Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002978

Physical Location & Seq

Genomic Coordinates Forward (+)

10000668 .. 10003665

Gene Structure 2998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g13470.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGGGAGGCCAAGGTGCTACTTGGACATATCCATTGGAGGAGAGCTAGAAGGAAGAGTAGTGGTGGAGCTCTACAATGACATTGTCCCCAAAACAGCTGAGAATTTCAGAGCTCTCTGCACTGGTGAGTTGGGCATTGCCCCCCACACCAGTGCTCCTCTGCATTACAAGGGTGTTTGTTTCCACCGCGTTATCAAAGGCTTTATGATTCAAGGTGGAGACATTTCGGCTGGAAATGGCAGTGGGGGAGAGTCGATTTACGGGTTGAAGTTTGAAGATGAAAACTTTGATATAAAGCATGAGAGAAAAGGAATGTTGTCCATGGCTAATAAAGGCCCTGACACCAATGGCTCTCAGTTTTTCATTACCACCACTCGGACTTCTCATCTTGATGGAAAGCATGTTGCGTTTGGGAAGGTCATCAAGGGCATGGGTGTGGTTCGTTCAGTTGAGCATGTGAACACGAAGGACGGAGACTTGCCTATTCAGGAAGTCGTTATTGCGGATTGTGGGCAGCTTCCTGAGGGAGCAGATGATGGGGTGTGTAACTTCTTCAAAGATGGTGATGTTTATCCTGATTGGCCTGCCGATCTTGATACAAAACCAGAGGACATTTCTTGGTGGGTCACGGCTGTGGACACTATTAAGGCCATTGGAAACGAACAGTTCAAGAAGCAAGACTACAAGATGGCCCTTAGAAAGTATCGCAAGGCTTTGCGCTACGTGGATATATGCTGGGAGCTGGAACAAATAGATGAAGAGACGAGCTCCTCTTTGCGGAAGACAAAGTCCCAGATACTTACTAATAGCTCAGCTTGCAGGTTGAAATTAGGAGACCTAGAAGGAGCATTGTTGGACACAGACTTTGCATTGCGTGATTGGGAAGATAATGTGAAGGCTTTGTTTCGCCAAGGCCAGACCTATATGGCACTCAATGACATTGACGCTGCAGTTGAAAGCTTCAAGAAGGCACTGGATTTGGAACCAAATGATGGAGGAATTAAGAAAGAACTTCTGGTTGCTAAAAAGAAGTCACATGGCCCTGTAGGAAGGCCAAAACAACTAGCAGAAGACTTGAGGGAAAATCAGAATACTCTAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04217 ko04218 map04217 map04218

Pfam Domains

Protein Families

Pro_isomerase TPR_1 TPR_2

Protein Analysis

368

Amino Acids

40.7

Weight (kDa)

5.51

Isoelectric Point (pI)

