Rh2BG181500

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002978
Physical Location & Seq
Forward (+)
16184112 .. 16187263
3152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG181500.1

Sequence Viewer

Length: 1104 bp
ATGGTGAGACCAAGATGTTACCTTGACATAACCATAGGAGGAGAACCGGAAGGAAGAATCGTCATTGAGCTCTACAACGACGTCGTTCCGAAAACCGCGGAGAATTTCAGAGCGCTGTGCACCGGTGAGAAGGGCATTGCTCCCAACACCGGCGTCCCTCTTCATTTCAAGGGGGTTGGTTTCCACCGCATTATCAAAGGGTTTATGATACAAGGGGGAGACATTTCAGCTGGGAATGGGAGTGGGGGAGAGTCGATTTACGGCTCGAAATTCGAGGATGAGAATTTTGAGATTAAGCATGAGAGGAAGGGGATGGTGTCCATGGCGAATACTGGGCCGGATAGTAATGGCTCACAGTTCTTTATTACCACTACTCGGACTCCCCATCTGGATGGGAAGCATGTTGTGTTTGGGAGGGTGATTAAGGGAATGGGGGTGGCCAGGTCCATTGAGCATGTGAGTACTAAAGATGATGGGGAGCATTTTCCCACTCAGGAGGTTTTGATTGCGGATTGTGGGGAACTTGCTGAGGGGGCTGATGATGGGGTGTGTAATTTTTTTAAGGATGGGGATGTTTATCCTGATTGGCCCGTTGATCTTGATGCGAAACATGAGGAGATATCTTGGTGGGTTAGTGCTGTGAATGTGATTAAGGCACTTGGAAATGAGCAGTTCAAGAAGCAAGACTATAAGATGGCCCTGAGAAAGTATCGCAAGGCTTTGCGCTACTTGGATCTGTGCTGGGAGTTGGAAGATATCAATGAAGAGAACAGCTCCTCTCTGCGGCAGACAAAGTCTCAGATATTTACTAATAGCTCAGCTTGTAGATTGAAATTAGGAGACCTAGAAGGAGCATTGTTGGATACAGACTTTGCATTGCGTGATTGGGAGGACAATGTGAAGGCGTTGTTTCGCCAAGGCCAGACATATATGGCACTAAATGACATCGACTCTGCGGTTGAAAGCTTCAAGAAGGCACTGGAATTGGAACCAAATGATGGGGGAATTAAGAAAGAGCTTCTGGTTGCTAAAAAGAAGGTAGCTGATAGGATCATAAGAGGCTGCACATTCTTAATCGGCACTATGAAATACCAGGCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04217 ko04218 map04217 map04218
Pfam Domains
Protein Families
Pro_isomerase TPR_1 TPR_2

Protein Analysis

367

Amino Acids

40.89

Weight (kDa)

5.52

Isoelectric Point (pI)

