Rw2G013680

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0002978
Physical Location & Seq
Forward (+)
14821895 .. 14825687
3793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G013680.1

Sequence Viewer

Length: 1095 bp
ATGGTGAGACCAAGATGTTACCTTGACATAACCATAGGAGGAGAACCGGAAGGAAGAATCGTCATTGAGCTCTACAACGACGTCGTCCCGAAAACCGCGGAGAATTTCAGAGCGCTGTGCACCGGTGAGAAGGGCATTGCTCCCAACACCGCCGTCCCTCTTCATTTCAAGGGGGTTGGTTTCCACCGCATTATCAAAGGGTTTATGATACAAGGGGGAGACATCTCAGCTGGGAATGGGAGCGGGGGAGAGTCGATTTACGGCTCGAAATTCGAGGATGAGAATTTCGAGATTAAGCATGAGAGGAAGGGGATGGTGTCCATGGCGAATACTGGGCCGGATAGTAATGGCTCACAGTTCTTTATTACTACTACTAGGACTCCCCATCTGGATGGGAAGCATGTTGTGTTTGGGAGGGTGATTAAGGGAATGGGGGTGGCCAGGTCCATTGAGCATGTGAGTACTAAAGATGATGGGGAGCATTTTCCCACTCAGGAGGTTTTGATTGCGGATTGTGGGGAACTTGCTGAGGGGGCTGATGATGGGGTGTGTAATTTTTTTAAGGATGGGGATGTTTATCCTGATTGGCCCGTTGATCTTGATGCGAAACATGAGCAGATATCTTGGTGGGTTAGTGCTGTGAATGTGATTAAGGCACTTGGAAATGAGCAGTTCAAGAAGCAAGACTATAAGATGGCCCTGAGAAAGTATCGCAAGGCTTTGCGCTATTTGGATCTGTGCTGGGAGTTGGAAGATATCAATGAAGAGAACAGCTCCTCTCTGCGGCAGACAAAGTCTCAGATATTTACTAATAGCTCAGCTTGTAGATTGAAATTAGGAGACCTAGAAGGAGCATTGTTGGATACAGACTTTGCATTGCGTGATTGGGAGGACAATGTGAAGGCGTTGTTTCGCCAAGGCCAGACATATATGGCACTAAATGACATCGACTCTGCGGTTGAAAGCTTCAAGAAGGCACTGGAATTGGAACCAAATGATGGGGGAATTAAGAAAGAGCTTCTGGTTGCTAAAAAGAAGGTAGCTGATAGGAGTGAGAGAGAAAAGAGAGCATACTCTCGAATGTTTAACCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04217 ko04218 map04217 map04218
Pfam Domains
Protein Families
Pro_isomerase TPR_1 TPR_2

Protein Analysis

364

Amino Acids

40.77

Weight (kDa)

5.63

Isoelectric Point (pI)

