Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002978

Physical Location & Seq

Genomic Coordinates Reverse (-)

6877774 .. 6880898

Gene Structure 3125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G15790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGGTAGGTCAAAGTGTTTCATGGACATTAGCATTGGAGGTGAGCTTGAAGGAAGGATTGTTATTGAGCTTTACGATGATGTTGTTCCCAAAACCGCTGAGAATTTTCGATTACTCTGTACCGGTGAGAAGGGTTTAGGTCCAAATACTGGTGTACCTCTCCATTACAAGGGGAATCGATTTCATCGTGTTATCAAGGGGTTTATGATACAAGGTGGGGATATATCAGCTAATGATGGTACTGGTGGTGAGTCTATCTATGGCTTGAAGTTTGACGATGAGAATTTTGAGCTGAAACATGAGAGGAAAGGGATGCTCTCTATGGCTAACTCTGGTCCCAACACTAATGGCTCTCAGTTTTTCATTACGACAACTCGCACTTCTCATTTAGATGGGAAACATGTTGTGTTTGGAAGGGTTACGAAAGGAATGGGTGTTGTTCGGTCGATTGAGCATGTTAGCATAGAGGAACAGTCTTGTCCTTCTCAGGATGTTGTGATCCATGACTGTGGAGAAATCCCTGAGGGTGCAGATGATGGGATTTGTGACTTTTTCAAGGATGGTGATGTGTACCCTGACTGGCCTATTGATCTGAATGAAAGCCCAGCTGAGTTATCTTGGTGGATGGAGACTGTTGATTTTGTCAAGGCTCATGGGAATGAGCACTTTAAGAAACAAGACTATAAGATGGCTCTTAGAAAGTACCGTAAGGCTTTACGCTATCTGGATATTTGCTGGGAGAAAGAGGGCATTGATGAAGAGACGAGTACTGCCTTGCGTAAGACAAAGTCGCAGATCTTCACTAATAGTGCTGCCTGCAAACTCAAATTCGGAGATGCAAAAGGAGCGTTGTTGGACACTGAATTTGCTATGCGTGATGAAGATAACAATGTTAAAGCATTGTTTCGACAAGGCCAGGCATACATGGCTCTTAATAACGTCGATGCTGCTGCTGAAAGCCTTGAGAAAGCTCTTCAATTCGAACCTAATGACGCTGGTATCAAGAAAGAATATGCTGCTGTTATGAAAAAGATTGCCTTTAGAGACAACGAAGAGAAAAAGCAGTACCGCAAAATGTTCGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000413 GO:0003006 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010022 GO:0010050 GO:0010073 GO:0010582 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090567 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04217 ko04218 map04217 map04218

Pfam Domains

Protein Families

Pro_isomerase TPR_1 TPR_2

Protein Analysis

361

Amino Acids

40.61

Weight (kDa)

5.61

Isoelectric Point (pI)

