Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002978

Physical Location & Seq

Genomic Coordinates Reverse (-)

56213266 .. 56216894

Gene Structure 3629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00206440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGGGGAGAGGCCACGGTGCTTTCTGGACATTAGCATAGGAGGAGAGCTTGAAGGACGGATAGTGATCGAGCTTTACGACCATGTGGTGCCCAAAACGGCAGAGAATTTCAGAGCTCTCTGTACTGGTGAGAAAGGCATTGGTCCCAACACTGGCGTCCCCCTCCACTACAAGGGAAACCATTTTCATCGTGTTGTCAAAGGCTTCATGATACAAGGGGGTGATATTTCTGCTGGAGATGGCACGGGGGGAGAGTCTATCTATGGGCTGAAATTTGAAGATGAAAATTTTGAATTGAAACATGAAAGGAAAGGCATGTTATCCATGGCCAATGCTGGTCCGAACACCAATGGGTCTCAGTTTTTTATCACAACAACTCGCACTGCTCATTTAGATGGGAAACATGTGGTGTTTGGGAAGGTAGTGAAAGGCATGGGAGTGGTTCGTTCAATAGAGCACATTTCCACCGGTGAGGGCGGTGATTCTCCGTCTGTTGATGTTGTTATTGTGGATTGTGGAGAAATTCCTGAGGGGGCTGATGATGGAATATCTAATTTATTCAAAGATGGTGACACTTATCCTGATTGGCCAGCCGACTTAGATAACAGTCCTGATGAGCTTGCTTGGTGGATGACTTCTGTAGATTCAATCAAGGCTTTTGGTAATGAATATTTCAAGAAACAAGACTACAAGATGGCTCTCAGAAAGTATCGGAAATCTTTGCGCTATCTCGATATTTGTTGGGAGAAAGATGGAATTGATGAAGAGAAGAGTTCAAGTTTGAGAAAAACCAAGTCACAGATTTTCACTAACAGCTCTGCTTGTAAATTGAAATTGGGGGACCTGAAAGGAGCACTGTTAGACACTGACTTTGCAATGAGGGATGGAGAAAATAATGTTAAGGCTTTGTTTCGACAAGGTCAGGCATACATAGCACTTAATGATATTGATGCTGCAGTTGAGAGCTTCAAAAAGGCATTGGATTTGGAGCCCACTGATGCTGGAATAAAAAAGGAGCTTGCTGCTGCTAAGAAGAAGATTTCTAGTAGGCGTGATCAGGAGAAGAAGGCCTACAGCAAGATGTTTCAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000413 GO:0003006 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010022 GO:0010050 GO:0010073 GO:0010582 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090567 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04217 ko04218 map04217 map04218

Pfam Domains

Protein Families

Pro_isomerase TPR_1 TPR_2

Protein Analysis

364

Amino Acids

40.26

Weight (kDa)

6.12

Isoelectric Point (pI)

