FvH4_1g15560

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002978
Physical Location & Seq
Forward (+)
8834420 .. 8839654
5235 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g15560.t2

Sequence Viewer

Length: 1095 bp
ATGCCCAGGCCGAGGTGCTACCTGGACATCTCCATAGGAGGCGAGCTCGAGGGTAGAATCGTCATCGAGCTCTACAACGACGTCGTCCCGAAAACCGCGGAGAATTTCCGCGCCCTCTGCACCGGCGAGAAAGGCATTTCCCCCACCACCGGCGTCCCCCTCCATTTCAAGGGAGTTGGTTTCCACCGCATTATCAAGGGGTTTATGATCCAAGGCGGGGACATTTCCGCCGGAGACGGGAGCGGCGGAGAGTCGATTTACGGCGCGAAATTCGAGGACGAGAATTTCGAGATTAAGCATGAGAGGAAGGGGATGGTGTCGATGGCGAATACCGGGCCGGATACTAACGGGTCGCAGTTTTTCATTACGACTACTAGGACTCCGCATTTGGATGGGAAGCATGTTGTGTTTGGGAGGGTGGTTAAGGGATTGGGGGTTGCGAGGTCGATTGAGCATGTGATTGCTAAGGATGATGGGGAGCATGTGCCGACTCAGGAGGCTGTGATTGCGGAATGTGGAGAGCTGGCTGAGGGGGAAGATGATGGGGTGTGTAATTTTTTTAAAGATGGGGATGTGTATCCGGATTGGCCGGTTGATCTTGATGAGAAGCATGAGGAGGTTTCGTGGTGGGTTGTGGCTGTGAATGCGATTAAGGCACTTGGAAATGAGCAGTTTAAGAAGCAGGACTATAAGATGGCGCTGAGGAAGTATCGCAAGGCTTTGCGGTACTTGGATGTGTGCTGGGAGTTGGAGGATATCAATGAATATAACAGCTCCTCTTTGCGGCAGACAAAGTCTCAGATATTCACTAATAGCTCAGCTTGTAGATTGAAATTAGGAGACCTAGAAGGAGCATTGTTGGACACAGACTTTGCATTGCGTGATTGGGAGGATAATGTGAAGGCTATGTTTCGCCAAGGCCAGACATATATGGCACTAAATGACATCGACTCTGCAGTTGAAAGCTTCAAAAAGGCACTGGAATTGGAACCAAATGATGGAGGAATTAAGAAAGAGCTTCAGGTTGCTAAAAAGAAGGTTGCTGATAGGAGTGAGAGAGAAAAGCAAGCATATTCTAGAATGTTCAACCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04217 ko04218 map04217 map04218
Pfam Domains
Protein Families
Pro_isomerase TPR_1 TPR_2

Protein Analysis

365

Amino Acids

40.76

Weight (kDa)

5.3

Isoelectric Point (pI)

