATG 2 cut(s) 59, 253
BstKTI GATC 2 cut(s) 355, 361
BstMAI GTCTC 4 cut(s) 73, 273, 328, 359
BstMBI GATC 2 cut(s) 352, 358
BstMCI CGRYCG 1 cut(s) 266
BstSFI CTRYAG 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 352
BstXI CCANNNNNNTGG 1 cut(s) 21
BstYI RGATCY 1 cut(s) 352
BstZI CGGCCG 1 cut(s) 263
BsuRI GGCC 1 cut(s) 265
BtsCI GGATG 2 cut(s) 59, 253
CciI TCATGA 1 cut(s) 361
Cfr10I RCCGGY 1 cut(s) 261
Cfr13I GGNCC 1 cut(s) 95
CseI GACGC 1 cut(s) 310
Csp6I GTAC 1 cut(s) 19
CviAII CATG 2 cut(s) 362, 398
CviJI RGCY 7 cut(s) 38, 160, 215, 265, 298, 403, 428
CviKI_1 RGCY 7 cut(s) 38, 160, 215, 265, 298, 403, 428
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 2 cut(s) 181, 216
DpnI GATC 2 cut(s) 354, 360
DpnII GATC 2 cut(s) 352, 358
EaeI YGGCCR 1 cut(s) 263
EagI CGGCCG 1 cut(s) 263
EclXI CGGCCG 1 cut(s) 263
Eco47I GGWCC 1 cut(s) 95
Eco52I CGGCCG 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 357
Eco72I CACGTG 1 cut(s) 346
Esp3I CGTCTC 3 cut(s) 73, 273, 328
FaeI CATG 2 cut(s) 365, 401
FaiI YATR 4 cut(s) 189, 203, 363, 399
FatI CATG 2 cut(s) 361, 397
FokI GGATG 2 cut(s) 46, 240
FspBI CTAG 2 cut(s) 144, 356
HaeIII GGCC 1 cut(s) 265
HapII CCGG 3 cut(s) 168, 262, 318
HgaI GACGC 1 cut(s) 310
Hin1I GRCGYC 2 cut(s) 5, 321
Hin1II CATG 2 cut(s) 365, 401
HinfI GANTC 3 cut(s) 56, 332, 386
HpaII CCGG 3 cut(s) 168, 262, 318
HphI GGTGA 2 cut(s) 115, 251
Hpy188I TCNGA 1 cut(s) 337
Hpy188III TCNNGA 3 cut(s) 356, 362, 435
Hpy99I CGWCG 2 cut(s) 245, 277
HpyAV CCTTC 1 cut(s) 332
HpyCH4III ACNGT 2 cut(s) 127, 245
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 1 cut(s) 304
HpyF3I CTNAG 2 cut(s) 181, 216
HpySE526I ACGT 1 cut(s) 345
Hsp92I GRCGYC 2 cut(s) 5, 321
Hsp92II CATG 2 cut(s) 365, 401
Kzo9I GATC 2 cut(s) 352, 358
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 6 cut(s) 7, 48, 63, 181, 275, 331
MaeI CTAG 2 cut(s) 144, 356
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 2 cut(s) 121, 245
MalI GATC 2 cut(s) 354, 360
MboI GATC 2 cut(s) 352, 358
MflI RGATCY 1 cut(s) 352
MluCI AATT 1 cut(s) 82
MlyI GAGTC 2 cut(s) 50, 380
MnlI CCTC 8 cut(s) 37, 73, 82, 267, 294, 300, 325, 414
MspA1I CMGCKG 2 cut(s) 77, 329
MspI CCGG 3 cut(s) 168, 262, 318
NdeII GATC 2 cut(s) 352, 358
NlaIII CATG 2 cut(s) 365, 401
NmuCI GTSAC 2 cut(s) 121, 245
PagI TCATGA 1 cut(s) 361
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PfeI GAWTC 1 cut(s) 332
PleI GAGTC 2 cut(s) 50, 380
PmaCI CACGTG 1 cut(s) 346
PmlI CACGTG 1 cut(s) 346
PpsI GAGTC 2 cut(s) 50, 380
Ppu21I YACGTR 1 cut(s) 346
PspCI CACGTG 1 cut(s) 346
PspPI GGNCC 1 cut(s) 95
PsrI GAACNNNNNNTAC 2 cut(s) 214, 246
PsuI RGATCY 1 cut(s) 352
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
Sau3AI GATC 2 cut(s) 352, 358
Sau96I GGNCC 1 cut(s) 95
SchI GAGTC 2 cut(s) 50, 380
SetI ASST 5 cut(s) 40, 48, 292, 348, 430
SfcI CTRYAG 1 cut(s) 39
SinI GGWCC 1 cut(s) 95
Sse9I AATT 1 cut(s) 82
SsiI CCGC 2 cut(s) 75, 327
SspMI CTAG 2 cut(s) 144, 356
TaaI ACNGT 2 cut(s) 127, 245
TaiI ACGT 1 cut(s) 348
TaqI TCGA 1 cut(s) 240
TasI AATT 1 cut(s) 82
TatI WGTACW 1 cut(s) 18
TfiI GAWTC 1 cut(s) 332
TseFI GTSAC 2 cut(s) 121, 245
Tsp45I GTSAC 2 cut(s) 121, 245
TspDTI ATGAA 1 cut(s) 242
TspGWI ACGGA 2 cut(s) 55, 261
VpaK11BI GGWCC 1 cut(s) 95
XapI RAATTY 1 cut(s) 82
XbaI TCTAGA 1 cut(s) 355
XspI CTAG 2 cut(s) 144, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.