25.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 7 - 173 1.2e-49 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
TPR_1 PF00515 300 - 333 1.9e-08 Tetratricopeptide repeat
TPR_2 PF07719 301 - 333 1.2e-07 Tetratricopeptide repeat
TPR_8 PF13181 301 - 333 1.7e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 84
AccB7I CCANNNNNTGG 1 cut(s) 998
AccBSI CCGCTC 1 cut(s) 243
AccII CGCG 1 cut(s) 98
AciI CCGC 8 cut(s) 96, 98, 150, 187, 243, 509, 784, 956
AclWI GGATC 1 cut(s) 741
AcoI YGGCCR 1 cut(s) 438
AcsI RAATTY 3 cut(s) 103, 269, 283
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 1 cut(s) 463
AfeI AGCGCT 1 cut(s) 114
AfiI CCNNNNNNNGG 2 cut(s) 783, 998
AgeI ACCGGT 1 cut(s) 122
AgsI TTSAA 5 cut(s) 169, 676, 832, 962, 970
AjnI CCWGG 1 cut(s) 440
AluBI AGCT 8 cut(s) 70, 230, 774, 816, 821, 966, 1018, 1043
AluI AGCT 8 cut(s) 70, 230, 774, 816, 821, 966, 1018, 1043
Alw21I GWGCWC 2 cut(s) 72, 122
Alw26I GTCTC 3 cut(s) 213, 801, 834
Alw44I GTGCAC 1 cut(s) 118
AlwI GGATC 1 cut(s) 741
Aor51HI AGCGCT 1 cut(s) 114
AoxI GGCC 5 cut(s) 335, 438, 587, 696, 919
ApaLI GTGCAC 1 cut(s) 118
ApoI RAATTY 3 cut(s) 103, 269, 283
AsiGI ACCGGT 1 cut(s) 122
AspLEI GCGC 2 cut(s) 115, 726
AspS9I GGNCC 4 cut(s) 335, 444, 588, 697
AsuHPI GGTGA 3 cut(s) 16, 137, 430
AvaII GGWCC 1 cut(s) 444
BaeGI GKGCMC 1 cut(s) 122
BalI TGGCCA 1 cut(s) 440
BanII GRGCYC 1 cut(s) 72
Bbv12I GWGCWC 2 cut(s) 72, 122
BbvCI CCTCAGC 1 cut(s) 528
BccI CCATC 8 cut(s) 307, 386, 393, 467, 536, 560, 688, 992
BceAI ACGGC 2 cut(s) 137, 277
BciT130I CCWGG 1 cut(s) 442
BciVI GTATCC 1 cut(s) 856
BcoDI GTCTC 3 cut(s) 213, 801, 834
BfaI CTAG 2 cut(s) 375, 845
BfoI RGCGCY 1 cut(s) 116
BfuI GTATCC 1 cut(s) 856
BisI GCNGC 1 cut(s) 785
BlpI GCTNAGC 1 cut(s) 817
BlsI GCNGC 1 cut(s) 786
BmcAI AGTACT 1 cut(s) 463
Bme1390I CCNGG 1 cut(s) 442
Bme18I GGWCC 1 cut(s) 444
BmgT120I GGNCC 4 cut(s) 335, 444, 588, 697
BmiI GGNNCC 1 cut(s) 990
BmrFI CCNGG 1 cut(s) 442
BmrI ACTGGG 1 cut(s) 342
BmsI GCATC 1 cut(s) 592
BmuI ACTGGG 1 cut(s) 342
BplI GAGNNNNNCTC 2 cut(s) 758, 790
Bpu10I CCTNAGC 1 cut(s) 528
Bpu1102I GCTNAGC 1 cut(s) 817
BsaBI GATNNNNATC 1 cut(s) 576
BsaHI GRCGYC 1 cut(s) 81
BsaI GGTCTC 1 cut(s) 834
BsaJI CCNNGG 3 cut(s) 96, 321, 916
BsaWI WCCGGW 2 cut(s) 46, 122
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bsc4I CCNNNNNNNGG 2 cut(s) 783, 998
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 2 cut(s) 337, 984
Bse3DI GCAATG 2 cut(s) 135, 875
Bse8I GATNNNNATC 1 cut(s) 576
BseBI CCWGG 1 cut(s) 442
BseDI CCNNGG 3 cut(s) 96, 321, 916
