Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002978

Physical Location & Seq

Genomic Coordinates Reverse (-)

15415669 .. 15419112

Gene Structure 3444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G137400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGTGAGGCCAAGGTGCTACTTGGACATAACCATAGGAGGAGAGCTTGAAGGAAGAATAGTAGTGGAGCTCTACAATGACATTGTGCCCAGAACAGCTGAGAATTTCAGAGCTCTTTGTACTGGTGAGATGGGTATTGGCCCCAACACCAATGTTCCTCTTCACTACAAGGGTGGTTGTTTCCACCGCATTATCAAAGGTTTTATGATACAAGGTGGGGACATTTCGGCTGGAAATGGTAAAGGAGGAGAGTCCATTTACGGTTTGAAGTTTGAAGATGAAAACTTTGATGTAAAGCATGAGAGAAAAGGAATGTTGTCCATGGCCAATTTAGGCCCTGACACCAATGGCTCTCAGTTTTTTATCACAACCACTCGGACTTGTCATCTTGATGGTAAGCATGTTGTGTTTGGGAGGGTGATCAAAGGGATGGGTGTGGTTCGTTCCATTGAGCATGTGACCACTAAAGACGATCACTTTCCTACCCAACAAGTTGTTATTGCGGATTGTGGGCAACTTCCTGAGGGTGCAGATGATGGACTGTGTAACATCTTCAAAGATGGTGATGTCTATCCTGATTGGCCTGCTGACCTTGATGCAAAACCAGAGGCAATTTCTTGGTGGGTCATGGCCGTGGACTCTATTAAGGCCCTTGGAAATGAGCAGTTCAAGAAACAAGACTTTAAGATGGCCCTCAGAAAGTATCGCAAGGCTCTGCGCTACTTGGATGTATGCTGGGAGCTGGAAGATATCGATGAAGAGACAAGCTCCTCTTTGCGGAAGACAAAGTCTCAGATATTTACTAATAGCTCAGCTTGTAGACTGAAATTAGGAGACCTAGATGGAGCATTGTTGGACTCAGACTTTGCATTGCGTGATTGGGAAGCCAATGTGAAGGCTTTGTTTCGCCAAGGCCAGGCCTATATGGCACTTAATGACATCGACTCTGGAGTTGAAAGCTTCAAGAAGGCCCTGGAATTGGAACCAAATGATGGAGGAATTAAGAAAGAGCTTCTGGTTGCTAAAAGGAAGGTTGCTGATAGGTCTGAGCAAGAAAAGAAATCATATTCTAGAATGTTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04217 ko04218 map04217 map04218

Pfam Domains

Protein Families

Pro_isomerase TPR_1 TPR_2

Protein Analysis

362

Amino Acids

40.43

Weight (kDa)

5.84

Isoelectric Point (pI)