24.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	9 - 173	7.7e-50	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
TPR_1	PF00515	300 - 333	1.7e-07	Tetratricopeptide repeat
TPR_2	PF07719	301 - 333	6.3e-07	Tetratricopeptide repeat
TPR_8	PF13181	301 - 332	4.5e-07	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15790
fragaria_vesca	FvH4_1g15560 FvH4_1g15560 FvH4_1g15560 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830
malus_domestica	MD02G1167800.v1.1 MD05G1075200.v1.1 MD15G1280000.v1.1
prunus_persica	Prupe.7G137400_v2.0.a1 Prupe.8G116600_v2.0.a1 Prupe.8G116600_v2.0.a1
pyrus_communis	pycom02g13470 pycom05g06840
rosa_chinensis	RchiOBHm_Chr2g0104891 RchiOBHm_Chr6g0259041
rosa_laevigata	RLG00000014561 RLG00000017365
rosa_multiflora	Rmu_sc0003419.1_g000006 Rmu_ssc0000050.1_g000113
rosa_roxburghii	Rroxscaffold_2G00138700 Rroxscaffold_7G00206290 Rroxscaffold_7G00206440
rosa_rugosa	Rorug02G0123600 Rorug02G0123700 Rorug05G0585100 Rorug05G0585200
rosa_samantha	Rh2AG173900 Rh2BG181500 Rh2CG178800 Rh2DG180200 Rh6AG101400
rosa_wichuraiana	Rw2G013680 Rw6G008820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	88
AciI	CCGC	1 cut(s)	477
AcoI	YGGCCR	2 cut(s)	327, 587
AcsI	RAATTY	4 cut(s)	106, 272, 286, 522
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	2 cut(s)	152, 172
AflIII	ACRYGT	1 cut(s)	403
AgeI	ACCGGT	1 cut(s)	467
AluBI	AGCT	7 cut(s)	49, 73, 116, 619, 816, 966, 1018
AluI	AGCT	7 cut(s)	49, 73, 116, 619, 816, 966, 1018
Alw21I	GWGCWC	3 cut(s)	118, 459, 856
Alw26I	GTCTC	1 cut(s)	360
AoxI	GGCC	4 cut(s)	11, 327, 587, 1068
ApeKI	GCWGC	3 cut(s)	953, 1022, 1025
ApoI	RAATTY	4 cut(s)	106, 272, 286, 522
ArsI	GACNNNNNNTTYG	2 cut(s)	854, 886
AsiGI	ACCGGT	1 cut(s)	467
AspLEI	GCGC	1 cut(s)	726
AspS9I	GGNCC	3 cut(s)	143, 338, 841
AsuHPI	GGTGA	5 cut(s)	140, 233, 482, 491, 581
AvaII	GGWCC	3 cut(s)	143, 338, 841
AxyI	CCTNAGG	1 cut(s)	528
BaeGI	GKGCMC	1 cut(s)	93
BalI	TGGCCA	2 cut(s)	329, 589
BanI	GGYRCC	1 cut(s)	88
BanII	GRGCYC	2 cut(s)	118, 993
BarI	GAAGNNNNNNTAC	2 cut(s)	1055, 1087
Bbv12I	GWGCWC	3 cut(s)	118, 459, 856
BbvI	GCAGC	3 cut(s)	940, 1009, 1012
BccI	CCATC	7 cut(s)	233, 389, 536, 560, 688, 746, 878
BceAI	ACGGC	1 cut(s)	114
BclI	TGATCA	1 cut(s)	1054
BcoDI	GTCTC	1 cut(s)	360
BfaI	CTAG	1 cut(s)	1044
BfmI	CTRYAG	3 cut(s)	639, 954, 1072
BisI	GCNGC	3 cut(s)	954, 1023, 1026
BlsI	GCNGC	3 cut(s)	955, 1024, 1027
Bme18I	GGWCC	3 cut(s)	143, 338, 841
BmgT120I	GGNCC	3 cut(s)	143, 338, 841
BmiI	GGNNCC	4 cut(s)	90, 145, 842, 990
BmsI	GCATC	2 cut(s)	940, 988
BpmI	CTGGAG	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	65