32.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	7 - 171	3.6e-51	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
TPR_CcmH_CycH	PF23914	292 - 343	7.7e-06	Cytochrome c-type biogenesis protein H TPR domain
TPR_1	PF00515	298 - 331	1.9e-06	Tetratricopeptide repeat
TPR_2	PF07719	299 - 331	9.1e-07	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15790
fragaria_vesca	FvH4_1g15560 FvH4_1g15560 FvH4_1g15560 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830
malus_domestica	MD02G1167800.v1.1 MD05G1075200.v1.1 MD15G1280000.v1.1
prunus_persica	Prupe.7G137400_v2.0.a1 Prupe.8G116600_v2.0.a1 Prupe.8G116600_v2.0.a1
pyrus_communis	pycom02g13470 pycom05g06840
rosa_chinensis	RchiOBHm_Chr2g0104891 RchiOBHm_Chr6g0259041
rosa_laevigata	RLG00000014561 RLG00000017365
rosa_multiflora	Rmu_sc0003419.1_g000006 Rmu_ssc0000050.1_g000113
rosa_roxburghii	Rroxscaffold_2G00138700 Rroxscaffold_7G00206290 Rroxscaffold_7G00206440
rosa_rugosa	Rorug02G0123600 Rorug02G0123700 Rorug05G0585100 Rorug05G0585200
rosa_samantha	Rh2AG173900 Rh2BG181500 Rh2CG178800 Rh2DG180200 Rh6AG101400
rosa_wichuraiana	Rw2G013680 Rw6G008820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	149
AciI	CCGC	2 cut(s)	96, 1069
AclWI	GGATC	1 cut(s)	493
AcsI	RAATTY	4 cut(s)	103, 283, 827, 863
AfaI	GTAC	7 cut(s)	121, 156, 241, 572, 704, 769, 1067
AfiI	CCNNNNNNNGG	2 cut(s)	149, 169
AflIII	ACRYGT	1 cut(s)	400
AgeI	ACCGGT	1 cut(s)	122
AgsI	TTSAA	4 cut(s)	50, 268, 556, 977
AjnI	CCWGG	1 cut(s)	915
AluBI	AGCT	6 cut(s)	46, 70, 230, 292, 608, 971
AluI	AGCT	6 cut(s)	46, 70, 230, 292, 608, 971
Alw21I	GWGCWC	1 cut(s)	666
Alw26I	GTCTC	3 cut(s)	623, 755, 1038
AlwI	GGATC	1 cut(s)	493
AoxI	GGCC	2 cut(s)	581, 913
ApeKI	GCWGC	4 cut(s)	812, 947, 950, 1016
ApoI	RAATTY	4 cut(s)	103, 283, 827, 863
ArsI	GACNNNNNNTTYG	2 cut(s)	848, 880
AsiGI	ACCGGT	1 cut(s)	122
AspS9I	GGNCC	2 cut(s)	140, 335
AsuHPI	GGTGA	4 cut(s)	53, 137, 260, 575
AsuII	TTCGAA	1 cut(s)	981
AvaII	GGWCC	2 cut(s)	140, 335
AxyI	CCTNAGG	1 cut(s)	522
BaeI	ACNNNNGTAYC	4 cut(s)	138, 171, 982, 1015
Bbv12I	GWGCWC	1 cut(s)	666
BbvI	GCAGC	4 cut(s)	799, 934, 937, 1003
BccI	CCATC	6 cut(s)	230, 386, 530, 554, 619, 682
BcgI	CGANNNNNNTGC	3 cut(s)	932, 966, 1060
BciT130I	CCWGG	1 cut(s)	917
BcoDI	GTCTC	3 cut(s)	623, 755, 1038
BglII	AGATCT	1 cut(s)	795
BisI	GCNGC	4 cut(s)	813, 948, 951, 1017
BlsI	GCNGC	4 cut(s)	814, 949, 952, 1018
BmcAI	AGTACT	1 cut(s)	769
Bme1390I	CCNGG	1 cut(s)	917
Bme18I	GGWCC	2 cut(s)	140, 335
BmgT120I	GGNCC	2 cut(s)	140, 335
BmiI	GGNNCC	1 cut(s)	337
BmrFI	CCNGG	1 cut(s)	917
BmsI	GCATC	3 cut(s)	303, 826, 934
Bpu14I	TTCGAA	1 cut(s)	981
BpuEI	CTTGAG	1 cut(s)	983
Bsa29I	ATCGAT	1 cut(s)	178
BsaWI	WCCGGW	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 169
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	3 cut(s)	154, 247, 584
Bse21I	CCTNAGG	1 cut(s)	522
BseBI	CCWGG	1 cut(s)	917
BseCI	ATCGAT	1 cut(s)	178
BseGI	GGATG	4 cut(s)	318, 496, 565, 630
BseLI	CCNNNNNNNGG	2 cut(s)	149, 169
BseMII	CTCAG	5 cut(s)	90, 368, 500, 513, 600
BseNI	ACTGG	3 cut(s)	154, 247, 584
BseXI	GCAGC	4 cut(s)	799, 934, 937, 1003
BseYI	CCCAGC	2 cut(s)	604, 735
BsgI	GTGCAG	1 cut(s)	549
Bsh1285I	CGRYCG	1 cut(s)	446
BshFI	GGCC	2 cut(s)	583, 915
