Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002978

Physical Location & Seq

Genomic Coordinates Reverse (-)

5642283 .. 5646048

Gene Structure 3766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g06830.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGGGGAGAGACCAAGGTGCTTTCTGGACATTAGCATAGGAGGAGAGCTTGAAGGACGGATAGTGATTGAGCTTTACGACCATGTGGTGCCCAAAACTGCTGAGAATTTTAGAGCTCTCTGTACTGGAGAGAAGGGCATTGGTCCCAACACTGGTGTCCCCCTCCACTACAAGGGAAACCGTTTTCATCGTGTTATCAAAGGCTTTATGATACAAGGGGGTGACATTTCTGCTGGAGATGGCACTGGGGGAGAATCTATCTATGGGCTGAAGTTTGAAGATGAAAATTTTGAATTGAAACATGAAAGGAAAGGCATGTTATCCATGGCCAATGCTGGTCCGGACACCAATGGGTCTCAGTTTTTTATCACAACAACTCGCACTGCTCATTTAGATGGGAAACATGTTGTGTTTGGGAAGGTAGTAAAAGGGATGGGAGTGGTTCGTTCAATTGAGCACATTTCTACTGGTGAGGGCGGTGATTCTCCGATTGTTGACGTTGTCATTGCGGATTGTGGAGAAATTCCTGCTGAGGCAGATGATGGAATATCTAATTTATTCAATGATGGTGACACTTATCCTGATTGGCCTGCTGACCTAGATAATAGTTCGGATGAGCTTTCTTGGTGGATGACTTCTGTAGATTCAATCAAGGCTTTCGGTAATGAATATTTCAAGAAACAAGACTATAAGATGGCTCTTAGAAAGTACAGGAAATCTTTGCGCTATCTCGATATTTGTTGGGAGAAAGATGGAATTGATGAAGAAAAGAGTTCGAGTTTAAGAAAAATCAAGTCACAGATTTTCACTAATAGCTCTGCTTGTAAATTGAAATTAGGGGACCTGAAAGGAGCACTGTTAGACACTGACTTTGCAATGAGGGATGGAGAAAATAATGTGAAGGCATTGTTTCGACAAGGCCAGGCATACATAGCACTTAATGATATTGATGCTGCTGTTGAGAGCTTCAAGAAGGCATTGGATTTGGAACCAACTGATGCTGGAATTAAAAAGGAGCTTGCTGCTGCTAAGAAGAAGATTTCTGATAGGCATGATAAGGAGAAGAAGGCCTACAGCAAGATGTTTCAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000413 GO:0003006 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010022 GO:0010050 GO:0010073 GO:0010582 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090567 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04217 ko04218 map04217 map04218

Pfam Domains

Protein Families

Pro_isomerase TPR_1 TPR_2

Protein Analysis

365

Amino Acids

40.32

Weight (kDa)

5.85

Isoelectric Point (pI)