24.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 7 - 173 1.2e-49 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
TPR_1 PF00515 300 - 333 2e-08 Tetratricopeptide repeat
TPR_2 PF07719 301 - 333 1.2e-07 Tetratricopeptide repeat
TPR_8 PF13181 301 - 333 1.7e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 84
AccB7I CCANNNNNTGG 1 cut(s) 998
AccII CGCG 1 cut(s) 98
AciI CCGC 6 cut(s) 96, 98, 187, 509, 784, 956
AclWI GGATC 2 cut(s) 741, 1058
AcoI YGGCCR 1 cut(s) 438
AcsI RAATTY 3 cut(s) 103, 269, 283
AcyI GRCGYC 2 cut(s) 81, 153
AfaI GTAC 1 cut(s) 463
AfeI AGCGCT 1 cut(s) 114
AfiI CCNNNNNNNGG 4 cut(s) 149, 375, 783, 998
AgeI ACCGGT 1 cut(s) 122
AgsI TTSAA 5 cut(s) 169, 676, 832, 962, 970
AjnI CCWGG 2 cut(s) 440, 1092
AluBI AGCT 8 cut(s) 70, 230, 774, 816, 821, 966, 1018, 1043
AluI AGCT 8 cut(s) 70, 230, 774, 816, 821, 966, 1018, 1043
Alw21I GWGCWC 2 cut(s) 72, 122
Alw26I GTCTC 3 cut(s) 213, 801, 834
Alw44I GTGCAC 1 cut(s) 118
AlwI GGATC 2 cut(s) 741, 1058
Aor51HI AGCGCT 1 cut(s) 114
AoxI GGCC 5 cut(s) 335, 438, 587, 696, 919
ApaLI GTGCAC 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 1062
ApoI RAATTY 3 cut(s) 103, 269, 283
AsiGI ACCGGT 1 cut(s) 122
AspLEI GCGC 2 cut(s) 115, 726
AspS9I GGNCC 4 cut(s) 335, 444, 588, 697
AsuHPI GGTGA 3 cut(s) 16, 137, 430
AvaII GGWCC 1 cut(s) 444
BaeGI GKGCMC 1 cut(s) 122
BalI TGGCCA 1 cut(s) 440
BanII GRGCYC 1 cut(s) 72
Bbv12I GWGCWC 2 cut(s) 72, 122
BbvCI CCTCAGC 1 cut(s) 528
BbvI GCAGC 1 cut(s) 1049
BccI CCATC 8 cut(s) 307, 386, 393, 467, 536, 560, 688, 992
BceAI ACGGC 1 cut(s) 277
BciT130I CCWGG 2 cut(s) 442, 1094
BciVI GTATCC 1 cut(s) 856
BcoDI GTCTC 3 cut(s) 213, 801, 834
BfaI CTAG 1 cut(s) 845
BfoI RGCGCY 1 cut(s) 116
BfuI GTATCC 1 cut(s) 856
BisI GCNGC 2 cut(s) 785, 1063
BlpI GCTNAGC 1 cut(s) 817
BlsI GCNGC 2 cut(s) 786, 1064
BmcAI AGTACT 1 cut(s) 463
Bme1390I CCNGG 2 cut(s) 442, 1094
Bme18I GGWCC 1 cut(s) 444
BmgT120I GGNCC 4 cut(s) 335, 444, 588, 697
BmiI GGNNCC 1 cut(s) 990
BmrFI CCNGG 2 cut(s) 442, 1094
BmrI ACTGGG 1 cut(s) 342
BmsI GCATC 1 cut(s) 592
BmuI ACTGGG 1 cut(s) 342
BplI GAGNNNNNCTC 2 cut(s) 758, 790
Bpu10I CCTNAGC 1 cut(s) 528
Bpu1102I GCTNAGC 1 cut(s) 817
BsaBI GATNNNNATC 1 cut(s) 576
BsaHI GRCGYC 2 cut(s) 81, 153
BsaI GGTCTC 1 cut(s) 834
BsaJI CCNNGG 3 cut(s) 96, 321, 916
BsaWI WCCGGW 2 cut(s) 46, 122
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bsc4I CCNNNNNNNGG 4 cut(s) 149, 375, 783, 998
Bse118I RCCGGY 2 cut(s) 122, 149
Bse1I ACTGG 2 cut(s) 337, 984
Bse3DI GCAATG 2 cut(s) 135, 875
Bse8I GATNNNNATC 1 cut(s) 576
BseBI CCWGG 2 cut(s) 442, 1094
