Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002978

Physical Location & Seq

Genomic Coordinates Reverse (-)

55945449 .. 55948939

Gene Structure 3491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00206290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGGGGAGAGGCCACGGTGCTTTCTGGACATTAGCATAGGAGGAGAGCTTGAAGGACGGATAGTGATCGAGCTTTACGACCATGTGGTGCCCAAAACGGCAGAGAATTTCAGAGCTCTCTGTACTGGTGAGAAAGGCATTGGTCCCAACACTGGCGTCCCCCTCCACTACAAGGGAAACCATTTTCATCGTGTTGTCAAAGGCTTCATGATACAAGGGGGTGATATTTCTGCTGGAGATGGCACGGGGGGAGAGTCTATCTATGGGCTGAAATTTGAAGATGAAAATTTTGAATTGAAACATGAAAGGAAAGGCATGTTATCCATGGCCAATGCTGGTCCGAACACCAATGGGTCTCAGTTTTTTATCACAACAACTCGCACTGCTCATTTAGATGGGAAACATGTGGTGTTTGGGAAGGTAGTGAAAGGCATGGGAGTGGGGGCTGATGATGGAATATCTAATTTATTCAAAGATGGTGACACTTATCCTGATTGGCCAGCCGACTTAGATAACAGTCCTGATGAGCTTTCTTGGTGGATGACTTCTGTAGATTCAATCAAGGCTTTTGGTAATGAATATTTCAAGAAACAAGACTACAAGATGGCTCTCAGAAAGTATCGGAAATCTTTGCGCTATCTCGATATTTGTTGGGAGAAAGATGGAATTGATGAAGAGAAGAGTTCAAGTTTGAGAAAAACCAAGTCACAGATTTTCACTAACAGCTCTGCTTGTAAATTGAAATTGGGGGACCTGAAAGGAGCACTGTTAGACACTGACTTTGCAATGAGGGATGGAGAAAATAATGTTAAGGCTTTGTTTCGACAAGGTCAGGCATACATAGCACTTAATGATATTGATGCTGCAGTTGAGAGCTTCAAAAAGGCATTGGATTTGGAGCCCACTGATGCTGGAATAAAAAAGGAGCTTGCTGCTGCTAAGAAGAAGATTTCTAGTAGGCGTGATCAGGAGAAGAAGGCCTACAGCAAGATGTTTCAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000413 GO:0003006 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010022 GO:0010050 GO:0010073 GO:0010582 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090567 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04217 ko04218 map04217 map04218

Pfam Domains

Protein Families

Pro_isomerase TPR_1 TPR_2

Protein Analysis

334

Amino Acids

37.19

Weight (kDa)

8.14

Isoelectric Point (pI)