20.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	1 - 104	2.1e-29	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
TPR_1	PF00515	231 - 264	1.3e-07	Tetratricopeptide repeat
TPR_2	PF07719	232 - 264	4.7e-07	Tetratricopeptide repeat
TPR_8	PF13181	232 - 263	3.3e-07	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15790
fragaria_vesca	FvH4_1g15560 FvH4_1g15560 FvH4_1g15560 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830
malus_domestica	MD02G1167800.v1.1 MD05G1075200.v1.1 MD15G1280000.v1.1
prunus_persica	Prupe.7G137400_v2.0.a1 Prupe.8G116600_v2.0.a1 Prupe.8G116600_v2.0.a1
pyrus_communis	pycom02g13470 pycom05g06840
rosa_chinensis	RchiOBHm_Chr2g0104891 RchiOBHm_Chr6g0259041
rosa_laevigata	RLG00000014561 RLG00000017365
rosa_multiflora	Rmu_sc0003419.1_g000006 Rmu_ssc0000050.1_g000113
rosa_roxburghii	Rroxscaffold_2G00138700 Rroxscaffold_7G00206290 Rroxscaffold_7G00206440
rosa_rugosa	Rorug02G0123600 Rorug02G0123700 Rorug05G0585100 Rorug05G0585200
rosa_samantha	Rh2AG173900 Rh2BG181500 Rh2CG178800 Rh2DG180200 Rh6AG101400
rosa_wichuraiana	Rw2G013680 Rw6G008820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	88
AccIII	TCCGGA	1 cut(s)	340
AciI	CCGC	2 cut(s)	477, 509
AcoI	YGGCCR	1 cut(s)	327
AcsI	RAATTY	3 cut(s)	106, 286, 522
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	2 cut(s)	124, 710
AfiI	CCNNNNNNNGG	2 cut(s)	152, 172
AflIII	ACRYGT	1 cut(s)	403
AjnI	CCWGG	1 cut(s)	921
AluBI	AGCT	7 cut(s)	49, 73, 116, 619, 816, 966, 1018
AluI	AGCT	7 cut(s)	49, 73, 116, 619, 816, 966, 1018
Alw21I	GWGCWC	3 cut(s)	118, 459, 856
Alw26I	GTCTC	2 cut(s)	4, 360
Aor13HI	TCCGGA	1 cut(s)	340
AoxI	GGCC	4 cut(s)	327, 587, 919, 1068
ApeKI	GCWGC	3 cut(s)	953, 1022, 1025
ApoI	RAATTY	3 cut(s)	106, 286, 522
ArsI	GACNNNNNNTTYG	2 cut(s)	854, 886
AspLEI	GCGC	1 cut(s)	726
AspS9I	GGNCC	3 cut(s)	143, 338, 841
AsuHPI	GGTGA	4 cut(s)	233, 482, 491, 581
AvaII	GGWCC	3 cut(s)	143, 338, 841
BaeGI	GKGCMC	1 cut(s)	93
BalI	TGGCCA	1 cut(s)	329
BanI	GGYRCC	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	118
BarI	GAAGNNNNNNTAC	2 cut(s)	1055, 1087
Bbv12I	GWGCWC	3 cut(s)	118, 459, 856
BbvCI	CCTCAGC	1 cut(s)	531
BbvI	GCAGC	3 cut(s)	940, 1009, 1012
BccI	CCATC	8 cut(s)	233, 389, 427, 536, 560, 688, 746, 878
BciT130I	CCWGG	1 cut(s)	923
BcoDI	GTCTC	2 cut(s)	4, 360
BfaI	CTAG	1 cut(s)	599
BfmI	CTRYAG	2 cut(s)	639, 1072
BisI	GCNGC	3 cut(s)	954, 1023, 1026
BlsI	GCNGC	3 cut(s)	955, 1024, 1027
Bme1390I	CCNGG	1 cut(s)	923
Bme18I	GGWCC	3 cut(s)	143, 338, 841
BmgT120I	GGNCC	3 cut(s)	143, 338, 841
BmiI	GGNNCC	4 cut(s)	90, 145, 842, 990
BmrFI	CCNGG	1 cut(s)	923
BmrI	ACTGGG	1 cut(s)	255
BmsI	GCATC	2 cut(s)	940, 988
BmuI	ACTGGG	1 cut(s)	255
BpmI	CTGGAG	2 cut(s)	147, 255
Bpu10I	CCTNAGC	1 cut(s)	531
BsaI	GGTCTC	2 cut(s)	4, 360
BsaJI	CCNNGG	2 cut(s)	14, 324
BsaWI	WCCGGW	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 172
Bse1I	ACTGG	4 cut(s)	130, 157, 250, 472
Bse3DI	GCAATG	2 cut(s)	504, 882
BseAI	TCCGGA	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	923
BseDI	CCNNGG	2 cut(s)	14, 324
BseGI	GGATG	4 cut(s)	438, 619, 636, 889
BseLI	CCNNNNNNNGG	2 cut(s)	152, 172
BseMI	GCAATG	2 cut(s)	504, 882
