MD02G1167800.v1.1

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0002978
Physical Location & Seq
Forward (+)
14378417 .. 14381854
3438 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1167800.v1.1.491

Sequence Viewer

Length: 1086 bp
ATGGGGAGGCCAAGGTGCTACTTGGACATATCCATTGGAGGAGAGCTAGAAGGAAGAGTAGTGGTGGAGCTCTACAATGACATTGTCCCCAAAACAGCTGAGAATTTCAGAGCTCTCTGCACTGGTGAGTTGGGCATTGCCCCCCACACCAATGCTCCTCTGCACTACAAGGGTGTTTGTTTCCACCGCGTTATCAAAGGCTTTATGATTCAAGGTGGAGACATTTCGGCTGGAAATGGCAGTGGGGGAGAGTCGATTTACGGGTTGAAGTTTGAAGATGAAAACTTCGATATAAAGCATGAGAGAAAAGGAATGTTGTCCATGGCTAATAAAGGCCCTGACACCAATGGTTCTCAGTTTTTCATTACCACCACTCGGACTTCTCATCTTGATGGAAAGCATGTTGCGTTTGGGAAGGTCATCAAGGGCATGGGTGTGGTTCGTTCAGTTGAGCATGTGAACACGAAGGATGGAGACTTACCTATCCAGGAAGTCGTTATTGCGGATTGTGGGCAGCTTCCTGAGGGAGCAGATGATGGGGTGTGTAACTTCTTCAAAGATGGTGATGTTTATCCTGATTGGACTGCTGATCTTGATACAAAACCAGAGGACATTTCTTGGTGGGTCACGGCTGTGGACACTATTAAGGCCATTGGAAACGAACAGTTCAAGAAGCAAGACTATAAGATGGCCCTTAGAAAGTATCGCAAGGCCTTGCGCTATGTGGATATATGCTGGGAGCTGGAAGAAATAGATGAAGAGACGAGCTCCTCTTTGCGGAAGACAAAGTCCCAGATACTTACTAATAGCTCAGCTTGCAGGTTGAAATTAGGAGACCTAGAAGGAGCATTGTTGGACACAGACTTTGCATTGCGTGATTGGGAAGATAATGTGAAGGCTTTGTTTCGCCAAGGCCAGACCTATATGGCACTCAATGACATCGACGCTGCTGTCGAAAGCTTCAAGAAGGCACTGGATTTGGAACCAAATGATGGAGGAATAAAGAAAGAGCTTTTGGTTGCTAAAAAGAAGGTTGCGAATAGGTCTGAGCAAGAAAAGAAAGCATATTCTAGAATGTTTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04217 ko04218 map04217 map04218
Pfam Domains
Protein Families
Pro_isomerase TPR_1 TPR_2

Protein Analysis

362

Amino Acids

40.29

Weight (kDa)

5.62

Isoelectric Point (pI)