BsaHI	GRCGYC	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	14, 324
BsaWI	WCCGGW	1 cut(s)	467
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 172
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	2 cut(s)	130, 157
Bse21I	CCTNAGG	1 cut(s)	528
Bse3DI	GCAATG	1 cut(s)	882
Bse8I	GATNNNNATC	1 cut(s)	65
BseDI	CCNNGG	2 cut(s)	14, 324
BseGI	GGATG	2 cut(s)	636, 889
BseJI	GATNNNNATC	1 cut(s)	65
BseLI	CCNNNNNNNGG	2 cut(s)	152, 172
BseMI	GCAATG	1 cut(s)	882
BseMII	CTCAG	3 cut(s)	371, 519, 715
BseNI	ACTGG	2 cut(s)	130, 157
BseRI	GAGGAG	1 cut(s)	57
BseSI	GKGCMC	1 cut(s)	93
BseXI	GCAGC	3 cut(s)	940, 1009, 1012
BshFI	GGCC	4 cut(s)	13, 329, 589, 1070
BshNI	GGYRCC	1 cut(s)	88
BshTI	ACCGGT	1 cut(s)	467
BsiHKAI	GWGCWC	3 cut(s)	118, 459, 856
BsiSI	CCGG	1 cut(s)	468
BslFI	GGGAC	3 cut(s)	129, 143, 854
BslI	CCNNNNNNNGG	2 cut(s)	152, 172
BsmAI	GTCTC	1 cut(s)	360
BsmFI	GGGAC	3 cut(s)	129, 143, 854
BsnI	GGCC	4 cut(s)	13, 329, 589, 1070
Bso31I	GGTCTC	1 cut(s)	360
Bsp1286I	GDGCHC	5 cut(s)	93, 118, 459, 856, 993
Bsp143I	GATC	2 cut(s)	66, 1054
Bsp19I	CCATGG	1 cut(s)	324
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	4 cut(s)	13, 329, 589, 1070
BspCNI	CTCAG	3 cut(s)	370, 520, 714
BspHI	TCATGA	1 cut(s)	207
BspLI	GGNNCC	4 cut(s)	90, 145, 842, 990
BspMAI	CTGCAG	1 cut(s)	958
BspT107I	GGYRCC	1 cut(s)	88
BspTNI	GGTCTC	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	882
BsrFI	RCCGGY	1 cut(s)	467
BsrI	ACTGG	2 cut(s)	130, 157
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	2 cut(s)	14, 324
BssMI	GATC	2 cut(s)	66, 1054
BssNI	GRCGYC	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	324
Bst4CI	ACNGT	3 cut(s)	18, 608, 858
Bst6I	CTCTTC	2 cut(s)	759, 764
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	3 cut(s)	591, 621, 1020
BstDEI	CTNAG	5 cut(s)	357, 528, 598, 701, 1029
BstDSI	CCRYGG	2 cut(s)	14, 324
BstF5I	GGATG	2 cut(s)	636, 889
BstHHI	GCGC	1 cut(s)	726
BstKTI	GATC	2 cut(s)	69, 1057
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	2 cut(s)	66, 1054
BstMWI	GCNNNNNNNGC	1 cut(s)	932
BstNSI	RCATGY	2 cut(s)	319, 407
BstSFI	CTRYAG	3 cut(s)	639, 954, 1072
BstSLI	GKGCMC	1 cut(s)	93
BstV1I	GCAGC	3 cut(s)	940, 1009, 1012
Bsu36I	CCTNAGG	1 cut(s)	528
BsuRI	GGCC	4 cut(s)	13, 329, 589, 1070
BtgI	CCRYGG	2 cut(s)	14, 324
BtsCI	GGATG	2 cut(s)	636, 889
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	5 cut(s)	150, 381, 854, 864, 993
Cac8I	GCNNGC	3 cut(s)	591, 621, 1020
CciI	TCATGA	1 cut(s)	207
CfoI	GCGC	1 cut(s)	726
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	3 cut(s)	143, 338, 841