20.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	9 - 147	3.9e-44	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
TPR_1	PF00515	270 - 303	1.5e-07	Tetratricopeptide repeat
TPR_2	PF07719	271 - 303	5.6e-07	Tetratricopeptide repeat
TPR_8	PF13181	271 - 302	4e-07	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15790
fragaria_vesca	FvH4_1g15560 FvH4_1g15560 FvH4_1g15560 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830
malus_domestica	MD02G1167800.v1.1 MD05G1075200.v1.1 MD15G1280000.v1.1
prunus_persica	Prupe.7G137400_v2.0.a1 Prupe.8G116600_v2.0.a1 Prupe.8G116600_v2.0.a1
pyrus_communis	pycom02g13470 pycom05g06840
rosa_chinensis	RchiOBHm_Chr2g0104891 RchiOBHm_Chr6g0259041
rosa_laevigata	RLG00000014561 RLG00000017365
rosa_multiflora	Rmu_sc0003419.1_g000006 Rmu_ssc0000050.1_g000113
rosa_roxburghii	Rroxscaffold_2G00138700 Rroxscaffold_7G00206290 Rroxscaffold_7G00206440
rosa_rugosa	Rorug02G0123600 Rorug02G0123700 Rorug05G0585100 Rorug05G0585200
rosa_samantha	Rh2AG173900 Rh2BG181500 Rh2CG178800 Rh2DG180200 Rh6AG101400
rosa_wichuraiana	Rw2G013680 Rw6G008820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	88
AcoI	YGGCCR	2 cut(s)	327, 497
AcsI	RAATTY	3 cut(s)	106, 272, 286
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	2 cut(s)	152, 172
AflIII	ACRYGT	1 cut(s)	403
AluBI	AGCT	7 cut(s)	49, 73, 116, 529, 726, 876, 928
AluI	AGCT	7 cut(s)	49, 73, 116, 529, 726, 876, 928
Alw21I	GWGCWC	2 cut(s)	118, 766
Alw26I	GTCTC	1 cut(s)	360
AoxI	GGCC	4 cut(s)	11, 327, 497, 978
ApeKI	GCWGC	3 cut(s)	863, 932, 935
ApoI	RAATTY	3 cut(s)	106, 272, 286
ArsI	GACNNNNNNTTYG	2 cut(s)	764, 796
AspLEI	GCGC	1 cut(s)	636
AspS9I	GGNCC	3 cut(s)	143, 338, 751
AsuHPI	GGTGA	3 cut(s)	140, 233, 491
AvaII	GGWCC	3 cut(s)	143, 338, 751
BaeGI	GKGCMC	1 cut(s)	93
BalI	TGGCCA	2 cut(s)	329, 499
BanI	GGYRCC	1 cut(s)	88
BanII	GRGCYC	2 cut(s)	118, 903
BarI	GAAGNNNNNNTAC	2 cut(s)	965, 997
Bbv12I	GWGCWC	2 cut(s)	118, 766
BbvI	GCAGC	3 cut(s)	850, 919, 922
BccI	CCATC	7 cut(s)	233, 389, 446, 470, 598, 656, 788
BceAI	ACGGC	1 cut(s)	114
BclI	TGATCA	1 cut(s)	964
BcoDI	GTCTC	1 cut(s)	360
BfaI	CTAG	1 cut(s)	954
BfmI	CTRYAG	3 cut(s)	549, 864, 982
BisI	GCNGC	3 cut(s)	864, 933, 936
BlsI	GCNGC	3 cut(s)	865, 934, 937
Bme18I	GGWCC	3 cut(s)	143, 338, 751
BmgT120I	GGNCC	3 cut(s)	143, 338, 751
BmiI	GGNNCC	4 cut(s)	90, 145, 752, 900
BmsI	GCATC	2 cut(s)	850, 898
BpmI	CTGGAG	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	65
BsaHI	GRCGYC	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	14, 324
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 172
Bse1I	ACTGG	2 cut(s)	130, 157
Bse3DI	GCAATG	1 cut(s)	792
Bse8I	GATNNNNATC	1 cut(s)	65
BseDI	CCNNGG	2 cut(s)	14, 324
BseGI	GGATG	2 cut(s)	546, 799
BseJI	GATNNNNATC	1 cut(s)	65
BseLI	CCNNNNNNNGG	2 cut(s)	152, 172
BseMI	GCAATG	1 cut(s)	792
BseMII	CTCAG	2 cut(s)	371, 625
BseNI	ACTGG	2 cut(s)	130, 157
BseRI	GAGGAG	1 cut(s)	57
BseSI	GKGCMC	1 cut(s)	93
BseXI	GCAGC	3 cut(s)	850, 919, 922
BshFI	GGCC	4 cut(s)	13, 329, 499, 980
BshNI	GGYRCC	1 cut(s)	88
BsiHKAI	GWGCWC	2 cut(s)	118, 766
BslFI	GGGAC	3 cut(s)	129, 143, 764
BslI	CCNNNNNNNGG	2 cut(s)	152, 172