28.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 7 - 173 7.9e-48 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
TPR_2 PF07719 301 - 333 3.8e-07 Tetratricopeptide repeat
TPR_1 PF00515 301 - 333 1.2e-07 Tetratricopeptide repeat
TPR_8 PF13181 301 - 333 2.5e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 84
AccB7I CCANNNNNTGG 1 cut(s) 998
AccBSI CCGCTC 1 cut(s) 243
AccII CGCG 3 cut(s) 98, 111, 266
AccIII TCCGGA 1 cut(s) 580
AclWI GGATC 1 cut(s) 202
AcoI YGGCCR 1 cut(s) 587
AcsI RAATTY 3 cut(s) 103, 269, 283
AcuI CTGAAG 1 cut(s) 1004
AcyI GRCGYC 2 cut(s) 81, 153
AfaI GTAC 1 cut(s) 728
AfiI CCNNNNNNNGG 7 cut(s) 12, 149, 169, 217, 237, 783, 998
AgsI TTSAA 5 cut(s) 169, 832, 962, 970, 1087
AjnI CCWGG 2 cut(s) 5, 21
AluBI AGCT 8 cut(s) 46, 70, 523, 774, 816, 821, 966, 1018
AluI AGCT 8 cut(s) 46, 70, 523, 774, 816, 821, 966, 1018
Alw21I GWGCWC 2 cut(s) 48, 72
Alw26I GTCTC 3 cut(s) 228, 801, 834
AlwI GGATC 1 cut(s) 202
Ama87I CYCGRG 1 cut(s) 47
Aor13HI TCCGGA 1 cut(s) 580
AoxI GGCC 4 cut(s) 8, 335, 587, 919
ApoI RAATTY 3 cut(s) 103, 269, 283
ArsI GACNNNNNNTTYG 6 cut(s) 269, 301, 370, 402, 854, 886
AspLEI GCGC 3 cut(s) 113, 266, 700
AspS9I GGNCC 1 cut(s) 335
AsuC2I CCSGG 1 cut(s) 334
AvaI CYCGRG 1 cut(s) 47
BanII GRGCYC 2 cut(s) 48, 72
Bbv12I GWGCWC 2 cut(s) 48, 72
BbvCI CCTCAGC 2 cut(s) 528, 701
BccI CCATC 8 cut(s) 307, 316, 386, 467, 536, 560, 688, 992
BceAI ACGGC 1 cut(s) 277
BciT130I CCWGG 2 cut(s) 7, 23
BciVI GTATCC 2 cut(s) 334, 588
BcnI CCSGG 1 cut(s) 334
BcoDI GTCTC 3 cut(s) 228, 801, 834
BfaI CTAG 3 cut(s) 375, 845, 1077
BfmI CTRYAG 1 cut(s) 954
BfoI RGCGCY 1 cut(s) 701
BfuI GTATCC 2 cut(s) 334, 588
BisI GCNGC 2 cut(s) 244, 785
BlpI GCTNAGC 1 cut(s) 817
BlsI GCNGC 2 cut(s) 245, 786
Bme1390I CCNGG 3 cut(s) 7, 23, 334
BmeT110I CYCGRG 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 990
BmrFI CCNGG 3 cut(s) 7, 23, 334
BplI GAGNNNNNCTC 2 cut(s) 30, 62
Bpu10I CCTNAGC 3 cut(s) 465, 528, 701
Bpu1102I GCTNAGC 1 cut(s) 817
BpuMI CCSGG 1 cut(s) 334
BsaBI GATNNNNATC 1 cut(s) 576
BsaHI GRCGYC 2 cut(s) 81, 153
BsaI GGTCTC 1 cut(s) 834
BsaJI CCNNGG 5 cut(s) 5, 11, 96, 211, 916
BsaWI WCCGGW 1 cut(s) 580
BsaXI ACNNNNNCTCC 4 cut(s) 364, 394, 608, 638
Bsc4I CCNNNNNNNGG 7 cut(s) 12, 149, 169, 217, 237, 783, 998
Bse118I RCCGGY 3 cut(s) 122, 149, 589
Bse1I ACTGG 1 cut(s) 984
Bse3DI GCAATG 1 cut(s) 875
Bse8I GATNNNNATC 1 cut(s) 576
BseAI TCCGGA 1 cut(s) 580
BseBI CCWGG 2 cut(s) 7, 23
BseDI CCNNGG 5 cut(s) 5, 11, 96, 211, 916