22.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15790
fragaria_vesca	FvH4_1g15560 FvH4_1g15560 FvH4_1g15560 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830
malus_domestica	MD02G1167800.v1.1 MD05G1075200.v1.1 MD15G1280000.v1.1
prunus_persica	Prupe.7G137400_v2.0.a1 Prupe.8G116600_v2.0.a1 Prupe.8G116600_v2.0.a1
pyrus_communis	pycom02g13470 pycom05g06840
rosa_chinensis	RchiOBHm_Chr2g0104891 RchiOBHm_Chr6g0259041
rosa_laevigata	RLG00000014561 RLG00000017365
rosa_multiflora	Rmu_sc0003419.1_g000006 Rmu_ssc0000050.1_g000113
rosa_roxburghii	Rroxscaffold_2G00138700 Rroxscaffold_7G00206290 Rroxscaffold_7G00206440
rosa_rugosa	Rorug02G0123600 Rorug02G0123700 Rorug05G0585100 Rorug05G0585200
rosa_samantha	Rh2AG173900 Rh2BG181500 Rh2CG178800 Rh2DG180200 Rh6AG101400
rosa_wichuraiana	Rw2G013680 Rw6G008820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	810
AccB7I	CCANNNNNTGG	1 cut(s)	992
AccII	CGCG	1 cut(s)	189
AciI	CCGC	3 cut(s)	187, 503, 778
AcsI	RAATTY	1 cut(s)	103
AfiI	CCNNNNNNNGG	3 cut(s)	375, 777, 992
AgsI	TTSAA	8 cut(s)	212, 268, 275, 556, 670, 826, 956, 964
AleI	CACNNNNGTG	2 cut(s)	150, 632
Alw21I	GWGCWC	4 cut(s)	72, 115, 157, 770
Alw26I	GTCTC	4 cut(s)	213, 468, 755, 828
AoxI	GGCC	8 cut(s)	8, 334, 581, 648, 690, 913, 1039, 1052
ApeKI	GCWGC	2 cut(s)	514, 947
ApoI	RAATTY	1 cut(s)	103
ArsI	GACNNNNNNTTYG	2 cut(s)	848, 880
AspLEI	GCGC	1 cut(s)	720
AspS9I	GGNCC	3 cut(s)	335, 691, 1040
AsuHPI	GGTGA	2 cut(s)	137, 575
AxyI	CCTNAGG	1 cut(s)	522
BanII	GRGCYC	3 cut(s)	72, 115, 770
BarI	GAAGNNNNNNTAC	2 cut(s)	665, 697
BbsI	GAAGAC	2 cut(s)	788, 1077
Bbv12I	GWGCWC	4 cut(s)	72, 115, 157, 770
BbvI	GCAGC	2 cut(s)	526, 934
BccI	CCATC	5 cut(s)	386, 530, 554, 682, 986
BceAI	ACGGC	1 cut(s)	645
BcoDI	GTCTC	4 cut(s)	213, 468, 755, 828
BfaI	CTAG	4 cut(s)	47, 839, 1064, 1097
BfmI	CTRYAG	2 cut(s)	948, 1044
BfuAI	ACCTGC	1 cut(s)	810
BisI	GCNGC	2 cut(s)	515, 948
BlpI	GCTNAGC	1 cut(s)	811
BlsI	GCNGC	2 cut(s)	516, 949
BmgT120I	GGNCC	3 cut(s)	335, 691, 1040
BmiI	GGNNCC	1 cut(s)	984
BpiI	GAAGAC	2 cut(s)	788, 1077
BplI	GAGNNNNNCTC	2 cut(s)	752, 784
Bpu1102I	GCTNAGC	1 cut(s)	811
BpuEI	CTTGAG	1 cut(s)	1096
BsaAI	YACGTR	1 cut(s)	724
BsaBI	GATNNNNATC	1 cut(s)	570
BsaI	GGTCTC	1 cut(s)	828
BsaJI	CCNNGG	3 cut(s)	11, 321, 910
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	3 cut(s)	375, 777, 992
Bse1I	ACTGG	3 cut(s)	127, 150, 978
Bse21I	CCTNAGG	1 cut(s)	522
Bse3DI	GCAATG	2 cut(s)	135, 869
Bse8I	GATNNNNATC	1 cut(s)	570
BseDI	CCNNGG	3 cut(s)	11, 321, 910
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	3 cut(s)	375, 777, 992
BseMI	GCAATG	2 cut(s)	135, 869
BseMII	CTCAG	4 cut(s)	90, 368, 513, 825
BseNI	ACTGG	3 cut(s)	127, 150, 978
BseRI	GAGGAG	3 cut(s)	54, 147, 760
BseXI	GCAGC	2 cut(s)	526, 934
BseYI	CCCAGC	1 cut(s)	735
BsgI	GTGCAG	1 cut(s)	103
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	8 cut(s)	10, 336, 583, 650, 692, 915, 1041, 1054
BsiHKAI	GWGCWC	4 cut(s)	72, 115, 157, 770
BslFI	GGGAC	2 cut(s)	71, 775
BslI	CCNNNNNNNGG	3 cut(s)	375, 777, 992