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	123
CspAI	ACCGGT	1 cut(s)	467
CviAII	CATG	7 cut(s)	83, 208, 302, 316, 325, 404, 433
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	5 cut(s)	357, 528, 598, 701, 1029
DpnI	GATC	2 cut(s)	68, 1056
DpnII	GATC	2 cut(s)	66, 1054
EaeI	YGGCCR	2 cut(s)	327, 587
Eam1104I	CTCTTC	2 cut(s)	759, 764
EarI	CTCTTC	2 cut(s)	759, 764
Ecl136II	GAGCTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	324
Eco147I	AGGCCT	1 cut(s)	1070
Eco24I	GRGCYC	2 cut(s)	118, 993
Eco31I	GGTCTC	1 cut(s)	360
Eco47I	GGWCC	3 cut(s)	143, 338, 841
Eco53kI	GAGCTC	1 cut(s)	116
Eco81I	CCTNAGG	1 cut(s)	528
EcoICRI	GAGCTC	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	841
EcoT14I	CCWWGG	1 cut(s)	324
EcoT38I	GRGCYC	2 cut(s)	118, 993
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	7 cut(s)	86, 211, 305, 319, 328, 407, 436
FaqI	GGGAC	3 cut(s)	129, 143, 854
FatI	CATG	7 cut(s)	82, 207, 301, 315, 324, 403, 432
FbaI	TGATCA	1 cut(s)	1054
Fnu4HI	GCNGC	3 cut(s)	954, 1023, 1026
FokI	GGATG	2 cut(s)	643, 896
FriOI	GRGCYC	2 cut(s)	118, 993
Fsp4HI	GCNGC	3 cut(s)	954, 1023, 1026
FspBI	CTAG	1 cut(s)	1044
GlaI	GCGC	1 cut(s)	725
GluI	GCNGC	3 cut(s)	954, 1023, 1026
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	4 cut(s)	13, 329, 589, 1070
HapII	CCGG	1 cut(s)	468
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	726
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	7 cut(s)	86, 211, 305, 319, 328, 407, 436
Hin6I	GCGC	1 cut(s)	724
HinP1I	GCGC	1 cut(s)	724
HinfI	GANTC	3 cut(s)	254, 482, 644
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	5 cut(s)	140, 233, 482, 491, 581
Hpy188I	TCNGA	5 cut(s)	113, 342, 704, 714, 1089
Hpy188III	TCNNGA	8 cut(s)	26, 208, 527, 581, 611, 676, 731, 1058
HpyAV	CCTTC	3 cut(s)	47, 412, 1060
HpyCH4III	ACNGT	3 cut(s)	18, 608, 858
HpyCH4V	TGCA	2 cut(s)	875, 956
HpyF10VI	GCNNNNNNNGC	1 cut(s)	932
HpyF3I	CTNAG	5 cut(s)	357, 528, 598, 701, 1029
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	7 cut(s)	86, 211, 305, 319, 328, 407, 436
HspAI	GCGC	1 cut(s)	724
Ksp22I	TGATCA	1 cut(s)	1054
Kzo9I	GATC	2 cut(s)	66, 1054
LmnI	GCTCC	3 cut(s)	851, 988, 1015
Lsp1109I	GCAGC	3 cut(s)	940, 1009, 1012
LweI	GCATC	2 cut(s)	940, 988
MaeI	CTAG	1 cut(s)	1044
MaeIII	GTNAC	2 cut(s)	569, 795
MalI	GATC	2 cut(s)	68, 1056
MboI	GATC	2 cut(s)	66, 1054
MboII	GAAGA	6 cut(s)	290, 776, 781, 1045, 1048, 1075
MhlI	GDGCHC	5 cut(s)	93, 118, 459, 856, 993
MlsI	TGGCCA	2 cut(s)	329, 589
MluCI	AATT	9 cut(s)	106, 272, 286, 293, 522, 553, 756, 827, 833
MluNI	TGGCCA	2 cut(s)	329, 589