BseGI GGATG 5 cut(s) 283, 318, 397, 571, 577
BseJI GATNNNNATC 1 cut(s) 576
BseLI CCNNNNNNNGG 2 cut(s) 783, 998
BseMI GCAATG 2 cut(s) 135, 875
BseMII CTCAG 6 cut(s) 240, 506, 519, 692, 812, 831
BseNI ACTGG 2 cut(s) 337, 984
BseRI GAGGAG 2 cut(s) 54, 766
BseSI GKGCMC 1 cut(s) 122
BseYI CCCAGC 2 cut(s) 230, 741
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 5 cut(s) 337, 440, 589, 698, 921
BshTI ACCGGT 1 cut(s) 122
BsiHKAI GWGCWC 2 cut(s) 72, 122
BsiSI CCGG 3 cut(s) 47, 123, 338
BslFI GGGAC 2 cut(s) 71, 140
BslI CCNNNNNNNGG 2 cut(s) 783, 998
BsmAI GTCTC 3 cut(s) 213, 801, 834
BsmFI GGGAC 2 cut(s) 71, 140
BsnI GGCC 5 cut(s) 337, 440, 589, 698, 921
Bso31I GGTCTC 1 cut(s) 834
Bsp1286I GDGCHC 2 cut(s) 72, 122
Bsp143I GATC 2 cut(s) 595, 733
Bsp1720I GCTNAGC 1 cut(s) 817
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 8 cut(s) 96, 98, 150, 187, 243, 509, 784, 956
BspANI GGCC 5 cut(s) 337, 440, 589, 698, 921
BspCNI CTCAG 6 cut(s) 239, 505, 520, 693, 811, 830
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 990
BspPI GGATC 1 cut(s) 741
BspTNI GGTCTC 1 cut(s) 834
BsrBI CCGCTC 1 cut(s) 243
BsrDI GCAATG 2 cut(s) 135, 875
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 2 cut(s) 337, 984
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 3 cut(s) 96, 321, 916
BssMI GATC 2 cut(s) 595, 733
BssNI GRCGYC 1 cut(s) 81
BssT1I CCWWGG 2 cut(s) 321, 916
Bst2UI CCWGG 1 cut(s) 442
Bst4CI ACNGT 1 cut(s) 357
Bst6I CTCTTC 2 cut(s) 165, 759
BstACI GRCGYC 1 cut(s) 81
BstDEI CTNAG 6 cut(s) 226, 492, 528, 701, 798, 817
BstDSI CCRYGG 2 cut(s) 96, 321
BstF5I GGATG 5 cut(s) 283, 318, 397, 571, 577
BstFNI CGCG 1 cut(s) 98
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 2 cut(s) 115, 726
BstKTI GATC 2 cut(s) 598, 736
BstMAI GTCTC 3 cut(s) 213, 801, 834
BstMBI GATC 2 cut(s) 595, 733
BstMWI GCNNNNNNNGC 1 cut(s) 533
BstNI CCWGG 1 cut(s) 442
BstNSI RCATGY 2 cut(s) 404, 458
BstSCI CCNGG 1 cut(s) 440
BstSLI GKGCMC 1 cut(s) 122
BstUI CGCG 1 cut(s) 98
BstX2I RGATCY 1 cut(s) 733
BstXI CCANNNNNNTGG 1 cut(s) 392
BstYI RGATCY 1 cut(s) 733
BsuI GTATCC 1 cut(s) 856
BsuRI GGCC 5 cut(s) 337, 440, 589, 698, 921
BtgI CCRYGG 2 cut(s) 96, 321
BtsCI GGATG 5 cut(s) 283, 318, 397, 571, 577
BtsIMutI CAGTG 1 cut(s) 977
CfoI GCGC 2 cut(s) 115, 726
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 4 cut(s) 335, 444, 588, 697
Cfr42I CCGCGG 1 cut(s) 99
Csp6I GTAC 1 cut(s) 462
CspAI ACCGGT 1 cut(s) 122
CviAII CATG 5 cut(s) 299, 322, 401, 455, 611
CviQI GTAC 1 cut(s) 462
DdeI CTNAG 6 cut(s) 226, 492, 528, 701, 798, 817