BseDI CCNNGG 3 cut(s) 96, 321, 916
BseGI GGATG 5 cut(s) 283, 318, 397, 571, 577
BseJI GATNNNNATC 1 cut(s) 576
BseLI CCNNNNNNNGG 4 cut(s) 149, 375, 783, 998
BseMI GCAATG 2 cut(s) 135, 875
BseMII CTCAG 5 cut(s) 506, 519, 692, 812, 831
BseNI ACTGG 2 cut(s) 337, 984
BseRI GAGGAG 3 cut(s) 54, 629, 766
BseSI GKGCMC 1 cut(s) 122
BseXI GCAGC 1 cut(s) 1049
BseYI CCCAGC 2 cut(s) 230, 741
BsgI GTGCAG 1 cut(s) 1048
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 5 cut(s) 337, 440, 589, 698, 921
BshTI ACCGGT 1 cut(s) 122
BsiHKAI GWGCWC 2 cut(s) 72, 122
BsiSI CCGG 4 cut(s) 47, 123, 150, 338
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 4 cut(s) 149, 375, 783, 998
BsmAI GTCTC 3 cut(s) 213, 801, 834
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 5 cut(s) 337, 440, 589, 698, 921
Bso31I GGTCTC 1 cut(s) 834
Bsp1286I GDGCHC 2 cut(s) 72, 122
Bsp143I GATC 3 cut(s) 595, 733, 1050
Bsp1720I GCTNAGC 1 cut(s) 817
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 6 cut(s) 96, 98, 187, 509, 784, 956
BspANI GGCC 5 cut(s) 337, 440, 589, 698, 921
BspCNI CTCAG 5 cut(s) 505, 520, 693, 811, 830
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 990
BspPI GGATC 2 cut(s) 741, 1058
BspTNI GGTCTC 1 cut(s) 834
BsrDI GCAATG 2 cut(s) 135, 875
BsrFI RCCGGY 2 cut(s) 122, 149
BsrI ACTGG 2 cut(s) 337, 984
BssAI RCCGGY 2 cut(s) 122, 149
BssECI CCNNGG 3 cut(s) 96, 321, 916
BssMI GATC 3 cut(s) 595, 733, 1050
BssNI GRCGYC 2 cut(s) 81, 153
BssT1I CCWWGG 2 cut(s) 321, 916
Bst2UI CCWGG 2 cut(s) 442, 1094
Bst4CI ACNGT 1 cut(s) 357
Bst6I CTCTTC 2 cut(s) 165, 759
BstACI GRCGYC 2 cut(s) 81, 153
BstDEI CTNAG 5 cut(s) 492, 528, 701, 798, 817
BstDSI CCRYGG 2 cut(s) 96, 321
BstF5I GGATG 5 cut(s) 283, 318, 397, 571, 577
BstFNI CGCG 1 cut(s) 98
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 2 cut(s) 115, 726
BstKTI GATC 3 cut(s) 598, 736, 1053
BstMAI GTCTC 3 cut(s) 213, 801, 834
BstMBI GATC 3 cut(s) 595, 733, 1050
BstMWI GCNNNNNNNGC 1 cut(s) 533
BstNI CCWGG 2 cut(s) 442, 1094
BstNSI RCATGY 2 cut(s) 404, 458
BstSCI CCNGG 2 cut(s) 440, 1092
BstSLI GKGCMC 1 cut(s) 122
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 1049
BstX2I RGATCY 1 cut(s) 733
BstXI CCANNNNNNTGG 1 cut(s) 392
BstYI RGATCY 1 cut(s) 733
BsuI GTATCC 1 cut(s) 856
BsuRI GGCC 5 cut(s) 337, 440, 589, 698, 921
BtgI CCRYGG 2 cut(s) 96, 321
BtsCI GGATG 5 cut(s) 283, 318, 397, 571, 577
BtsIMutI CAGTG 1 cut(s) 977
CfoI GCGC 2 cut(s) 115, 726
Cfr10I RCCGGY 2 cut(s) 122, 149
Cfr13I GGNCC 4 cut(s) 335, 444, 588, 697
Cfr42I CCGCGG 1 cut(s) 99
CseI GACGC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 462
CspAI ACCGGT 1 cut(s) 122