BseGI GGATG 5 cut(s) 318, 397, 475, 577, 739
BseJI GATNNNNATC 1 cut(s) 576
BseLI CCNNNNNNNGG 7 cut(s) 12, 149, 169, 217, 237, 783, 998
BseMI GCAATG 1 cut(s) 875
BseMII CTCAG 5 cut(s) 506, 519, 692, 812, 831
BseNI ACTGG 1 cut(s) 984
BseRI GAGGAG 2 cut(s) 629, 766
BseYI CCCAGC 1 cut(s) 741
BsgI GTGCAG 1 cut(s) 103
Bsh1236I CGCG 3 cut(s) 98, 111, 266
BshFI GGCC 4 cut(s) 10, 337, 589, 921
BsiHKAI GWGCWC 2 cut(s) 48, 72
BsiHKCI CYCGRG 1 cut(s) 47
BsiSI CCGG 7 cut(s) 123, 150, 231, 333, 338, 581, 590
BslFI GGGAC 3 cut(s) 71, 140, 233
BslI CCNNNNNNNGG 7 cut(s) 12, 149, 169, 217, 237, 783, 998
BsmAI GTCTC 3 cut(s) 228, 801, 834
BsmBI CGTCTC 1 cut(s) 228
BsmFI GGGAC 3 cut(s) 71, 140, 233
BsmI GAATGC 1 cut(s) 649
BsnI GGCC 4 cut(s) 10, 337, 589, 921
Bso31I GGTCTC 1 cut(s) 834
BsoBI CYCGRG 1 cut(s) 47
Bsp1286I GDGCHC 2 cut(s) 48, 72
Bsp13I TCCGGA 1 cut(s) 580
Bsp143I GATC 2 cut(s) 207, 595
Bsp1720I GCTNAGC 1 cut(s) 817
BspANI GGCC 4 cut(s) 10, 337, 589, 921
BspCNI CTCAG 5 cut(s) 505, 520, 693, 811, 830
BspEI TCCGGA 1 cut(s) 580
BspFNI CGCG 3 cut(s) 98, 111, 266
BspLI GGNNCC 1 cut(s) 990
BspMAI CTGCAG 1 cut(s) 958
BspPI GGATC 1 cut(s) 202
BspTNI GGTCTC 1 cut(s) 834
BsrBI CCGCTC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 875
BsrFI RCCGGY 3 cut(s) 122, 149, 589
BsrI ACTGG 1 cut(s) 984
BssAI RCCGGY 3 cut(s) 122, 149, 589
BssECI CCNNGG 5 cut(s) 5, 11, 96, 211, 916
BssMI GATC 2 cut(s) 207, 595
BssNI GRCGYC 2 cut(s) 81, 153
BssT1I CCWWGG 2 cut(s) 211, 916
Bst2UI CCWGG 2 cut(s) 7, 23
BstACI GRCGYC 2 cut(s) 81, 153
BstC8I GCNNGC 3 cut(s) 44, 525, 1068
BstDEI CTNAG 6 cut(s) 465, 492, 528, 701, 798, 817
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 5 cut(s) 318, 397, 475, 577, 739
BstFNI CGCG 3 cut(s) 98, 111, 266
BstH2I RGCGCY 1 cut(s) 701
BstHHI GCGC 3 cut(s) 113, 266, 700
BstKTI GATC 2 cut(s) 210, 598
BstMAI GTCTC 3 cut(s) 228, 801, 834
BstMBI GATC 2 cut(s) 207, 595
BstMWI GCNNNNNNNGC 5 cut(s) 117, 132, 506, 644, 653
BstNI CCWGG 2 cut(s) 7, 23
BstNSI RCATGY 3 cut(s) 404, 458, 485
BstSCI CCNGG 3 cut(s) 5, 21, 332
BstSFI CTRYAG 1 cut(s) 954
BstUI CGCG 3 cut(s) 98, 111, 266
BsuI GTATCC 2 cut(s) 334, 588
BsuRI GGCC 4 cut(s) 10, 337, 589, 921
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 5 cut(s) 318, 397, 475, 577, 739
BtsIMutI CAGTG 1 cut(s) 977
Cac8I GCNNGC 3 cut(s) 44, 525, 1068
CfoI GCGC 3 cut(s) 113, 266, 700
Cfr10I RCCGGY 3 cut(s) 122, 149, 589
Cfr13I GGNCC 1 cut(s) 335
Cfr42I CCGCGG 1 cut(s) 99
CseI GACGC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 727