BsmAI	GTCTC	1 cut(s)	360
BsmFI	GGGAC	3 cut(s)	129, 143, 764
BsnI	GGCC	4 cut(s)	13, 329, 499, 980
Bso31I	GGTCTC	1 cut(s)	360
Bsp1286I	GDGCHC	4 cut(s)	93, 118, 766, 903
Bsp143I	GATC	2 cut(s)	66, 964
Bsp19I	CCATGG	1 cut(s)	324
BspANI	GGCC	4 cut(s)	13, 329, 499, 980
BspCNI	CTCAG	2 cut(s)	370, 624
BspHI	TCATGA	1 cut(s)	207
BspLI	GGNNCC	4 cut(s)	90, 145, 752, 900
BspMAI	CTGCAG	1 cut(s)	868
BspT107I	GGYRCC	1 cut(s)	88
BspTNI	GGTCTC	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	792
BsrI	ACTGG	2 cut(s)	130, 157
BssECI	CCNNGG	2 cut(s)	14, 324
BssMI	GATC	2 cut(s)	66, 964
BssNI	GRCGYC	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	324
Bst4CI	ACNGT	3 cut(s)	18, 518, 768
Bst6I	CTCTTC	2 cut(s)	669, 674
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	2 cut(s)	501, 930
BstDEI	CTNAG	4 cut(s)	357, 508, 611, 939
BstDSI	CCRYGG	2 cut(s)	14, 324
BstF5I	GGATG	2 cut(s)	546, 799
BstHHI	GCGC	1 cut(s)	636
BstKTI	GATC	2 cut(s)	69, 967
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	2 cut(s)	66, 964
BstMWI	GCNNNNNNNGC	1 cut(s)	842
BstNSI	RCATGY	2 cut(s)	319, 407
BstSFI	CTRYAG	3 cut(s)	549, 864, 982
BstSLI	GKGCMC	1 cut(s)	93
BstV1I	GCAGC	3 cut(s)	850, 919, 922
BsuRI	GGCC	4 cut(s)	13, 329, 499, 980
BtgI	CCRYGG	2 cut(s)	14, 324
BtsCI	GGATG	2 cut(s)	546, 799
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	5 cut(s)	150, 381, 764, 774, 903
Cac8I	GCNNGC	2 cut(s)	501, 930
CciI	TCATGA	1 cut(s)	207
CfoI	GCGC	1 cut(s)	636
Cfr13I	GGNCC	3 cut(s)	143, 338, 751
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	123
CviAII	CATG	7 cut(s)	83, 208, 302, 316, 325, 404, 433
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	4 cut(s)	357, 508, 611, 939
DpnI	GATC	2 cut(s)	68, 966
DpnII	GATC	2 cut(s)	66, 964
EaeI	YGGCCR	2 cut(s)	327, 497
Eam1104I	CTCTTC	2 cut(s)	669, 674
EarI	CTCTTC	2 cut(s)	669, 674
Ecl136II	GAGCTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	324
Eco147I	AGGCCT	1 cut(s)	980
Eco24I	GRGCYC	2 cut(s)	118, 903
Eco31I	GGTCTC	1 cut(s)	360
Eco47I	GGWCC	3 cut(s)	143, 338, 751
Eco53kI	GAGCTC	1 cut(s)	116
EcoICRI	GAGCTC	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	751
EcoT14I	CCWWGG	1 cut(s)	324
EcoT38I	GRGCYC	2 cut(s)	118, 903
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	7 cut(s)	86, 211, 305, 319, 328, 407, 436
FaqI	GGGAC	3 cut(s)	129, 143, 764
FatI	CATG	7 cut(s)	82, 207, 301, 315, 324, 403, 432
FbaI	TGATCA	1 cut(s)	964
Fnu4HI	GCNGC	3 cut(s)	864, 933, 936
FokI	GGATG	2 cut(s)	553, 806
FriOI	GRGCYC	2 cut(s)	118, 903
Fsp4HI	GCNGC	3 cut(s)	864, 933, 936
FspBI	CTAG	1 cut(s)	954
GlaI	GCGC	1 cut(s)	635
GluI	GCNGC	3 cut(s)	864, 933, 936
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	4 cut(s)	13, 329, 499, 980
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	636
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	7 cut(s)	86, 211, 305, 319, 328, 407, 436
Hin6I	GCGC	1 cut(s)	634
HinP1I	GCGC	1 cut(s)	634
HinfI	GANTC	2 cut(s)	254, 554
HphI	GGTGA	3 cut(s)	140, 233, 491
Hpy188I	TCNGA	5 cut(s)	113, 342, 614, 624, 999
Hpy188III	TCNNGA	7 cut(s)	26, 208, 491, 521, 586, 641, 968
HpyAV	CCTTC	3 cut(s)	47, 412, 970