23.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 7 - 171 2.3e-49 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
TPR_1 PF00515 298 - 331 4e-08 Tetratricopeptide repeat
TPR_2 PF07719 299 - 331 3.1e-07 Tetratricopeptide repeat
TPR_8 PF13181 299 - 331 2.1e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 950
Acc36I ACCTGC 1 cut(s) 810
AccB7I CCANNNNNTGG 1 cut(s) 992
AccII CGCG 1 cut(s) 189
AciI CCGC 3 cut(s) 187, 503, 778
AcsI RAATTY 1 cut(s) 103
AfiI CCNNNNNNNGG 3 cut(s) 375, 777, 992
AgsI TTSAA 7 cut(s) 212, 268, 275, 556, 670, 826, 964
AjnI CCWGG 1 cut(s) 486
AjuI GAANNNNNNNTTGG 2 cut(s) 998, 1030
AleI CACNNNNGTG 1 cut(s) 632
Alw21I GWGCWC 3 cut(s) 72, 115, 770
Alw26I GTCTC 4 cut(s) 213, 468, 755, 828
AoxI GGCC 6 cut(s) 8, 334, 648, 690, 711, 913
ApeKI GCWGC 2 cut(s) 514, 947
ApoI RAATTY 1 cut(s) 103
ArsI GACNNNNNNTTYG 2 cut(s) 848, 880
AspLEI GCGC 1 cut(s) 720
AspS9I GGNCC 2 cut(s) 335, 691
AsuHPI GGTGA 2 cut(s) 137, 575
AxyI CCTNAGG 1 cut(s) 522
BanII GRGCYC 3 cut(s) 72, 115, 770
BbsI GAAGAC 1 cut(s) 788
Bbv12I GWGCWC 3 cut(s) 72, 115, 770
BbvI GCAGC 2 cut(s) 526, 934
BccI CCATC 6 cut(s) 386, 464, 530, 554, 682, 986
BceAI ACGGC 1 cut(s) 645
BciT130I CCWGG 1 cut(s) 488
BcoDI GTCTC 4 cut(s) 213, 468, 755, 828
BfaI CTAG 3 cut(s) 47, 839, 1071
BfuAI ACCTGC 1 cut(s) 810
BisI GCNGC 2 cut(s) 515, 948
BlpI GCTNAGC 1 cut(s) 811
BlsI GCNGC 2 cut(s) 516, 949
Bme1390I CCNGG 1 cut(s) 488
BmgT120I GGNCC 2 cut(s) 335, 691
BmiI GGNNCC 1 cut(s) 984
BmrFI CCNGG 1 cut(s) 488
BpiI GAAGAC 1 cut(s) 788
BplI GAGNNNNNCTC 2 cut(s) 752, 784
Bpu1102I GCTNAGC 1 cut(s) 811
BsaBI GATNNNNATC 1 cut(s) 570
BsaI GGTCTC 1 cut(s) 828
BsaJI CCNNGG 3 cut(s) 11, 321, 910
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bsc4I CCNNNNNNNGG 3 cut(s) 375, 777, 992
Bse1I ACTGG 2 cut(s) 127, 978
Bse21I CCTNAGG 1 cut(s) 522
Bse3DI GCAATG 2 cut(s) 135, 869
Bse8I GATNNNNATC 1 cut(s) 570
BseBI CCWGG 1 cut(s) 488
BseDI CCNNGG 3 cut(s) 11, 321, 910
BseGI GGATG 1 cut(s) 475
BseJI GATNNNNATC 1 cut(s) 570
BseLI CCNNNNNNNGG 3 cut(s) 375, 777, 992
BseMI GCAATG 2 cut(s) 135, 869
BseMII CTCAG 5 cut(s) 90, 368, 513, 825, 1038
BseNI ACTGG 2 cut(s) 127, 978
BseRI GAGGAG 3 cut(s) 54, 147, 760
BseXI GCAGC 2 cut(s) 526, 934
BseYI CCCAGC 1 cut(s) 735
BsgI GTGCAG 2 cut(s) 103, 146
Bsh1236I CGCG 1 cut(s) 189
BshFI GGCC 6 cut(s) 10, 336, 650, 692, 713, 915
BsiHKAI GWGCWC 3 cut(s) 72, 115, 770
BslFI GGGAC 2 cut(s) 71, 775
BslI CCNNNNNNNGG 3 cut(s) 375, 777, 992
BsmAI GTCTC 4 cut(s) 213, 468, 755, 828
BsmBI CGTCTC 1 cut(s) 755
BsmFI GGGAC 2 cut(s) 71, 775
BsnI GGCC 6 cut(s) 10, 336, 650, 692, 713, 915
Bso31I GGTCTC 1 cut(s) 828
Bsp1286I GDGCHC 3 cut(s) 72, 115, 770
Bsp143I GATC 1 cut(s) 589
Bsp1720I GCTNAGC 1 cut(s) 811
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 3 cut(s) 187, 503, 778