CviAII CATG 5 cut(s) 299, 322, 401, 455, 611
CviQI GTAC 1 cut(s) 462
DdeI CTNAG 5 cut(s) 492, 528, 701, 798, 817
DpnI GATC 3 cut(s) 597, 735, 1052
DpnII GATC 3 cut(s) 595, 733, 1050
EaeI YGGCCR 1 cut(s) 438
Eam1104I CTCTTC 2 cut(s) 165, 759
EarI CTCTTC 2 cut(s) 165, 759
Ecl136II GAGCTC 1 cut(s) 70
Eco130I CCWWGG 2 cut(s) 321, 916
Eco24I GRGCYC 1 cut(s) 72
Eco31I GGTCTC 1 cut(s) 834
Eco32I GATATC 2 cut(s) 621, 757
Eco47I GGWCC 1 cut(s) 444
Eco47III AGCGCT 1 cut(s) 114
Eco53kI GAGCTC 1 cut(s) 70
EcoICRI GAGCTC 1 cut(s) 70
EcoRII CCWGG 2 cut(s) 440, 1092
EcoRV GATATC 2 cut(s) 621, 757
EcoT14I CCWWGG 2 cut(s) 321, 916
EcoT38I GRGCYC 1 cut(s) 72
ErhI CCWWGG 2 cut(s) 321, 916
FaeI CATG 5 cut(s) 302, 325, 404, 458, 614
FaqI GGGAC 1 cut(s) 140
FatI CATG 5 cut(s) 298, 321, 400, 454, 610
Fnu4HI GCNGC 2 cut(s) 785, 1063
FokI GGATG 5 cut(s) 290, 325, 404, 578, 584
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 2 cut(s) 785, 1063
FspBI CTAG 1 cut(s) 845
GlaI GCGC 2 cut(s) 114, 725
GluI GCNGC 2 cut(s) 785, 1063
GsaI CCCAGC 2 cut(s) 234, 745
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 5 cut(s) 337, 440, 589, 698, 921
HapII CCGG 4 cut(s) 47, 123, 150, 338
HgaI GACGC 1 cut(s) 142
HhaI GCGC 2 cut(s) 115, 726
Hin1I GRCGYC 2 cut(s) 81, 153
Hin1II CATG 5 cut(s) 302, 325, 404, 458, 614
Hin6I GCGC 2 cut(s) 113, 724
HinP1I GCGC 2 cut(s) 113, 724
HindIII AAGCTT 1 cut(s) 964
HinfI GANTC 4 cut(s) 57, 251, 379, 950
HpaII CCGG 4 cut(s) 47, 123, 150, 338
HphI GGTGA 3 cut(s) 16, 137, 430
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 4 cut(s) 90, 110, 378, 801
Hpy188III TCNNGA 6 cut(s) 389, 494, 581, 599, 676, 970
Hpy8I GTNNAC 1 cut(s) 120
Hpy99I CGWCG 2 cut(s) 83, 86
HpyAV CCTTC 7 cut(s) 44, 124, 301, 842, 895, 967, 1030
HpyCH4III ACNGT 1 cut(s) 357
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 3 cut(s) 120, 875, 1065
HpyF10VI GCNNNNNNNGC 1 cut(s) 533
HpyF3I CTNAG 5 cut(s) 492, 528, 701, 798, 817
HpySE526I ACGT 1 cut(s) 81
Hsp92I GRCGYC 2 cut(s) 81, 153
Hsp92II CATG 5 cut(s) 302, 325, 404, 458, 614
HspAI GCGC 2 cut(s) 113, 724
KspI CCGCGG 1 cut(s) 99
Kzo9I GATC 3 cut(s) 595, 733, 1050
LmnI GCTCC 4 cut(s) 145, 478, 779, 851
Lsp1109I GCAGC 1 cut(s) 1049
LweI GCATC 1 cut(s) 592
MaeI CTAG 1 cut(s) 845
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 17
MalI GATC 3 cut(s) 597, 735, 1052
MboI GATC 3 cut(s) 595, 733, 1050
MboII GAAGA 4 cut(s) 66, 152, 764, 776
MflI RGATCY 1 cut(s) 733
MhlI GDGCHC 2 cut(s) 72, 122
MlsI TGGCCA 1 cut(s) 440
MluCI AATT 7 cut(s) 103, 269, 283, 553, 833, 983, 1005
MluNI TGGCCA 1 cut(s) 440