BseMII	CTCAG	3 cut(s)	93, 371, 522
BseNI	ACTGG	4 cut(s)	130, 157, 250, 472
BseRI	GAGGAG	1 cut(s)	57
BseSI	GKGCMC	1 cut(s)	93
BseXI	GCAGC	3 cut(s)	940, 1009, 1012
BshFI	GGCC	4 cut(s)	329, 589, 921, 1070
BshNI	GGYRCC	1 cut(s)	88
BsiHKAI	GWGCWC	3 cut(s)	118, 459, 856
BsiSI	CCGG	1 cut(s)	341
BslFI	GGGAC	3 cut(s)	129, 143, 854
BslI	CCNNNNNNNGG	2 cut(s)	152, 172
BsmAI	GTCTC	2 cut(s)	4, 360
BsmFI	GGGAC	3 cut(s)	129, 143, 854
BsnI	GGCC	4 cut(s)	329, 589, 921, 1070
Bso31I	GGTCTC	2 cut(s)	4, 360
Bsp1286I	GDGCHC	4 cut(s)	93, 118, 459, 856
Bsp13I	TCCGGA	1 cut(s)	340
Bsp19I	CCATGG	1 cut(s)	324
BspACI	CCGC	2 cut(s)	477, 509
BspANI	GGCC	4 cut(s)	329, 589, 921, 1070
BspCNI	CTCAG	3 cut(s)	94, 370, 523
BspEI	TCCGGA	1 cut(s)	340
BspLI	GGNNCC	4 cut(s)	90, 145, 842, 990
BspT107I	GGYRCC	1 cut(s)	88
BspTNI	GGTCTC	2 cut(s)	4, 360
BsrDI	GCAATG	2 cut(s)	504, 882
BsrI	ACTGG	4 cut(s)	130, 157, 250, 472
BssECI	CCNNGG	2 cut(s)	14, 324
BssT1I	CCWWGG	2 cut(s)	14, 324
Bst2UI	CCWGG	1 cut(s)	923
Bst4CI	ACNGT	2 cut(s)	182, 858
BstC8I	GCNNGC	2 cut(s)	591, 1020
BstDEI	CTNAG	5 cut(s)	102, 357, 531, 701, 1029
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	4 cut(s)	438, 619, 636, 889
BstHHI	GCGC	1 cut(s)	726
BstMAI	GTCTC	2 cut(s)	4, 360
BstMWI	GCNNNNNNNGC	1 cut(s)	932
BstNI	CCWGG	1 cut(s)	923
BstNSI	RCATGY	2 cut(s)	319, 407
BstSCI	CCNGG	1 cut(s)	921
BstSFI	CTRYAG	2 cut(s)	639, 1072
BstSLI	GKGCMC	1 cut(s)	93
BstV1I	GCAGC	3 cut(s)	940, 1009, 1012
BsuRI	GGCC	4 cut(s)	329, 589, 921, 1070
BtgI	CCRYGG	1 cut(s)	324
BtsCI	GGATG	4 cut(s)	438, 619, 636, 889
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	5 cut(s)	150, 243, 381, 854, 864
Cac8I	GCNNGC	2 cut(s)	591, 1020
CfoI	GCGC	1 cut(s)	726
Cfr13I	GGNCC	3 cut(s)	143, 338, 841
Csp6I	GTAC	2 cut(s)	123, 709
CviAII	CATG	6 cut(s)	83, 302, 316, 325, 404, 1052
CviQI	GTAC	2 cut(s)	123, 709
DdeI	CTNAG	5 cut(s)	102, 357, 531, 701, 1029
EaeI	YGGCCR	1 cut(s)	327
Ecl136II	GAGCTC	1 cut(s)	116
Eco130I	CCWWGG	2 cut(s)	14, 324
Eco147I	AGGCCT	1 cut(s)	1070
Eco24I	GRGCYC	1 cut(s)	118
Eco31I	GGTCTC	2 cut(s)	4, 360
Eco47I	GGWCC	3 cut(s)	143, 338, 841
Eco53kI	GAGCTC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	841
EcoRII	CCWGG	1 cut(s)	921
EcoT14I	CCWWGG	2 cut(s)	14, 324
EcoT38I	GRGCYC	1 cut(s)	118
ErhI	CCWWGG	2 cut(s)	14, 324
FaeI	CATG	6 cut(s)	86, 305, 319, 328, 407, 1055
FaqI	GGGAC	3 cut(s)	129, 143, 854
FatI	CATG	6 cut(s)	82, 301, 315, 324, 403, 1051
Fnu4HI	GCNGC	3 cut(s)	954, 1023, 1026
FokI	GGATG	4 cut(s)	445, 626, 643, 896
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	3 cut(s)	954, 1023, 1026
FspBI	CTAG	1 cut(s)	599
GlaI	GCGC	1 cut(s)	725
GluI	GCNGC	3 cut(s)	954, 1023, 1026
GsuI	CTGGAG	2 cut(s)	147, 255
HaeIII	GGCC	4 cut(s)	329, 589, 921, 1070
HapII	CCGG	1 cut(s)	341
HhaI	GCGC	1 cut(s)	726
Hin1II	CATG	6 cut(s)	86, 305, 319, 328, 407, 1055
Hin6I	GCGC	1 cut(s)	724
HinP1I	GCGC	1 cut(s)	724
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	3 cut(s)	254, 482, 644
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	4 cut(s)	233, 482, 491, 581
Hpy166II	GTNNAC	1 cut(s)	496
Hpy188I	TCNGA	4 cut(s)	489, 613, 1045, 1089