CviAII CATG 5 cut(s) 299, 401, 455, 482, 611
CviQI GTAC 1 cut(s) 727
DdeI CTNAG 6 cut(s) 465, 492, 528, 701, 798, 817
DpnI GATC 2 cut(s) 209, 597
DpnII GATC 2 cut(s) 207, 595
DraI TTTAAA 1 cut(s) 562
EaeI YGGCCR 1 cut(s) 587
EciI GGCGGA 2 cut(s) 217, 261
Ecl136II GAGCTC 2 cut(s) 46, 70
Eco130I CCWWGG 2 cut(s) 211, 916
Eco24I GRGCYC 2 cut(s) 48, 72
Eco31I GGTCTC 1 cut(s) 834
Eco32I GATATC 1 cut(s) 757
Eco53kI GAGCTC 2 cut(s) 46, 70
Eco57I CTGAAG 1 cut(s) 1004
Eco88I CYCGRG 1 cut(s) 47
EcoICRI GAGCTC 2 cut(s) 46, 70
EcoRII CCWGG 2 cut(s) 5, 21
EcoRV GATATC 1 cut(s) 757
EcoT14I CCWWGG 2 cut(s) 211, 916
EcoT38I GRGCYC 2 cut(s) 48, 72
ErhI CCWWGG 2 cut(s) 211, 916
Esp3I CGTCTC 1 cut(s) 228
FaeI CATG 5 cut(s) 302, 404, 458, 485, 614
FaqI GGGAC 3 cut(s) 71, 140, 233
FatI CATG 5 cut(s) 298, 400, 454, 481, 610
FauI CCCGC 1 cut(s) 209
Fnu4HI GCNGC 2 cut(s) 244, 785
FokI GGATG 5 cut(s) 325, 404, 482, 584, 746
FriOI GRGCYC 2 cut(s) 48, 72
Fsp4HI GCNGC 2 cut(s) 244, 785
FspBI CTAG 3 cut(s) 375, 845, 1077
GlaI GCGC 3 cut(s) 112, 265, 699
GluI GCNGC 2 cut(s) 244, 785
GsaI CCCAGC 1 cut(s) 745
HaeII RGCGCY 1 cut(s) 701
HaeIII GGCC 4 cut(s) 10, 337, 589, 921
HapII CCGG 7 cut(s) 123, 150, 231, 333, 338, 581, 590
HgaI GACGC 1 cut(s) 142
HhaI GCGC 3 cut(s) 113, 266, 700
Hin1I GRCGYC 2 cut(s) 81, 153
Hin1II CATG 5 cut(s) 302, 404, 458, 485, 614
Hin6I GCGC 3 cut(s) 111, 264, 698
HinP1I GCGC 3 cut(s) 111, 264, 698
HindIII AAGCTT 1 cut(s) 964
HinfI GANTC 5 cut(s) 57, 251, 379, 490, 950
HpaII CCGG 7 cut(s) 123, 150, 231, 333, 338, 581, 590
Hpy188I TCNGA 1 cut(s) 801
Hpy188III TCNNGA 6 cut(s) 88, 289, 494, 581, 599, 1077
Hpy99I CGWCG 2 cut(s) 83, 86
HpyAV CCTTC 4 cut(s) 301, 842, 895, 1030
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 3 cut(s) 120, 875, 956
HpyF10VI GCNNNNNNNGC 5 cut(s) 117, 132, 506, 644, 653
HpyF3I CTNAG 6 cut(s) 465, 492, 528, 701, 798, 817
HpySE526I ACGT 1 cut(s) 81
Hsp92I GRCGYC 2 cut(s) 81, 153
Hsp92II CATG 5 cut(s) 302, 404, 458, 485, 614
HspAI GCGC 3 cut(s) 111, 264, 698
Kpn2I TCCGGA 1 cut(s) 580
KspI CCGCGG 1 cut(s) 99
Kzo9I GATC 2 cut(s) 207, 595
LmnI GCTCC 4 cut(s) 240, 478, 779, 851
MaeI CTAG 3 cut(s) 375, 845, 1077
MaeII ACGT 1 cut(s) 81
MalI GATC 2 cut(s) 209, 597
MbiI CCGCTC 1 cut(s) 243
MboI GATC 2 cut(s) 207, 595
MboII GAAGA 1 cut(s) 548
MhlI GDGCHC 2 cut(s) 48, 72
MluCI AATT 7 cut(s) 103, 269, 283, 553, 833, 983, 1005
MlyI GAGTC 4 cut(s) 260, 373, 484, 944
MmeI TCCRAC 2 cut(s) 729, 840
MroI TCCGGA 1 cut(s) 580