DpnI GATC 2 cut(s) 597, 735
DpnII GATC 2 cut(s) 595, 733
EaeI YGGCCR 1 cut(s) 438
Eam1104I CTCTTC 2 cut(s) 165, 759
EarI CTCTTC 2 cut(s) 165, 759
Ecl136II GAGCTC 1 cut(s) 70
Eco130I CCWWGG 2 cut(s) 321, 916
Eco24I GRGCYC 1 cut(s) 72
Eco31I GGTCTC 1 cut(s) 834
Eco32I GATATC 2 cut(s) 621, 757
Eco47I GGWCC 1 cut(s) 444
Eco47III AGCGCT 1 cut(s) 114
Eco53kI GAGCTC 1 cut(s) 70
EcoICRI GAGCTC 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 440
EcoRV GATATC 2 cut(s) 621, 757
EcoT14I CCWWGG 2 cut(s) 321, 916
EcoT38I GRGCYC 1 cut(s) 72
ErhI CCWWGG 2 cut(s) 321, 916
FaeI CATG 5 cut(s) 302, 325, 404, 458, 614
FaqI GGGAC 2 cut(s) 71, 140
FatI CATG 5 cut(s) 298, 321, 400, 454, 610
FauI CCCGC 1 cut(s) 236
Fnu4HI GCNGC 1 cut(s) 785
FokI GGATG 5 cut(s) 290, 325, 404, 578, 584
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 785
FspBI CTAG 2 cut(s) 375, 845
GlaI GCGC 2 cut(s) 114, 725
GluI GCNGC 1 cut(s) 785
GsaI CCCAGC 2 cut(s) 234, 745
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 5 cut(s) 337, 440, 589, 698, 921
HapII CCGG 3 cut(s) 47, 123, 338
HhaI GCGC 2 cut(s) 115, 726
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 5 cut(s) 302, 325, 404, 458, 614
Hin6I GCGC 2 cut(s) 113, 724
HinP1I GCGC 2 cut(s) 113, 724
HindIII AAGCTT 1 cut(s) 964
HinfI GANTC 4 cut(s) 57, 251, 379, 950
HpaII CCGG 3 cut(s) 47, 123, 338
HphI GGTGA 3 cut(s) 16, 137, 430
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 2 cut(s) 110, 801
Hpy188III TCNNGA 9 cut(s) 88, 289, 389, 494, 581, 599, 676, 970, 1077
Hpy8I GTNNAC 1 cut(s) 120
Hpy99I CGWCG 2 cut(s) 83, 86
HpyAV CCTTC 7 cut(s) 44, 124, 301, 842, 895, 967, 1030
HpyCH4III ACNGT 1 cut(s) 357
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 2 cut(s) 120, 875
HpyF10VI GCNNNNNNNGC 1 cut(s) 533
HpyF3I CTNAG 6 cut(s) 226, 492, 528, 701, 798, 817
HpySE526I ACGT 1 cut(s) 81
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 5 cut(s) 302, 325, 404, 458, 614
HspAI GCGC 2 cut(s) 113, 724
KspI CCGCGG 1 cut(s) 99
Kzo9I GATC 2 cut(s) 595, 733
LmnI GCTCC 5 cut(s) 145, 240, 478, 779, 851
LweI GCATC 1 cut(s) 592
MaeI CTAG 2 cut(s) 375, 845
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 17
MalI GATC 2 cut(s) 597, 735
MbiI CCGCTC 1 cut(s) 243
MboI GATC 2 cut(s) 595, 733
MboII GAAGA 4 cut(s) 66, 152, 764, 776
MflI RGATCY 1 cut(s) 733
MhlI GDGCHC 2 cut(s) 72, 122
MlsI TGGCCA 1 cut(s) 440
MluCI AATT 7 cut(s) 103, 269, 283, 553, 833, 983, 1005
MluNI TGGCCA 1 cut(s) 440
MlyI GAGTC 3 cut(s) 260, 373, 944
MmeI TCCRAC 2 cut(s) 729, 840