MlyI GAGTC 3 cut(s) 260, 373, 944
MmeI TCCRAC 2 cut(s) 729, 840
Mox20I TGGCCA 1 cut(s) 440
MscI TGGCCA 1 cut(s) 440
MseI TTAA 6 cut(s) 294, 423, 561, 651, 1008, 1073
MslI CAYNNNNRTG 1 cut(s) 390
Msp20I TGGCCA 1 cut(s) 440
MspA1I CMGCKG 2 cut(s) 98, 230
MspI CCGG 4 cut(s) 47, 123, 150, 338
MspR9I CCNGG 2 cut(s) 442, 1094
MvaI CCWGG 2 cut(s) 442, 1094
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 533
NcoI CCATGG 1 cut(s) 321
NdeII GATC 3 cut(s) 595, 733, 1050
NlaIII CATG 5 cut(s) 302, 325, 404, 458, 614
NlaIV GGNNCC 1 cut(s) 990
NspI RCATGY 2 cut(s) 404, 458
PfeI GAWTC 1 cut(s) 57
PflFI GACNNNGTC 1 cut(s) 793
PflMI CCANNNNNTGG 1 cut(s) 998
PinAI ACCGGT 1 cut(s) 122
PkrI GCNGC 2 cut(s) 786, 1064
PleI GAGTC 3 cut(s) 259, 373, 944
PpsI GAGTC 3 cut(s) 259, 373, 944
Psp124BI GAGCTC 1 cut(s) 72
Psp6I CCWGG 2 cut(s) 440, 1092
PspFI CCCAGC 2 cut(s) 230, 741
PspGI CCWGG 2 cut(s) 440, 1092
PspN4I GGNNCC 1 cut(s) 990
PspPI GGNCC 4 cut(s) 335, 444, 588, 697
PsuI RGATCY 1 cut(s) 733
PsyI GACNNNGTC 1 cut(s) 793
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 1 cut(s) 463
RsaNI GTAC 1 cut(s) 462
RseI CAYNNNNRTG 1 cut(s) 390
SacI GAGCTC 1 cut(s) 72
SacII CCGCGG 1 cut(s) 99
SaqAI TTAA 6 cut(s) 294, 423, 561, 651, 1008, 1073
SatI GCNGC 2 cut(s) 785, 1063
Sau3AI GATC 3 cut(s) 595, 733, 1050
Sau96I GGNCC 4 cut(s) 335, 444, 588, 697
ScaI AGTACT 1 cut(s) 463
SchI GAGTC 3 cut(s) 260, 373, 944
ScrFI CCNGG 2 cut(s) 442, 1094
SduI GDGCHC 2 cut(s) 72, 122
SfaNI GCATC 1 cut(s) 592
Sfr303I CCGCGG 1 cut(s) 99
SgrAI CRCCGGYG 2 cut(s) 122, 149
SgrBI CCGCGG 1 cut(s) 99
SinI GGWCC 1 cut(s) 444
SmiMI CAYNNNNRTG 1 cut(s) 390
Sse9I AATT 7 cut(s) 103, 269, 283, 553, 833, 983, 1005
SsiI CCGC 6 cut(s) 96, 98, 187, 509, 784, 956
SspMI CTAG 1 cut(s) 845
SstI GAGCTC 1 cut(s) 72
StyD4I CCNGG 2 cut(s) 440, 1092
StyI CCWWGG 2 cut(s) 321, 916
TaaI ACNGT 1 cut(s) 357
TaiI ACGT 1 cut(s) 84
TaqI TCGA 4 cut(s) 254, 266, 273, 948
TasI AATT 7 cut(s) 103, 269, 283, 553, 833, 983, 1005
TatI WGTACW 1 cut(s) 461
TauI GCSGC 1 cut(s) 787
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 6 cut(s) 294, 423, 561, 651, 1008, 1073
Tru9I TTAA 6 cut(s) 294, 423, 561, 651, 1008, 1073
TscAI CASTG 1 cut(s) 984
TseI GCWGC 1 cut(s) 1062
TspDTI ATGAA 3 cut(s) 152, 777, 1100
TspRI CASTG 1 cut(s) 984
Tth111I GACNNNGTC 1 cut(s) 793
Van91I CCANNNNNTGG 1 cut(s) 998
VneI GTGCAC 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 444
XapI RAATTY 3 cut(s) 103, 269, 283
XceI RCATGY 2 cut(s) 404, 458
XspI CTAG 1 cut(s) 845
ZraI GACGTC 1 cut(s) 82
ZrmI AGTACT 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.