27.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15790
fragaria_vesca	FvH4_1g15560 FvH4_1g15560 FvH4_1g15560 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830
malus_domestica	MD02G1167800.v1.1 MD05G1075200.v1.1 MD15G1280000.v1.1
prunus_persica	Prupe.7G137400_v2.0.a1 Prupe.8G116600_v2.0.a1 Prupe.8G116600_v2.0.a1
pyrus_communis	pycom02g13470 pycom05g06840
rosa_chinensis	RchiOBHm_Chr2g0104891 RchiOBHm_Chr6g0259041
rosa_laevigata	RLG00000014561 RLG00000017365
rosa_multiflora	Rmu_sc0003419.1_g000006 Rmu_ssc0000050.1_g000113
rosa_roxburghii	Rroxscaffold_2G00138700 Rroxscaffold_7G00206290 Rroxscaffold_7G00206440
rosa_rugosa	Rorug02G0123600 Rorug02G0123700 Rorug05G0585100 Rorug05G0585200
rosa_samantha	Rh2AG173900 Rh2BG181500 Rh2CG178800 Rh2DG180200 Rh6AG101400
rosa_wichuraiana	Rw2G013680 Rw6G008820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	992
AccI	GTMKAC	1 cut(s)	820
AciI	CCGC	3 cut(s)	187, 503, 778
AcoI	YGGCCR	2 cut(s)	324, 630
AcsI	RAATTY	1 cut(s)	103
AfaI	GTAC	1 cut(s)	121
AfiI	CCNNNNNNNGG	4 cut(s)	777, 916, 979, 992
AgsI	TTSAA	7 cut(s)	50, 268, 275, 556, 670, 956, 964
AjnI	CCWGG	2 cut(s)	915, 972
Alw21I	GWGCWC	2 cut(s)	72, 115
Alw26I	GTCTC	3 cut(s)	755, 795, 828
ApoI	RAATTY	1 cut(s)	103
ArsI	GACNNNNNNTTYG	2 cut(s)	848, 880
AspLEI	GCGC	1 cut(s)	720
AspS9I	GGNCC	5 cut(s)	140, 335, 649, 691, 970
AsuHPI	GGTGA	4 cut(s)	16, 137, 430, 575
AxyI	CCTNAGG	1 cut(s)	522
BaeGI	GKGCMC	1 cut(s)	90
BalI	TGGCCA	1 cut(s)	326
BanII	GRGCYC	2 cut(s)	72, 115
BbsI	GAAGAC	1 cut(s)	788
Bbv12I	GWGCWC	2 cut(s)	72, 115
BccI	CCATC	8 cut(s)	124, 386, 424, 530, 554, 682, 836, 986
BceAI	ACGGC	1 cut(s)	617
BciT130I	CCWGG	2 cut(s)	917, 974
BclI	TGATCA	1 cut(s)	420
BcoDI	GTCTC	3 cut(s)	755, 795, 828
BfaI	CTAG	2 cut(s)	839, 1071
BglI	GCCNNNNNGGC	1 cut(s)	926
BlpI	GCTNAGC	1 cut(s)	811
Bme1390I	CCNGG	2 cut(s)	917, 974
BmgT120I	GGNCC	5 cut(s)	140, 335, 649, 691, 970
BmiI	GGNNCC	2 cut(s)	142, 984
BmrFI	CCNGG	2 cut(s)	917, 974
BmsI	GCATC	1 cut(s)	586
BpiI	GAAGAC	1 cut(s)	788
BplI	GAGNNNNNCTC	2 cut(s)	752, 784
BpmI	CTGGAG	1 cut(s)	969
Bpu1102I	GCTNAGC	1 cut(s)	811
Bsa29I	ATCGAT	1 cut(s)	753
BsaBI	GATNNNNATC	1 cut(s)	570
BsaI	GGTCTC	1 cut(s)	828
BsaJI	CCNNGG	6 cut(s)	11, 321, 633, 652, 910, 972
Bsc4I	CCNNNNNNNGG	4 cut(s)	777, 916, 979, 992
Bse1I	ACTGG	1 cut(s)	127
Bse21I	CCTNAGG	1 cut(s)	522
Bse3DI	GCAATG	1 cut(s)	869
Bse8I	GATNNNNATC	1 cut(s)	570
BseBI	CCWGG	2 cut(s)	917, 974
BseCI	ATCGAT	1 cut(s)	753
BseDI	CCNNGG	6 cut(s)	11, 321, 633, 652, 910, 972
BseGI	GGATG	2 cut(s)	435, 733
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	4 cut(s)	777, 916, 979, 992
BseMI	GCAATG	1 cut(s)	869
BseMII	CTCAG	8 cut(s)	90, 368, 513, 709, 806, 825, 873, 1038
BseNI	ACTGG	1 cut(s)	127
BseRI	GAGGAG	3 cut(s)	54, 261, 760
BseSI	GKGCMC	1 cut(s)	90
BseYI	CCCAGC	1 cut(s)	735
BsgI	GTGCAG	1 cut(s)	549
BshVI	ATCGAT	1 cut(s)	753
BsiHKAI	GWGCWC	2 cut(s)	72, 115
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	4 cut(s)	777, 916, 979, 992