BsmAI	GTCTC	4 cut(s)	213, 468, 755, 828
BsmBI	CGTCTC	1 cut(s)	755
BsmFI	GGGAC	2 cut(s)	71, 775
BsnI	GGCC	8 cut(s)	10, 336, 583, 650, 692, 915, 1041, 1054
Bso31I	GGTCTC	1 cut(s)	828
Bsp1286I	GDGCHC	4 cut(s)	72, 115, 157, 770
Bsp143I	GATC	1 cut(s)	589
Bsp1720I	GCTNAGC	1 cut(s)	811
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	3 cut(s)	187, 503, 778
BspANI	GGCC	8 cut(s)	10, 336, 583, 650, 692, 915, 1041, 1054
BspCNI	CTCAG	4 cut(s)	91, 367, 514, 824
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	984
BspMAI	CTGCAG	1 cut(s)	952
BspMI	ACCTGC	1 cut(s)	810
BspTNI	GGTCTC	1 cut(s)	828
BsrDI	GCAATG	2 cut(s)	135, 869
BsrI	ACTGG	3 cut(s)	127, 150, 978
BssECI	CCNNGG	3 cut(s)	11, 321, 910
BssMI	GATC	1 cut(s)	589
BssT1I	CCWWGG	3 cut(s)	11, 321, 910
Bst4CI	ACNGT	1 cut(s)	666
Bst6I	CTCTTC	2 cut(s)	49, 753
BstBAI	YACGTR	1 cut(s)	724
BstC8I	GCNNGC	2 cut(s)	585, 817
BstDEI	CTNAG	5 cut(s)	99, 354, 522, 695, 811
BstDSI	CCRYGG	1 cut(s)	321
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	720
BstKTI	GATC	1 cut(s)	592
BstMAI	GTCTC	4 cut(s)	213, 468, 755, 828
BstMBI	GATC	1 cut(s)	589
BstMWI	GCNNNNNNNGC	1 cut(s)	816
BstNSI	RCATGY	2 cut(s)	404, 458
BstSFI	CTRYAG	2 cut(s)	948, 1044
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	2 cut(s)	526, 934
BstV2I	GAAGAC	2 cut(s)	788, 1077
Bsu36I	CCTNAGG	1 cut(s)	522
BsuRI	GGCC	8 cut(s)	10, 336, 583, 650, 692, 915, 1041, 1054
BtgI	CCRYGG	1 cut(s)	321
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	4 cut(s)	120, 157, 247, 971
BveI	ACCTGC	1 cut(s)	810
Cac8I	GCNNGC	2 cut(s)	585, 817
CfoI	GCGC	1 cut(s)	720
Cfr13I	GGNCC	3 cut(s)	335, 691, 1040
CseI	GACGC	1 cut(s)	953
CviAII	CATG	6 cut(s)	299, 322, 401, 430, 455, 1037
DdeI	CTNAG	5 cut(s)	99, 354, 522, 695, 811
DpnI	GATC	1 cut(s)	591
DpnII	GATC	1 cut(s)	589
Eam1104I	CTCTTC	2 cut(s)	49, 753
EarI	CTCTTC	2 cut(s)	49, 753
Ecl136II	GAGCTC	3 cut(s)	70, 113, 768
Eco130I	CCWWGG	3 cut(s)	11, 321, 910
Eco24I	GRGCYC	3 cut(s)	72, 115, 770
Eco31I	GGTCTC	1 cut(s)	828
Eco53kI	GAGCTC	3 cut(s)	70, 113, 768
Eco81I	CCTNAGG	1 cut(s)	522
EcoICRI	GAGCTC	3 cut(s)	70, 113, 768
EcoO109I	RGGNCCY	1 cut(s)	335
EcoT14I	CCWWGG	3 cut(s)	11, 321, 910
EcoT38I	GRGCYC	3 cut(s)	72, 115, 770
ErhI	CCWWGG	3 cut(s)	11, 321, 910
Esp3I	CGTCTC	1 cut(s)	755
FaeI	CATG	6 cut(s)	302, 325, 404, 433, 458, 1040
FaqI	GGGAC	2 cut(s)	71, 775
FatI	CATG	6 cut(s)	298, 321, 400, 429, 454, 1036
Fnu4HI	GCNGC	2 cut(s)	515, 948
FriOI	GRGCYC	3 cut(s)	72, 115, 770
Fsp4HI	GCNGC	2 cut(s)	515, 948
FspBI	CTAG	4 cut(s)	47, 839, 1064, 1097
GlaI	GCGC	1 cut(s)	719
GluI	GCNGC	2 cut(s)	515, 948
GsaI	CCCAGC	1 cut(s)	739
HaeIII	GGCC	8 cut(s)	10, 336, 583, 650, 692, 915, 1041, 1054
HgaI	GACGC	1 cut(s)	953
HhaI	GCGC	1 cut(s)	720
Hin1II	CATG	6 cut(s)	302, 325, 404, 433, 458, 1040
Hin6I	GCGC	1 cut(s)	718
HinP1I	GCGC	1 cut(s)	718
HindIII	AAGCTT	1 cut(s)	958
HinfI	GANTC	2 cut(s)	208, 251
HphI	GGTGA	2 cut(s)	137, 575
Hpy166II	GTNNAC	2 cut(s)	460, 637
Hpy188I	TCNGA	3 cut(s)	110, 378, 1089