MseI TTAA 6 cut(s) 294, 423, 561, 651, 675, 1008
MslI CAYNNNNRTG 1 cut(s) 390
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 7 cut(s) 123, 150, 231, 333, 338, 581, 590
MspR9I CCNGG 3 cut(s) 7, 23, 334
Mva1269I GAATGC 1 cut(s) 649
MvaI CCWGG 2 cut(s) 7, 23
MvnI CGCG 3 cut(s) 98, 111, 266
MwoI GCNNNNNNNGC 5 cut(s) 117, 132, 506, 644, 653
NciI CCSGG 1 cut(s) 334
NdeII GATC 2 cut(s) 207, 595
NlaIII CATG 5 cut(s) 302, 404, 458, 485, 614
NlaIV GGNNCC 1 cut(s) 990
NmeAIII GCCGAG 1 cut(s) 36
NspI RCATGY 3 cut(s) 404, 458, 485
PaeR7I CTCGAG 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PctI GAATGC 1 cut(s) 649
PfeI GAWTC 1 cut(s) 57
PflFI GACNNNGTC 2 cut(s) 83, 793
PflMI CCANNNNNTGG 1 cut(s) 998
PkrI GCNGC 2 cut(s) 245, 786
PleI GAGTC 4 cut(s) 259, 373, 484, 944
PpsI GAGTC 4 cut(s) 259, 373, 484, 944
Psp124BI GAGCTC 2 cut(s) 48, 72
Psp6I CCWGG 2 cut(s) 5, 21
PspFI CCCAGC 1 cut(s) 741
PspGI CCWGG 2 cut(s) 5, 21
PspN4I GGNNCC 1 cut(s) 990
PspPI GGNCC 1 cut(s) 335
PspXI VCTCGAGB 1 cut(s) 47
PstI CTGCAG 1 cut(s) 958
PsyI GACNNNGTC 2 cut(s) 83, 793
RsaI GTAC 1 cut(s) 728
RsaNI GTAC 1 cut(s) 727
RseI CAYNNNNRTG 1 cut(s) 390
SacI GAGCTC 2 cut(s) 48, 72
SacII CCGCGG 1 cut(s) 99
SaqAI TTAA 6 cut(s) 294, 423, 561, 651, 675, 1008
SatI GCNGC 2 cut(s) 244, 785
Sau3AI GATC 2 cut(s) 207, 595
Sau96I GGNCC 1 cut(s) 335
SchI GAGTC 4 cut(s) 260, 373, 484, 944
ScrFI CCNGG 3 cut(s) 7, 23, 334
SduI GDGCHC 2 cut(s) 48, 72
SfcI CTRYAG 1 cut(s) 954
Sfr274I CTCGAG 1 cut(s) 47
Sfr303I CCGCGG 1 cut(s) 99
SgrAI CRCCGGYG 2 cut(s) 122, 149
SgrBI CCGCGG 1 cut(s) 99
SlaI CTCGAG 1 cut(s) 47
SmiMI CAYNNNNRTG 1 cut(s) 390
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 7 cut(s) 103, 269, 283, 553, 833, 983, 1005
SspMI CTAG 3 cut(s) 375, 845, 1077
SstI GAGCTC 2 cut(s) 48, 72
StyD4I CCNGG 3 cut(s) 5, 21, 332
StyI CCWWGG 2 cut(s) 211, 916
TaiI ACGT 1 cut(s) 84
TaqI TCGA 8 cut(s) 48, 66, 254, 273, 288, 320, 446, 948
TasI AATT 7 cut(s) 103, 269, 283, 553, 833, 983, 1005
TauI GCSGC 2 cut(s) 246, 787
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 6 cut(s) 294, 423, 561, 651, 675, 1008
Tru9I TTAA 6 cut(s) 294, 423, 561, 651, 675, 1008
TscAI CASTG 1 cut(s) 984
TspDTI ATGAA 2 cut(s) 352, 777
TspRI CASTG 1 cut(s) 984
Tth111I GACNNNGTC 2 cut(s) 83, 793
Van91I CCANNNNNTGG 1 cut(s) 998
XapI RAATTY 3 cut(s) 103, 269, 283
XbaI TCTAGA 1 cut(s) 1076
XceI RCATGY 3 cut(s) 404, 458, 485
XhoI CTCGAG 1 cut(s) 47
XspI CTAG 3 cut(s) 375, 845, 1077
ZraI GACGTC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.