HpyCH4III	ACNGT	3 cut(s)	18, 518, 768
HpyCH4V	TGCA	2 cut(s)	785, 866
HpyF10VI	GCNNNNNNNGC	1 cut(s)	842
HpyF3I	CTNAG	4 cut(s)	357, 508, 611, 939
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	7 cut(s)	86, 211, 305, 319, 328, 407, 436
HspAI	GCGC	1 cut(s)	634
Ksp22I	TGATCA	1 cut(s)	964
Kzo9I	GATC	2 cut(s)	66, 964
LmnI	GCTCC	3 cut(s)	761, 898, 925
Lsp1109I	GCAGC	3 cut(s)	850, 919, 922
LweI	GCATC	2 cut(s)	850, 898
MaeI	CTAG	1 cut(s)	954
MaeIII	GTNAC	2 cut(s)	479, 705
MalI	GATC	2 cut(s)	68, 966
MboI	GATC	2 cut(s)	66, 964
MboII	GAAGA	6 cut(s)	290, 686, 691, 955, 958, 985
MhlI	GDGCHC	4 cut(s)	93, 118, 766, 903
MlsI	TGGCCA	2 cut(s)	329, 499
MluCI	AATT	8 cut(s)	106, 272, 286, 293, 463, 666, 737, 743
MluNI	TGGCCA	2 cut(s)	329, 499
MlyI	GAGTC	1 cut(s)	263
MnlI	CCTC	4 cut(s)	3, 35, 173, 783
Mox20I	TGGCCA	2 cut(s)	329, 499
MscI	TGGCCA	2 cut(s)	329, 499
MseI	TTAA	2 cut(s)	810, 849
MslI	CAYNNNNRTG	2 cut(s)	393, 437
Msp20I	TGGCCA	2 cut(s)	329, 499
MwoI	GCNNNNNNNGC	1 cut(s)	842
NcoI	CCATGG	1 cut(s)	324
NdeII	GATC	2 cut(s)	66, 964
NlaIII	CATG	7 cut(s)	86, 211, 305, 319, 328, 407, 436
NlaIV	GGNNCC	4 cut(s)	90, 145, 752, 900
NmuCI	GTSAC	2 cut(s)	479, 705
NspI	RCATGY	2 cut(s)	319, 407
PagI	TCATGA	1 cut(s)	207
PceI	AGGCCT	1 cut(s)	980
PciI	ACATGT	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	554
PflFI	GACNNNGTC	1 cut(s)	828
PkrI	GCNGC	3 cut(s)	865, 934, 937
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
PpuMI	RGGWCCY	1 cut(s)	751
PscI	ACATGT	1 cut(s)	403
Psp124BI	GAGCTC	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	751
PspN4I	GGNNCC	4 cut(s)	90, 145, 752, 900
PspPI	GGNCC	3 cut(s)	143, 338, 751
PspPPI	RGGWCCY	1 cut(s)	751
PstI	CTGCAG	1 cut(s)	868
PsyI	GACNNNGTC	1 cut(s)	828
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
RseI	CAYNNNNRTG	2 cut(s)	393, 437
SacI	GAGCTC	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	810, 849
SatI	GCNGC	3 cut(s)	864, 933, 936
Sau3AI	GATC	2 cut(s)	66, 964
Sau96I	GGNCC	3 cut(s)	143, 338, 751
SchI	GAGTC	1 cut(s)	263
SduI	GDGCHC	4 cut(s)	93, 118, 766, 903
SfaNI	GCATC	2 cut(s)	850, 898
SfcI	CTRYAG	3 cut(s)	549, 864, 982
SinI	GGWCC	3 cut(s)	143, 338, 751
SmiMI	CAYNNNNRTG	2 cut(s)	393, 437
Sse9I	AATT	8 cut(s)	106, 272, 286, 293, 463, 666, 737, 743
SseBI	AGGCCT	1 cut(s)	980
SspI	AATATT	1 cut(s)	581
SspMI	CTAG	1 cut(s)	954
SstI	GAGCTC	1 cut(s)	118
StuI	AGGCCT	1 cut(s)	980
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	3 cut(s)	18, 518, 768
TaqI	TCGA	3 cut(s)	69, 642, 823
TasI	AATT	8 cut(s)	106, 272, 286, 293, 463, 666, 737, 743
TatI	WGTACW	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	2 cut(s)	810, 849
Tru9I	TTAA	2 cut(s)	810, 849
TscAI	CASTG	5 cut(s)	157, 388, 771, 781, 910
TseFI	GTSAC	2 cut(s)	479, 705
TseI	GCWGC	3 cut(s)	863, 932, 935
Tsp45I	GTSAC	2 cut(s)	479, 705
TspDTI	ATGAA	6 cut(s)	176, 196, 297, 318, 591, 687
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	5 cut(s)	157, 388, 771, 781, 910
Tth111I	GACNNNGTC	1 cut(s)	828
VpaK11BI	GGWCC	3 cut(s)	143, 338, 751
XapI	RAATTY	3 cut(s)	106, 272, 286
XceI	RCATGY	2 cut(s)	319, 407
XspI	CTAG	1 cut(s)	954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.