MnlI CCTC 9 cut(s) 32, 168, 268, 297, 408, 490, 523, 787, 883
Mox20I TGGCCA 1 cut(s) 440
MscI TGGCCA 1 cut(s) 440
MseI TTAA 6 cut(s) 294, 423, 561, 651, 1008, 1086
MslI CAYNNNNRTG 1 cut(s) 390
Msp20I TGGCCA 1 cut(s) 440
MspA1I CMGCKG 2 cut(s) 98, 230
MspI CCGG 3 cut(s) 47, 123, 338
MspR9I CCNGG 1 cut(s) 442
MvaI CCWGG 1 cut(s) 442
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 533
NcoI CCATGG 1 cut(s) 321
NdeII GATC 2 cut(s) 595, 733
NlaIII CATG 5 cut(s) 302, 325, 404, 458, 614
NlaIV GGNNCC 1 cut(s) 990
NspI RCATGY 2 cut(s) 404, 458
PfeI GAWTC 1 cut(s) 57
PflFI GACNNNGTC 2 cut(s) 83, 793
PflMI CCANNNNNTGG 1 cut(s) 998
PinAI ACCGGT 1 cut(s) 122
PkrI GCNGC 1 cut(s) 786
PleI GAGTC 3 cut(s) 259, 373, 944
PpsI GAGTC 3 cut(s) 259, 373, 944
Psp124BI GAGCTC 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 440
PspFI CCCAGC 2 cut(s) 230, 741
PspGI CCWGG 1 cut(s) 440
PspN4I GGNNCC 1 cut(s) 990
PspPI GGNCC 4 cut(s) 335, 444, 588, 697
PsuI RGATCY 1 cut(s) 733
PsyI GACNNNGTC 2 cut(s) 83, 793
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 1 cut(s) 463
RsaNI GTAC 1 cut(s) 462
RseI CAYNNNNRTG 1 cut(s) 390
SacI GAGCTC 1 cut(s) 72
SacII CCGCGG 1 cut(s) 99
SaqAI TTAA 6 cut(s) 294, 423, 561, 651, 1008, 1086
SatI GCNGC 1 cut(s) 785
Sau3AI GATC 2 cut(s) 595, 733
Sau96I GGNCC 4 cut(s) 335, 444, 588, 697
ScaI AGTACT 1 cut(s) 463
SchI GAGTC 3 cut(s) 260, 373, 944
ScrFI CCNGG 1 cut(s) 442
SduI GDGCHC 2 cut(s) 72, 122
SfaNI GCATC 1 cut(s) 592
Sfr303I CCGCGG 1 cut(s) 99
SgrAI CRCCGGYG 1 cut(s) 122
SgrBI CCGCGG 1 cut(s) 99
SinI GGWCC 1 cut(s) 444
SmiMI CAYNNNNRTG 1 cut(s) 390
Sse9I AATT 7 cut(s) 103, 269, 283, 553, 833, 983, 1005
SsiI CCGC 8 cut(s) 96, 98, 150, 187, 243, 509, 784, 956
SspMI CTAG 2 cut(s) 375, 845
SstI GAGCTC 1 cut(s) 72
StyD4I CCNGG 1 cut(s) 440
StyI CCWWGG 2 cut(s) 321, 916
TaaI ACNGT 1 cut(s) 357
TaiI ACGT 1 cut(s) 84
TaqI TCGA 6 cut(s) 254, 266, 273, 288, 948, 1078
TasI AATT 7 cut(s) 103, 269, 283, 553, 833, 983, 1005
TatI WGTACW 1 cut(s) 461
TauI GCSGC 1 cut(s) 787
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 6 cut(s) 294, 423, 561, 651, 1008, 1086
Tru9I TTAA 6 cut(s) 294, 423, 561, 651, 1008, 1086
TscAI CASTG 1 cut(s) 984
TspDTI ATGAA 2 cut(s) 152, 777
TspRI CASTG 1 cut(s) 984
Tth111I GACNNNGTC 2 cut(s) 83, 793
Van91I CCANNNNNTGG 1 cut(s) 998
VneI GTGCAC 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 444
XapI RAATTY 3 cut(s) 103, 269, 283
XceI RCATGY 2 cut(s) 404, 458
XspI CTAG 2 cut(s) 375, 845
ZraI GACGTC 1 cut(s) 82
ZrmI AGTACT 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.