Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002978

Physical Location & Seq

Genomic Coordinates Forward (+)

78214481 .. 78217026

Gene Structure 2546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0585200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCTTCTTTCTCTTGTGCAGAGCACCATCACTTCCTCACCTTTCCAATCCTCCTCAACCTTCAAGATTCTGAGCCCCAATACTTCTTCTGATCTCCCCAAAAGTCTCTTTCTTGGCTTTGGAATTGAACCCACAACAAATGCCCTTCAAAGATTCCTCCTTTTCACCAAAAGCTCACACTTTGCCAAACCCAGAAACCCCTCCTCACTCTCCATCAATGCTTCTCTGATTGAAGCACCAGTCTTATGGGCTGGTAGGCTTTGCATCTTCTATGCTCTCTTGAAGACTGGTTTGGCTGGATCTCAAGCTAACCCACTTGTCTCAGATTTGGCTGAGAGTGAAGGTGGTGGTGTTGGTATTCAGTCTGATGATTTGGGGTTTTCCAAGTGGTTGAACAGCATACAGGGAAAACCAGTGAAAGACGCAGCTGATAGAAGGAAATTAGTCAGCAAATGGCATCCTACCACAAAGGGTACACTCAGAAGGAATTACAGGGTACCATCTAAATCTGAAGGGCGGCGTGTTCTAAAAGCCATTGCCTCTTTATTGTCAGATGATGATCACTTCGTAGATGCCAGCTCCCACAAGTTAAACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000413 GO:0003006 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010022 GO:0010050 GO:0010073 GO:0010582 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090567 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04217 ko04218 map04217 map04218

Pfam Domains

Protein Families

Pro_isomerase TPR_1 TPR_2

Protein Analysis

199

Amino Acids

21.57

Weight (kDa)

9.89

Isoelectric Point (pI)