Hpy188III	TCNNGA	7 cut(s)	389, 488, 521, 575, 593, 670, 964
Hpy8I	GTNNAC	2 cut(s)	460, 637
HpyAV	CCTTC	7 cut(s)	44, 409, 460, 836, 889, 961, 1044
HpyCH4III	ACNGT	1 cut(s)	666
HpyCH4IV	ACGT	1 cut(s)	723
HpyCH4V	TGCA	5 cut(s)	120, 163, 819, 869, 950
HpyF10VI	GCNNNNNNNGC	1 cut(s)	816
HpyF3I	CTNAG	5 cut(s)	99, 354, 522, 695, 811
HpySE526I	ACGT	1 cut(s)	723
Hsp92II	CATG	6 cut(s)	302, 325, 404, 433, 458, 1040
HspAI	GCGC	1 cut(s)	718
Kzo9I	GATC	1 cut(s)	589
LmnI	GCTCC	6 cut(s)	67, 160, 527, 739, 773, 845
Lsp1109I	GCAGC	2 cut(s)	526, 934
MaeI	CTAG	4 cut(s)	47, 839, 1064, 1097
MaeII	ACGT	1 cut(s)	723
MaeIII	GTNAC	3 cut(s)	545, 625, 1032
MalI	GATC	1 cut(s)	591
MboI	GATC	1 cut(s)	589
MboII	GAAGA	7 cut(s)	66, 287, 544, 770, 793, 896, 1082
MhlI	GDGCHC	4 cut(s)	72, 115, 157, 770
MluCI	AATT	3 cut(s)	103, 827, 999
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	834
MnlI	CCTC	7 cut(s)	32, 168, 517, 601, 781, 989, 1071
MseI	TTAA	3 cut(s)	645, 1002, 1102
MslI	CAYNNNNRTG	4 cut(s)	150, 390, 434, 632
MspA1I	CMGCKG	1 cut(s)	98
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	816
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	1 cut(s)	589
NlaIII	CATG	6 cut(s)	302, 325, 404, 433, 458, 1040
NlaIV	GGNNCC	1 cut(s)	984
NmuCI	GTSAC	2 cut(s)	625, 1032
NspI	RCATGY	2 cut(s)	404, 458
OliI	CACNNNNGTG	2 cut(s)	150, 632
PfeI	GAWTC	1 cut(s)	208
PflFI	GACNNNGTC	2 cut(s)	83, 787
PflMI	CCANNNNNTGG	1 cut(s)	992
PkrI	GCNGC	2 cut(s)	516, 949
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
Ppu21I	YACGTR	1 cut(s)	724
Psp124BI	GAGCTC	3 cut(s)	72, 115, 770
PspFI	CCCAGC	1 cut(s)	735
PspN4I	GGNNCC	1 cut(s)	984
PspPI	GGNCC	3 cut(s)	335, 691, 1040
PstI	CTGCAG	1 cut(s)	952
PsyI	GACNNNGTC	2 cut(s)	83, 787
PvuII	CAGCTG	1 cut(s)	98
RseI	CAYNNNNRTG	4 cut(s)	150, 390, 434, 632
SacI	GAGCTC	3 cut(s)	72, 115, 770
SaqAI	TTAA	3 cut(s)	645, 1002, 1102
SatI	GCNGC	2 cut(s)	515, 948
Sau3AI	GATC	1 cut(s)	589
Sau96I	GGNCC	3 cut(s)	335, 691, 1040
SchI	GAGTC	1 cut(s)	260
SduI	GDGCHC	4 cut(s)	72, 115, 157, 770
SfcI	CTRYAG	2 cut(s)	948, 1044
SmiMI	CAYNNNNRTG	4 cut(s)	150, 390, 434, 632
SmlI	CTYRAG	1 cut(s)	1075
SmoI	CTYRAG	1 cut(s)	1075
Sse9I	AATT	3 cut(s)	103, 827, 999
SsiI	CCGC	3 cut(s)	187, 503, 778
SspMI	CTAG	4 cut(s)	47, 839, 1064, 1097
SstI	GAGCTC	3 cut(s)	72, 115, 770
StyI	CCWWGG	3 cut(s)	11, 321, 910
TaaI	ACNGT	1 cut(s)	666
TaiI	ACGT	1 cut(s)	726
TaqI	TCGA	1 cut(s)	254
TasI	AATT	3 cut(s)	103, 827, 999
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	3 cut(s)	645, 1002, 1102
Tru9I	TTAA	3 cut(s)	645, 1002, 1102
TscAI	CASTG	4 cut(s)	127, 157, 247, 978
TseFI	GTSAC	2 cut(s)	625, 1032
TseI	GCWGC	2 cut(s)	514, 947
Tsp45I	GTSAC	2 cut(s)	625, 1032
TspDTI	ATGAA	3 cut(s)	294, 352, 771
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	4 cut(s)	127, 157, 247, 978
Tth111I	GACNNNGTC	2 cut(s)	83, 787
Van91I	CCANNNNNTGG	1 cut(s)	992
XapI	RAATTY	1 cut(s)	103
XceI	RCATGY	2 cut(s)	404, 458
XspI	CTAG	4 cut(s)	47, 839, 1064, 1097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.