BsmAI	GTCTC	3 cut(s)	755, 795, 828
BsmFI	GGGAC	1 cut(s)	233
Bso31I	GGTCTC	1 cut(s)	828
Bsp1286I	GDGCHC	3 cut(s)	72, 90, 115
Bsp143I	GATC	2 cut(s)	420, 472
Bsp1720I	GCTNAGC	1 cut(s)	811
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	3 cut(s)	187, 503, 778
BspCNI	CTCAG	8 cut(s)	91, 367, 514, 708, 805, 824, 872, 1039
BspDI	ATCGAT	1 cut(s)	753
BspLI	GGNNCC	2 cut(s)	142, 984
BspTNI	GGTCTC	1 cut(s)	828
BsrDI	GCAATG	1 cut(s)	869
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	6 cut(s)	11, 321, 633, 652, 910, 972
BssMI	GATC	2 cut(s)	420, 472
BssT1I	CCWWGG	4 cut(s)	11, 321, 652, 910
Bst2UI	CCWGG	2 cut(s)	917, 974
Bst4CI	ACNGT	2 cut(s)	263, 543
Bst6I	CTCTTC	2 cut(s)	165, 753
BstC8I	GCNNGC	1 cut(s)	585
BstDEI	CTNAG	8 cut(s)	99, 354, 522, 695, 792, 811, 859, 1047
BstDSI	CCRYGG	2 cut(s)	321, 633
BstF5I	GGATG	2 cut(s)	435, 733
BstHHI	GCGC	1 cut(s)	720
BstKTI	GATC	2 cut(s)	423, 475
BstMAI	GTCTC	3 cut(s)	755, 795, 828
BstMBI	GATC	2 cut(s)	420, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	926
BstNI	CCWGG	2 cut(s)	917, 974
BstNSI	RCATGY	2 cut(s)	404, 458
BstSCI	CCNGG	2 cut(s)	915, 972
BstSLI	GKGCMC	1 cut(s)	90
BstV2I	GAAGAC	1 cut(s)	788
Bsu15I	ATCGAT	1 cut(s)	753
Bsu36I	CCTNAGG	1 cut(s)	522
BsuTUI	ATCGAT	1 cut(s)	753
BtgI	CCRYGG	2 cut(s)	321, 633
BtsCI	GGATG	2 cut(s)	435, 733
Cac8I	GCNNGC	1 cut(s)	585
CfoI	GCGC	1 cut(s)	720
Cfr13I	GGNCC	5 cut(s)	140, 335, 649, 691, 970
ClaI	ATCGAT	1 cut(s)	753
Csp6I	GTAC	1 cut(s)	120
CviAII	CATG	5 cut(s)	299, 322, 401, 455, 628
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	8 cut(s)	99, 354, 522, 695, 792, 811, 859, 1047
DpnI	GATC	2 cut(s)	422, 474
DpnII	GATC	2 cut(s)	420, 472
EaeI	YGGCCR	2 cut(s)	324, 630
Eam1104I	CTCTTC	2 cut(s)	165, 753
EarI	CTCTTC	2 cut(s)	165, 753
Ecl136II	GAGCTC	2 cut(s)	70, 113
Eco130I	CCWWGG	4 cut(s)	11, 321, 652, 910
Eco147I	AGGCCT	1 cut(s)	920
Eco24I	GRGCYC	2 cut(s)	72, 115
Eco31I	GGTCTC	1 cut(s)	828
Eco32I	GATATC	1 cut(s)	751
Eco53kI	GAGCTC	2 cut(s)	70, 113
Eco81I	CCTNAGG	1 cut(s)	522
EcoICRI	GAGCTC	2 cut(s)	70, 113
EcoO109I	RGGNCCY	3 cut(s)	335, 649, 970
EcoRII	CCWGG	2 cut(s)	915, 972
EcoRV	GATATC	1 cut(s)	751
EcoT14I	CCWWGG	4 cut(s)	11, 321, 652, 910
EcoT38I	GRGCYC	2 cut(s)	72, 115
ErhI	CCWWGG	4 cut(s)	11, 321, 652, 910
FaeI	CATG	5 cut(s)	302, 325, 404, 458, 631
FalI	AAGNNNNNCTT	2 cut(s)	757, 789
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	5 cut(s)	298, 321, 400, 454, 627
FbaI	TGATCA	1 cut(s)	420
FblI	GTMKAC	1 cut(s)	820
FokI	GGATG	2 cut(s)	442, 740
FriOI	GRGCYC	2 cut(s)	72, 115
FspBI	CTAG	2 cut(s)	839, 1071
GlaI	GCGC	1 cut(s)	719
GsaI	CCCAGC	1 cut(s)	739
GsuI	CTGGAG	1 cut(s)	969
HhaI	GCGC	1 cut(s)	720
Hin1II	CATG	5 cut(s)	302, 325, 404, 458, 631
Hin6I	GCGC	1 cut(s)	718
HinP1I	GCGC	1 cut(s)	718
HindIII	AAGCTT	1 cut(s)	958
HinfI	GANTC	4 cut(s)	251, 638, 857, 944
HphI	GGTGA	4 cut(s)	16, 137, 430, 575
Hpy166II	GTNNAC	2 cut(s)	637, 821
Hpy188I	TCNGA	6 cut(s)	110, 378, 698, 795, 862, 1048
Hpy188III	TCNNGA	7 cut(s)	389, 521, 575, 670, 948, 964, 1071