54.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15790
fragaria_vesca	FvH4_1g15560 FvH4_1g15560 FvH4_1g15560 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830
malus_domestica	MD02G1167800.v1.1 MD05G1075200.v1.1 MD15G1280000.v1.1
prunus_persica	Prupe.7G137400_v2.0.a1 Prupe.8G116600_v2.0.a1 Prupe.8G116600_v2.0.a1
pyrus_communis	pycom02g13470 pycom05g06840
rosa_chinensis	RchiOBHm_Chr2g0104891 RchiOBHm_Chr6g0259041
rosa_laevigata	RLG00000014561 RLG00000017365
rosa_multiflora	Rmu_sc0003419.1_g000006 Rmu_ssc0000050.1_g000113
rosa_roxburghii	Rroxscaffold_2G00138700 Rroxscaffold_7G00206290 Rroxscaffold_7G00206440
rosa_rugosa	Rorug02G0123600 Rorug02G0123700 Rorug05G0585100 Rorug05G0585200
rosa_samantha	Rh2AG173900 Rh2BG181500 Rh2CG178800 Rh2DG180200 Rh6AG101400
rosa_wichuraiana	Rw2G013680 Rw6G008820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	496
AccB1I	GGYRCC	1 cut(s)	496
AciI	CCGC	1 cut(s)	517
AclWI	GGATC	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	531
AfaI	GTAC	2 cut(s)	475, 498
AgsI	TTSAA	6 cut(s)	64, 128, 149, 233, 283, 394
AjuI	GAANNNNNNNTTGG	2 cut(s)	275, 307
AluBI	AGCT	4 cut(s)	174, 308, 428, 579
AluI	AGCT	4 cut(s)	174, 308, 428, 579
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	2 cut(s)	110, 325
AlwI	GGATC	1 cut(s)	307
ApeKI	GCWGC	1 cut(s)	425
Asp718I	GGTACC	1 cut(s)	496
AsuHPI	GGTGA	2 cut(s)	30, 157
BanI	GGYRCC	1 cut(s)	496
BanII	GRGCYC	1 cut(s)	77
BbsI	GAAGAC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	437
BccI	CCATC	3 cut(s)	35, 221, 508
BclI	TGATCA	1 cut(s)	559
BcoDI	GTCTC	2 cut(s)	110, 325
BisI	GCNGC	2 cut(s)	426, 518
BlsI	GCNGC	2 cut(s)	427, 519
BmiI	GGNNCC	1 cut(s)	498
BmsI	GCATC	3 cut(s)	273, 466, 562
BpiI	GAAGAC	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	288
BsaBI	GATNNNNATC	1 cut(s)	558
Bse1I	ACTGG	3 cut(s)	239, 292, 413
Bse3DI	GCAATG	1 cut(s)	534
Bse8I	GATNNNNATC	1 cut(s)	558
BseGI	GGATG	1 cut(s)	457
BseJI	GATNNNNATC	1 cut(s)	558
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	4 cut(s)	62, 324, 336, 493
BseNI	ACTGG	3 cut(s)	239, 292, 413
BseRI	GAGGAG	2 cut(s)	43, 193
BseXI	GCAGC	1 cut(s)	437
BsgI	GTGCAG	1 cut(s)	38
BshNI	GGYRCC	1 cut(s)	496
BsiHKAI	GWGCWC	1 cut(s)	26
BsmAI	GTCTC	2 cut(s)	110, 325
Bsp1286I	GDGCHC	2 cut(s)	26, 77
Bsp143I	GATC	3 cut(s)	91, 299, 559
BspACI	CCGC	1 cut(s)	517
BspCNI	CTCAG	4 cut(s)	63, 325, 335, 492
BspLI	GGNNCC	1 cut(s)	498
BspPI	GGATC	1 cut(s)	307
BspT107I	GGYRCC	1 cut(s)	496
BsrDI	GCAATG	1 cut(s)	534
BsrI	ACTGG	3 cut(s)	239, 292, 413
BssMI	GATC	3 cut(s)	91, 299, 559
BstC8I	GCNNGC	1 cut(s)	577
BstDEI	CTNAG	4 cut(s)	71, 322, 333, 479
BstF5I	GGATG	1 cut(s)	457
BstKTI	GATC	3 cut(s)	94, 302, 562
BstMAI	GTCTC	2 cut(s)	110, 325
BstMBI	GATC	3 cut(s)	91, 299, 559
BstV1I	GCAGC	1 cut(s)	437
BstV2I	GAAGAC	1 cut(s)	290
BstX2I	RGATCY	1 cut(s)	299
BstXI	CCANNNNNNTGG	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	457
BtsIMutI	CAGTG	1 cut(s)	420
Cac8I	GCNNGC	1 cut(s)	577
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	2 cut(s)	474, 497
CviQI	GTAC	2 cut(s)	474, 497
DdeI	CTNAG	4 cut(s)	71, 322, 333, 479
DpnI	GATC	3 cut(s)	93, 301, 561
DpnII	GATC	3 cut(s)	91, 299, 559
Eco24I	GRGCYC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	531
EcoT38I	GRGCYC	1 cut(s)	77
FaiI	YATR	3 cut(s)	247, 273, 401
FbaI	TGATCA	1 cut(s)	559
Fnu4HI	GCNGC	2 cut(s)	426, 518
FokI	GGATG	1 cut(s)	444
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	2 cut(s)	426, 518
GluI	GCNGC	2 cut(s)	426, 518
HgaI	GACGC	1 cut(s)	431
HinfI	GANTC	2 cut(s)	67, 153
HphI	GGTGA	2 cut(s)	30, 157
Hpy166II	GTNNAC	1 cut(s)	476
Hpy188I	TCNGA	8 cut(s)	72, 91, 228, 325, 367, 482, 511, 553
Hpy188III	TCNNGA	2 cut(s)	64, 280
Hpy8I	GTNNAC	1 cut(s)	476
HpyAV	CCTTC	6 cut(s)	70, 155, 335, 429, 477, 506
HpyCH4V	TGCA	2 cut(s)	19, 264
HpyF3I	CTNAG	4 cut(s)	71, 322, 333, 479
KpnI	GGTACC	1 cut(s)	500
Ksp22I	TGATCA	1 cut(s)	559
Kzo9I	GATC	3 cut(s)	91, 299, 559
LmnI	GCTCC	1 cut(s)	584
LpnPI	CCDG	9 cut(s)	205, 237, 252, 273, 282, 389, 426, 478, 589
Lsp1109I	GCAGC	1 cut(s)	437
LweI	GCATC	3 cut(s)	273, 466, 562
MalI	GATC	3 cut(s)	93, 301, 561
MboI	GATC	3 cut(s)	91, 299, 559
MboII	GAAGA	3 cut(s)	78, 259, 295
MflI	RGATCY	1 cut(s)	299
MhlI	GDGCHC	2 cut(s)	26, 77
MluCI	AATT	3 cut(s)	123, 440, 487
MnlI	CCTC	7 cut(s)	46, 61, 64, 167, 211, 214, 550
MseI	TTAA	2 cut(s)	590, 598
MspA1I	CMGCKG	1 cut(s)	428
NdeII	GATC	3 cut(s)	91, 299, 559
NlaIV	GGNNCC	1 cut(s)	498
PfeI	GAWTC	2 cut(s)	67, 153
PkrI	GCNGC	2 cut(s)	427, 519
PspN4I	GGNNCC	1 cut(s)	498
PsuI	RGATCY	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	428
RsaI	GTAC	2 cut(s)	475, 498
RsaNI	GTAC	2 cut(s)	474, 497
SaqAI	TTAA	2 cut(s)	590, 598
SatI	GCNGC	2 cut(s)	426, 518
Sau3AI	GATC	3 cut(s)	91, 299, 559
SduI	GDGCHC	2 cut(s)	26, 77
SetI	ASST	7 cut(s)	43, 62, 176, 310, 346, 430, 581
SfaNI	GCATC	3 cut(s)	273, 466, 562
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
Sse9I	AATT	3 cut(s)	123, 440, 487
SsiI	CCGC	1 cut(s)	517
TasI	AATT	3 cut(s)	123, 440, 487
TauI	GCSGC	1 cut(s)	520
TfiI	GAWTC	2 cut(s)	67, 153
Tru1I	TTAA	2 cut(s)	590, 598
Tru9I	TTAA	2 cut(s)	590, 598
TscAI	CASTG	1 cut(s)	420
TseI	GCWGC	1 cut(s)	425
TspRI	CASTG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.