BspANI GGCC 6 cut(s) 10, 336, 650, 692, 713, 915
BspCNI CTCAG 5 cut(s) 91, 367, 514, 824, 1039
BspFNI CGCG 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 984
BspMI ACCTGC 1 cut(s) 810
BspTNI GGTCTC 1 cut(s) 828
BsrDI GCAATG 2 cut(s) 135, 869
BsrI ACTGG 2 cut(s) 127, 978
BssECI CCNNGG 3 cut(s) 11, 321, 910
BssMI GATC 1 cut(s) 589
BssT1I CCWWGG 3 cut(s) 11, 321, 910
Bst2UI CCWGG 1 cut(s) 488
Bst4CI ACNGT 1 cut(s) 666
Bst6I CTCTTC 2 cut(s) 49, 753
BstC8I GCNNGC 1 cut(s) 817
BstDEI CTNAG 6 cut(s) 99, 354, 522, 695, 811, 1047
BstDSI CCRYGG 1 cut(s) 321
BstF5I GGATG 1 cut(s) 475
BstFNI CGCG 1 cut(s) 189
BstHHI GCGC 1 cut(s) 720
BstKTI GATC 1 cut(s) 592
BstMAI GTCTC 4 cut(s) 213, 468, 755, 828
BstMBI GATC 1 cut(s) 589
BstMWI GCNNNNNNNGC 1 cut(s) 816
BstNI CCWGG 1 cut(s) 488
BstNSI RCATGY 2 cut(s) 404, 458
BstSCI CCNGG 1 cut(s) 486
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 2 cut(s) 526, 934
BstV2I GAAGAC 1 cut(s) 788
Bsu36I CCTNAGG 1 cut(s) 522
BsuRI GGCC 6 cut(s) 10, 336, 650, 692, 713, 915
BtgI CCRYGG 1 cut(s) 321
BtsCI GGATG 1 cut(s) 475
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 4 cut(s) 120, 247, 971, 1081
BveI ACCTGC 1 cut(s) 810
Cac8I GCNNGC 1 cut(s) 817
CfoI GCGC 1 cut(s) 720
Cfr13I GGNCC 2 cut(s) 335, 691
CseI GACGC 1 cut(s) 953
CviAII CATG 5 cut(s) 299, 322, 401, 430, 455
DdeI CTNAG 6 cut(s) 99, 354, 522, 695, 811, 1047
DpnI GATC 1 cut(s) 591
DpnII GATC 1 cut(s) 589
DrdI GACNNNNNNGTC 1 cut(s) 950
DseDI GACNNNNNNGTC 1 cut(s) 950
Eam1104I CTCTTC 2 cut(s) 49, 753
EarI CTCTTC 2 cut(s) 49, 753
Ecl136II GAGCTC 3 cut(s) 70, 113, 768
Eco130I CCWWGG 3 cut(s) 11, 321, 910
Eco147I AGGCCT 1 cut(s) 713
Eco24I GRGCYC 3 cut(s) 72, 115, 770
Eco31I GGTCTC 1 cut(s) 828
Eco53kI GAGCTC 3 cut(s) 70, 113, 768
Eco81I CCTNAGG 1 cut(s) 522
EcoICRI GAGCTC 3 cut(s) 70, 113, 768
EcoO109I RGGNCCY 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 486
EcoT14I CCWWGG 3 cut(s) 11, 321, 910
EcoT38I GRGCYC 3 cut(s) 72, 115, 770
ErhI CCWWGG 3 cut(s) 11, 321, 910
Esp3I CGTCTC 1 cut(s) 755
FaeI CATG 5 cut(s) 302, 325, 404, 433, 458
FaqI GGGAC 2 cut(s) 71, 775
FatI CATG 5 cut(s) 298, 321, 400, 429, 454
Fnu4HI GCNGC 2 cut(s) 515, 948
FokI GGATG 1 cut(s) 482
FriOI GRGCYC 3 cut(s) 72, 115, 770
Fsp4HI GCNGC 2 cut(s) 515, 948
FspBI CTAG 3 cut(s) 47, 839, 1071
GlaI GCGC 1 cut(s) 719
GluI GCNGC 2 cut(s) 515, 948
GsaI CCCAGC 1 cut(s) 739
HaeIII GGCC 6 cut(s) 10, 336, 650, 692, 713, 915
HgaI GACGC 1 cut(s) 953
HhaI GCGC 1 cut(s) 720
Hin1II CATG 5 cut(s) 302, 325, 404, 433, 458
Hin6I GCGC 1 cut(s) 718
HinP1I GCGC 1 cut(s) 718
HindIII AAGCTT 1 cut(s) 958
HinfI GANTC 2 cut(s) 208, 251
HphI GGTGA 2 cut(s) 137, 575
Hpy166II GTNNAC 2 cut(s) 460, 637
Hpy188I TCNGA 3 cut(s) 110, 378, 1048
Hpy188III TCNNGA 7 cut(s) 389, 521, 575, 593, 670, 964, 1071
Hpy8I GTNNAC 2 cut(s) 460, 637