BshTI	ACCGGT	1 cut(s)	122
BshVI	ATCGAT	1 cut(s)	178
BsiEI	CGRYCG	1 cut(s)	446
BsiHKAI	GWGCWC	1 cut(s)	666
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	2 cut(s)	149, 169
BsmAI	GTCTC	3 cut(s)	623, 755, 1038
BsmBI	CGTCTC	1 cut(s)	755
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	2 cut(s)	583, 915
Bsp119I	TTCGAA	1 cut(s)	981
Bsp1286I	GDGCHC	1 cut(s)	666
Bsp143I	GATC	3 cut(s)	498, 589, 795
BspACI	CCGC	2 cut(s)	96, 1069
BspANI	GGCC	2 cut(s)	583, 915
BspCNI	CTCAG	5 cut(s)	91, 367, 499, 514, 601
BspDI	ATCGAT	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	337
BspPI	GGATC	1 cut(s)	493
BspQI	GCTCTTC	1 cut(s)	978
BspT104I	TTCGAA	1 cut(s)	981
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	3 cut(s)	154, 247, 584
BssAI	RCCGGY	1 cut(s)	122
BssMI	GATC	3 cut(s)	498, 589, 795
Bst2UI	CCWGG	1 cut(s)	917
Bst4CI	ACNGT	4 cut(s)	474, 509, 634, 707
Bst6I	CTCTTC	3 cut(s)	753, 978, 1047
BstBI	TTCGAA	1 cut(s)	981
BstC8I	GCNNGC	1 cut(s)	817
BstDEI	CTNAG	6 cut(s)	99, 354, 486, 522, 609, 695
BstF5I	GGATG	4 cut(s)	318, 496, 565, 630
BstKTI	GATC	3 cut(s)	501, 592, 798
BstMAI	GTCTC	3 cut(s)	623, 755, 1038
BstMBI	GATC	3 cut(s)	498, 589, 795
BstMCI	CGRYCG	1 cut(s)	446
BstMWI	GCNNNNNNNGC	2 cut(s)	845, 926
BstNI	CCWGG	1 cut(s)	917
BstNSI	RCATGY	2 cut(s)	404, 458
BstSCI	CCNGG	1 cut(s)	915
BstV1I	GCAGC	4 cut(s)	799, 934, 937, 1003
BstX2I	RGATCY	1 cut(s)	795
BstXI	CCANNNNNNTGG	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	795
Bsu15I	ATCGAT	1 cut(s)	178
Bsu36I	CCTNAGG	1 cut(s)	522
BsuRI	GGCC	2 cut(s)	583, 915
BsuTUI	ATCGAT	1 cut(s)	178
BtsCI	GGATG	4 cut(s)	318, 496, 565, 630
BtsIMutI	CAGTG	1 cut(s)	858
Cac8I	GCNNGC	1 cut(s)	817
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	140, 335
ClaI	ATCGAT	1 cut(s)	178
CseI	GACGC	1 cut(s)	1001
Csp6I	GTAC	7 cut(s)	120, 155, 240, 571, 703, 768, 1066
CspAI	ACCGGT	1 cut(s)	122
CviAII	CATG	7 cut(s)	22, 299, 401, 455, 503, 653, 925
CviQI	GTAC	7 cut(s)	120, 155, 240, 571, 703, 768, 1066
DdeI	CTNAG	6 cut(s)	99, 354, 486, 522, 609, 695
DpnI	GATC	3 cut(s)	500, 591, 797
DpnII	GATC	3 cut(s)	498, 589, 795
Eam1104I	CTCTTC	3 cut(s)	753, 978, 1047
EarI	CTCTTC	3 cut(s)	753, 978, 1047
Eco47I	GGWCC	2 cut(s)	140, 335
Eco81I	CCTNAGG	1 cut(s)	522
EcoRII	CCWGG	1 cut(s)	915
Esp3I	CGTCTC	1 cut(s)	755
FaeI	CATG	7 cut(s)	25, 302, 404, 458, 506, 656, 928
FalI	AAGNNNNNCTT	2 cut(s)	1022, 1054
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	7 cut(s)	21, 298, 400, 454, 502, 652, 924
Fnu4HI	GCNGC	4 cut(s)	813, 948, 951, 1017
FokI	GGATG	4 cut(s)	325, 503, 572, 637
Fsp4HI	GCNGC	4 cut(s)	813, 948, 951, 1017
GluI	GCNGC	4 cut(s)	813, 948, 951, 1017
GsaI	CCCAGC	2 cut(s)	608, 739
HaeIII	GGCC	2 cut(s)	583, 915
HapII	CCGG	1 cut(s)	123
HgaI	GACGC	1 cut(s)	1001
Hin1II	CATG	7 cut(s)	25, 302, 404, 458, 506, 656, 928
HinfI	GANTC	2 cut(s)	175, 251
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	4 cut(s)	53, 137, 260, 575
Hpy166II	GTNNAC	2 cut(s)	155, 571
Hpy188I	TCNGA	2 cut(s)	594, 833
Hpy188III	TCNNGA	3 cut(s)	488, 725, 1003
Hpy8I	GTNNAC	2 cut(s)	155, 571
Hpy99I	CGWCG	1 cut(s)	944
HpyAV	CCTTC	5 cut(s)	44, 48, 124, 408, 492
HpyCH4III	ACNGT	4 cut(s)	474, 509, 634, 707
HpyCH4IV	ACGT	1 cut(s)	939