Hpy188III	TCNNGA	6 cut(s)	26, 341, 581, 676, 731, 970
Hpy8I	GTNNAC	1 cut(s)	496
HpyAV	CCTTC	6 cut(s)	47, 127, 412, 895, 967, 1060
HpyCH4III	ACNGT	2 cut(s)	182, 858
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	1 cut(s)	875
HpyF10VI	GCNNNNNNNGC	1 cut(s)	932
HpyF3I	CTNAG	5 cut(s)	102, 357, 531, 701, 1029
HpySE526I	ACGT	1 cut(s)	498
Hsp92II	CATG	6 cut(s)	86, 305, 319, 328, 407, 1055
HspAI	GCGC	1 cut(s)	724
Kpn2I	TCCGGA	1 cut(s)	340
LmnI	GCTCC	2 cut(s)	851, 1015
Lsp1109I	GCAGC	3 cut(s)	940, 1009, 1012
LweI	GCATC	2 cut(s)	940, 988
MaeI	CTAG	1 cut(s)	599
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	3 cut(s)	221, 569, 795
MboII	GAAGA	5 cut(s)	290, 776, 1045, 1048, 1075
MfeI	CAATTG	1 cut(s)	450
MhlI	GDGCHC	4 cut(s)	93, 118, 459, 856
MlsI	TGGCCA	1 cut(s)	329
MluNI	TGGCCA	1 cut(s)	329
MnlI	CCTC	5 cut(s)	35, 173, 466, 526, 873
Mox20I	TGGCCA	1 cut(s)	329
MroI	TCCGGA	1 cut(s)	340
MscI	TGGCCA	1 cut(s)	329
MseI	TTAA	3 cut(s)	782, 939, 1008
MslI	CAYNNNNRTG	1 cut(s)	393
Msp20I	TGGCCA	1 cut(s)	329
MspI	CCGG	1 cut(s)	341
MspR9I	CCNGG	1 cut(s)	923
MunI	CAATTG	1 cut(s)	450
MvaI	CCWGG	1 cut(s)	923
MwoI	GCNNNNNNNGC	1 cut(s)	932
NcoI	CCATGG	1 cut(s)	324
NlaIII	CATG	6 cut(s)	86, 305, 319, 328, 407, 1055
NlaIV	GGNNCC	4 cut(s)	90, 145, 842, 990
NmuCI	GTSAC	3 cut(s)	221, 569, 795
NspI	RCATGY	2 cut(s)	319, 407
PceI	AGGCCT	1 cut(s)	1070
PciI	ACATGT	1 cut(s)	403
PfeI	GAWTC	3 cut(s)	254, 482, 644
PflFI	GACNNNGTC	1 cut(s)	500
PkrI	GCNGC	3 cut(s)	955, 1024, 1027
PpuMI	RGGWCCY	1 cut(s)	841
PscI	ACATGT	1 cut(s)	403
Psp124BI	GAGCTC	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	841
Psp6I	CCWGG	1 cut(s)	921
PspGI	CCWGG	1 cut(s)	921
PspN4I	GGNNCC	4 cut(s)	90, 145, 842, 990
PspPI	GGNCC	3 cut(s)	143, 338, 841
PspPPI	RGGWCCY	1 cut(s)	841
PsyI	GACNNNGTC	1 cut(s)	500
RsaI	GTAC	2 cut(s)	124, 710
RsaNI	GTAC	2 cut(s)	123, 709
RseI	CAYNNNNRTG	1 cut(s)	393
SacI	GAGCTC	1 cut(s)	118
SaqAI	TTAA	3 cut(s)	782, 939, 1008
SatI	GCNGC	3 cut(s)	954, 1023, 1026
Sau96I	GGNCC	3 cut(s)	143, 338, 841
ScrFI	CCNGG	1 cut(s)	923
SduI	GDGCHC	4 cut(s)	93, 118, 459, 856
SfaNI	GCATC	2 cut(s)	940, 988
SfcI	CTRYAG	2 cut(s)	639, 1072
SinI	GGWCC	3 cut(s)	143, 338, 841
SmiMI	CAYNNNNRTG	1 cut(s)	393
SseBI	AGGCCT	1 cut(s)	1070
SsiI	CCGC	2 cut(s)	477, 509
SspI	AATATT	1 cut(s)	671
SspMI	CTAG	1 cut(s)	599
SstI	GAGCTC	1 cut(s)	118
StuI	AGGCCT	1 cut(s)	1070
StyD4I	CCNGG	1 cut(s)	921
StyI	CCWWGG	2 cut(s)	14, 324
TaaI	ACNGT	2 cut(s)	182, 858
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	3 cut(s)	732, 776, 913
TatI	WGTACW	2 cut(s)	122, 708
TfiI	GAWTC	3 cut(s)	254, 482, 644
Tru1I	TTAA	3 cut(s)	782, 939, 1008
Tru9I	TTAA	3 cut(s)	782, 939, 1008
TscAI	CASTG	5 cut(s)	157, 250, 388, 861, 871
TseFI	GTSAC	3 cut(s)	221, 569, 795
TseI	GCWGC	3 cut(s)	953, 1022, 1025
Tsp45I	GTSAC	3 cut(s)	221, 569, 795
TspDTI	ATGAA	5 cut(s)	176, 297, 318, 681, 777
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	5 cut(s)	157, 250, 388, 861, 871
Tth111I	GACNNNGTC	1 cut(s)	500
VpaK11BI	GGWCC	3 cut(s)	143, 338, 841
XapI	RAATTY	3 cut(s)	106, 286, 522
XceI	RCATGY	2 cut(s)	319, 407
XspI	CTAG	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.