Hpy99I CGWCG 1 cut(s) 947
HpyAV CCTTC 7 cut(s) 44, 409, 460, 836, 889, 961, 1024
HpyCH4III ACNGT 1 cut(s) 666
HpyCH4V TGCA 4 cut(s) 120, 163, 819, 869
HpyF10VI GCNNNNNNNGC 1 cut(s) 816
HpyF3I CTNAG 6 cut(s) 99, 354, 522, 695, 811, 1047
Hsp92II CATG 5 cut(s) 302, 325, 404, 433, 458
HspAI GCGC 1 cut(s) 718
Kzo9I GATC 1 cut(s) 589
LmnI GCTCC 6 cut(s) 67, 160, 527, 739, 773, 845
Lsp1109I GCAGC 2 cut(s) 526, 934
MaeI CTAG 3 cut(s) 47, 839, 1071
MaeIII GTNAC 2 cut(s) 545, 625
MalI GATC 1 cut(s) 591
MboI GATC 1 cut(s) 589
MboII GAAGA 7 cut(s) 66, 287, 544, 758, 770, 793, 896
MhlI GDGCHC 3 cut(s) 72, 115, 770
MluCI AATT 2 cut(s) 103, 827
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 1 cut(s) 834
MnlI CCTC 6 cut(s) 32, 168, 517, 601, 781, 989
MseI TTAA 1 cut(s) 645
MslI CAYNNNNRTG 4 cut(s) 150, 390, 434, 632
MspA1I CMGCKG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 488
MvaI CCWGG 1 cut(s) 488
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 816
NcoI CCATGG 1 cut(s) 321
NdeII GATC 1 cut(s) 589
NlaIII CATG 5 cut(s) 302, 325, 404, 433, 458
NlaIV GGNNCC 1 cut(s) 984
NmuCI GTSAC 1 cut(s) 625
NspI RCATGY 2 cut(s) 404, 458
OliI CACNNNNGTG 1 cut(s) 632
PceI AGGCCT 1 cut(s) 713
PcsI WCGNNNNNNNCGW 1 cut(s) 951
PfeI GAWTC 1 cut(s) 208
PflFI GACNNNGTC 2 cut(s) 83, 787
PflMI CCANNNNNTGG 1 cut(s) 992
PfoI TCCNGGA 1 cut(s) 486
PkrI GCNGC 2 cut(s) 516, 949
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
Psp124BI GAGCTC 3 cut(s) 72, 115, 770
Psp6I CCWGG 1 cut(s) 486
PspFI CCCAGC 1 cut(s) 735
PspGI CCWGG 1 cut(s) 486
PspN4I GGNNCC 1 cut(s) 984
PspPI GGNCC 2 cut(s) 335, 691
PsyI GACNNNGTC 2 cut(s) 83, 787
PvuII CAGCTG 1 cut(s) 98
RseI CAYNNNNRTG 4 cut(s) 150, 390, 434, 632
SacI GAGCTC 3 cut(s) 72, 115, 770
SaqAI TTAA 1 cut(s) 645
SatI GCNGC 2 cut(s) 515, 948
Sau3AI GATC 1 cut(s) 589
Sau96I GGNCC 2 cut(s) 335, 691
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 488
SduI GDGCHC 3 cut(s) 72, 115, 770
SmiMI CAYNNNNRTG 4 cut(s) 150, 390, 434, 632
Sse9I AATT 2 cut(s) 103, 827
SseBI AGGCCT 1 cut(s) 713
SsiI CCGC 3 cut(s) 187, 503, 778
SspMI CTAG 3 cut(s) 47, 839, 1071
SstI GAGCTC 3 cut(s) 72, 115, 770
StuI AGGCCT 1 cut(s) 713
StyD4I CCNGG 1 cut(s) 486
StyI CCWWGG 3 cut(s) 11, 321, 910
TaaI ACNGT 1 cut(s) 666
TaqI TCGA 4 cut(s) 254, 288, 942, 954
TasI AATT 2 cut(s) 103, 827
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 1 cut(s) 645
Tru9I TTAA 1 cut(s) 645
TscAI CASTG 3 cut(s) 127, 247, 978
TseFI GTSAC 1 cut(s) 625
TseI GCWGC 2 cut(s) 514, 947
Tsp45I GTSAC 1 cut(s) 625
TspDTI ATGAA 3 cut(s) 294, 352, 771
TspRI CASTG 3 cut(s) 127, 247, 978
Tth111I GACNNNGTC 2 cut(s) 83, 787
Van91I CCANNNNNTGG 1 cut(s) 992
XapI RAATTY 1 cut(s) 103
XbaI TCTAGA 1 cut(s) 1070
XceI RCATGY 2 cut(s) 404, 458
XspI CTAG 3 cut(s) 47, 839, 1071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.