HpyCH4V	TGCA	3 cut(s)	530, 819, 839
HpyF10VI	GCNNNNNNNGC	2 cut(s)	845, 926
HpyF3I	CTNAG	6 cut(s)	99, 354, 486, 522, 609, 695
HpySE526I	ACGT	1 cut(s)	939
Hsp92II	CATG	7 cut(s)	25, 302, 404, 458, 506, 656, 928
Kzo9I	GATC	3 cut(s)	498, 589, 795
LguI	GCTCTTC	1 cut(s)	978
LmnI	GCTCC	1 cut(s)	845
Lsp1109I	GCAGC	4 cut(s)	799, 934, 937, 1003
LweI	GCATC	3 cut(s)	303, 826, 934
MaeII	ACGT	1 cut(s)	939
MaeIII	GTNAC	2 cut(s)	418, 545
MalI	GATC	3 cut(s)	500, 591, 797
MboI	GATC	3 cut(s)	498, 589, 795
MboII	GAAGA	5 cut(s)	770, 790, 893, 965, 1064
MflI	RGATCY	1 cut(s)	795
MhlI	GDGCHC	1 cut(s)	666
MluCI	AATT	5 cut(s)	103, 283, 827, 863, 977
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	834
MnlI	CCTC	6 cut(s)	32, 168, 297, 460, 517, 739
MseI	TTAA	3 cut(s)	669, 894, 933
MslI	CAYNNNNRTG	3 cut(s)	390, 507, 657
MspA1I	CMGCKG	2 cut(s)	98, 608
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	917
MvaI	CCWGG	1 cut(s)	917
MwoI	GCNNNNNNNGC	2 cut(s)	845, 926
NdeII	GATC	3 cut(s)	498, 589, 795
NlaIII	CATG	7 cut(s)	25, 302, 404, 458, 506, 656, 928
NlaIV	GGNNCC	1 cut(s)	337
NmuCI	GTSAC	1 cut(s)	545
NspI	RCATGY	2 cut(s)	404, 458
NspV	TTCGAA	1 cut(s)	981
PciI	ACATGT	1 cut(s)	400
PciSI	GCTCTTC	1 cut(s)	978
PcsI	WCGNNNNNNNCGW	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	175
PflFI	GACNNNGTC	1 cut(s)	787
PflMI	CCANNNNNTGG	1 cut(s)	149
PinAI	ACCGGT	1 cut(s)	122
PkrI	GCNGC	4 cut(s)	814, 949, 952, 1018
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PscI	ACATGT	1 cut(s)	400
Psp6I	CCWGG	1 cut(s)	915
PspFI	CCCAGC	2 cut(s)	604, 735
PspGI	CCWGG	1 cut(s)	915
PspN4I	GGNNCC	1 cut(s)	337
PspPI	GGNCC	2 cut(s)	140, 335
PsuI	RGATCY	1 cut(s)	795
PsyI	GACNNNGTC	1 cut(s)	787
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	7 cut(s)	121, 156, 241, 572, 704, 769, 1067
RsaNI	GTAC	7 cut(s)	120, 155, 240, 571, 703, 768, 1066
RseI	CAYNNNNRTG	3 cut(s)	390, 507, 657
SapI	GCTCTTC	1 cut(s)	978
SaqAI	TTAA	3 cut(s)	669, 894, 933
SatI	GCNGC	4 cut(s)	813, 948, 951, 1017
Sau3AI	GATC	3 cut(s)	498, 589, 795
Sau96I	GGNCC	2 cut(s)	140, 335
ScaI	AGTACT	1 cut(s)	769
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	917
SduI	GDGCHC	1 cut(s)	666
SfaNI	GCATC	3 cut(s)	303, 826, 934
SfuI	TTCGAA	1 cut(s)	981
SinI	GGWCC	2 cut(s)	140, 335
SmiMI	CAYNNNNRTG	3 cut(s)	390, 507, 657
SmlI	CTYRAG	1 cut(s)	962
SmoI	CTYRAG	1 cut(s)	962
Sse9I	AATT	5 cut(s)	103, 283, 827, 863, 977
SsiI	CCGC	2 cut(s)	96, 1069
StyD4I	CCNGG	1 cut(s)	915
TaaI	ACNGT	4 cut(s)	474, 509, 634, 707
TaiI	ACGT	1 cut(s)	942
TaqI	TCGA	6 cut(s)	109, 178, 446, 907, 942, 981
TaqII	GACCGA	1 cut(s)	432
TasI	AATT	5 cut(s)	103, 283, 827, 863, 977
TatI	WGTACW	1 cut(s)	767
TfiI	GAWTC	1 cut(s)	175
Tru1I	TTAA	3 cut(s)	669, 894, 933
Tru9I	TTAA	3 cut(s)	669, 894, 933
TscAI	CASTG	1 cut(s)	865
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	4 cut(s)	812, 947, 950, 1016
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	7 cut(s)	10, 173, 352, 612, 771, 894, 1040
TspRI	CASTG	1 cut(s)	865
Tth111I	GACNNNGTC	1 cut(s)	787
Van91I	CCANNNNNTGG	1 cut(s)	149
VpaK11BI	GGWCC	2 cut(s)	140, 335
XapI	RAATTY	4 cut(s)	103, 283, 827, 863
XceI	RCATGY	2 cut(s)	404, 458
ZrmI	AGTACT	1 cut(s)	769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.