Hpy8I	GTNNAC	2 cut(s)	637, 821
HpyAV	CCTTC	4 cut(s)	44, 889, 961, 1024
HpyCH4III	ACNGT	2 cut(s)	263, 543
HpyCH4V	TGCA	3 cut(s)	530, 599, 869
HpyF10VI	GCNNNNNNNGC	1 cut(s)	926
HpyF3I	CTNAG	8 cut(s)	99, 354, 522, 695, 792, 811, 859, 1047
Hsp92II	CATG	5 cut(s)	302, 325, 404, 458, 631
HspAI	GCGC	1 cut(s)	718
Ksp22I	TGATCA	1 cut(s)	420
Kzo9I	GATC	2 cut(s)	420, 472
LmnI	GCTCC	4 cut(s)	67, 739, 773, 845
LweI	GCATC	1 cut(s)	586
MaeI	CTAG	2 cut(s)	839, 1071
MaeIII	GTNAC	2 cut(s)	457, 545
MalI	GATC	2 cut(s)	422, 474
MboI	GATC	2 cut(s)	420, 472
MboII	GAAGA	7 cut(s)	66, 152, 287, 544, 758, 770, 793
MhlI	GDGCHC	3 cut(s)	72, 90, 115
MlsI	TGGCCA	1 cut(s)	326
MluCI	AATT	6 cut(s)	103, 328, 612, 827, 977, 999
MluNI	TGGCCA	1 cut(s)	326
MlyI	GAGTC	4 cut(s)	260, 632, 851, 938
MmeI	TCCRAC	1 cut(s)	834
MnlI	CCTC	9 cut(s)	32, 168, 239, 408, 517, 601, 704, 781, 989
Mox20I	TGGCCA	1 cut(s)	326
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	4 cut(s)	645, 684, 933, 1002
MslI	CAYNNNNRTG	2 cut(s)	390, 632
Msp20I	TGGCCA	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	98
MspR9I	CCNGG	2 cut(s)	917, 974
MvaI	CCWGG	2 cut(s)	917, 974
MwoI	GCNNNNNNNGC	1 cut(s)	926
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	2 cut(s)	420, 472
NlaIII	CATG	5 cut(s)	302, 325, 404, 458, 631
NlaIV	GGNNCC	2 cut(s)	142, 984
NmuCI	GTSAC	1 cut(s)	457
NspI	RCATGY	2 cut(s)	404, 458
PceI	AGGCCT	1 cut(s)	920
PflFI	GACNNNGTC	1 cut(s)	787
PflMI	CCANNNNNTGG	1 cut(s)	992
PleI	GAGTC	4 cut(s)	259, 632, 851, 938
PpsI	GAGTC	4 cut(s)	259, 632, 851, 938
Psp124BI	GAGCTC	2 cut(s)	72, 115
Psp6I	CCWGG	2 cut(s)	915, 972
PspFI	CCCAGC	1 cut(s)	735
PspGI	CCWGG	2 cut(s)	915, 972
PspN4I	GGNNCC	2 cut(s)	142, 984
PspPI	GGNCC	5 cut(s)	140, 335, 649, 691, 970
PsyI	GACNNNGTC	1 cut(s)	787
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
RseI	CAYNNNNRTG	2 cut(s)	390, 632
SacI	GAGCTC	2 cut(s)	72, 115
SaqAI	TTAA	4 cut(s)	645, 684, 933, 1002
Sau3AI	GATC	2 cut(s)	420, 472
Sau96I	GGNCC	5 cut(s)	140, 335, 649, 691, 970
SchI	GAGTC	4 cut(s)	260, 632, 851, 938
ScrFI	CCNGG	2 cut(s)	917, 974
SduI	GDGCHC	3 cut(s)	72, 90, 115
SfaNI	GCATC	1 cut(s)	586
SmiMI	CAYNNNNRTG	2 cut(s)	390, 632
Sse9I	AATT	6 cut(s)	103, 328, 612, 827, 977, 999
SseBI	AGGCCT	1 cut(s)	920
SsiI	CCGC	3 cut(s)	187, 503, 778
SspMI	CTAG	2 cut(s)	839, 1071
SstI	GAGCTC	2 cut(s)	72, 115
StuI	AGGCCT	1 cut(s)	920
StyD4I	CCNGG	2 cut(s)	915, 972
StyI	CCWWGG	4 cut(s)	11, 321, 652, 910
TaaI	ACNGT	2 cut(s)	263, 543
TaqI	TCGA	2 cut(s)	753, 942
TasI	AATT	6 cut(s)	103, 328, 612, 827, 977, 999
TatI	WGTACW	1 cut(s)	119
Tru1I	TTAA	4 cut(s)	645, 684, 933, 1002
Tru9I	TTAA	4 cut(s)	645, 684, 933, 1002
TseFI	GTSAC	1 cut(s)	457
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	3 cut(s)	294, 771, 1070
Tth111I	GACNNNGTC	1 cut(s)	787
Van91I	CCANNNNNTGG	1 cut(s)	992
XapI	RAATTY	1 cut(s)	103
XbaI	TCTAGA	1 cut(s)	1070
XceI	RCATGY	2 cut(s)	404, 458
XmiI	GTMKAC	1 cut(s)	820
XspI	CTAG	2 cut(s)	839, 1071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.