MlyI	GAGTC	1 cut(s)	263
MnlI	CCTC	6 cut(s)	3, 35, 173, 466, 523, 873
Mox20I	TGGCCA	2 cut(s)	329, 589
MscI	TGGCCA	2 cut(s)	329, 589
MseI	TTAA	2 cut(s)	900, 939
MslI	CAYNNNNRTG	2 cut(s)	393, 437
Msp20I	TGGCCA	2 cut(s)	329, 589
MspI	CCGG	1 cut(s)	468
MwoI	GCNNNNNNNGC	1 cut(s)	932
NcoI	CCATGG	1 cut(s)	324
NdeII	GATC	2 cut(s)	66, 1054
NlaIII	CATG	7 cut(s)	86, 211, 305, 319, 328, 407, 436
NlaIV	GGNNCC	4 cut(s)	90, 145, 842, 990
NmuCI	GTSAC	2 cut(s)	569, 795
NspI	RCATGY	2 cut(s)	319, 407
PagI	TCATGA	1 cut(s)	207
PceI	AGGCCT	1 cut(s)	1070
PciI	ACATGT	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	2 cut(s)	482, 644
PflFI	GACNNNGTC	1 cut(s)	918
PinAI	ACCGGT	1 cut(s)	467
PkrI	GCNGC	3 cut(s)	955, 1024, 1027
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
PpuMI	RGGWCCY	1 cut(s)	841
PscI	ACATGT	1 cut(s)	403
Psp124BI	GAGCTC	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	841
PspN4I	GGNNCC	4 cut(s)	90, 145, 842, 990
PspPI	GGNCC	3 cut(s)	143, 338, 841
PspPPI	RGGWCCY	1 cut(s)	841
PstI	CTGCAG	1 cut(s)	958
PsyI	GACNNNGTC	1 cut(s)	918
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
RseI	CAYNNNNRTG	2 cut(s)	393, 437
SacI	GAGCTC	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	900, 939
SatI	GCNGC	3 cut(s)	954, 1023, 1026
Sau3AI	GATC	2 cut(s)	66, 1054
Sau96I	GGNCC	3 cut(s)	143, 338, 841
SchI	GAGTC	1 cut(s)	263
SduI	GDGCHC	5 cut(s)	93, 118, 459, 856, 993
SfaNI	GCATC	2 cut(s)	940, 988
SfcI	CTRYAG	3 cut(s)	639, 954, 1072
SgrAI	CRCCGGYG	1 cut(s)	467
SinI	GGWCC	3 cut(s)	143, 338, 841
SmiMI	CAYNNNNRTG	2 cut(s)	393, 437
Sse9I	AATT	9 cut(s)	106, 272, 286, 293, 522, 553, 756, 827, 833
SseBI	AGGCCT	1 cut(s)	1070
SsiI	CCGC	1 cut(s)	477
SspI	AATATT	1 cut(s)	671
SspMI	CTAG	1 cut(s)	1044
SstI	GAGCTC	1 cut(s)	118
StuI	AGGCCT	1 cut(s)	1070
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	3 cut(s)	18, 608, 858
TaqI	TCGA	3 cut(s)	69, 732, 913
TasI	AATT	9 cut(s)	106, 272, 286, 293, 522, 553, 756, 827, 833
TatI	WGTACW	1 cut(s)	122
TfiI	GAWTC	2 cut(s)	482, 644
Tru1I	TTAA	2 cut(s)	900, 939
Tru9I	TTAA	2 cut(s)	900, 939
TscAI	CASTG	5 cut(s)	157, 388, 861, 871, 1000
TseFI	GTSAC	2 cut(s)	569, 795
TseI	GCWGC	3 cut(s)	953, 1022, 1025
Tsp45I	GTSAC	2 cut(s)	569, 795
TspDTI	ATGAA	6 cut(s)	176, 196, 297, 318, 681, 777
TspGWI	ACGGA	2 cut(s)	73, 477
TspRI	CASTG	5 cut(s)	157, 388, 861, 871, 1000
Tth111I	GACNNNGTC	1 cut(s)	918
VpaK11BI	GGWCC	3 cut(s)	143, 338, 841
XapI	RAATTY	4 cut(s)	106, 272, 286, 522
XceI	RCATGY	2 cut(s)	319, 407
XspI	CTAG	1 cut(s)	1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.