Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003419.1

Orthogroup ID

OG0002978

Physical Location & Seq

Genomic Coordinates Reverse (-)

12564 .. 15748

Gene Structure 3185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003419.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atggtgagaccaagatgttaccttgacataaccataggaggagaaccggaaggaagaatcgtcattgagctctacaacgacgtcgtcccgaaaaccgcggagaatttcagagcgctgtgcaccggtgagaagggcattgctcccaacaccgccgtccctcttcatttcaagggggttggtttccaccgcattatcaaagggtttatgatacaagggggagacatctcagctgggaatgggagcgggggagagtcgatttacggctcgaaattcgaggatgagaatttcgagattaagcatgagaggaaggggatggtgtccatggcgaatactgggccggatagtaatggctcacagttctttattaccactactcggactccccatctggatgggaagcatgttgtgtttgggagggtgattaagggaatgggggtggccaggtccattgagcatgtgagtactaaagatgatggggagcattttcccactcaggaggttttgattgcggattgtggggaacttgctgagggggctgatgatggggtgtgtaatttttttaaggatggggatgtttatcctgattggcccgttgatcttgatgcgaaacatgagcagatatcttggtgggttagtgctgtgaatgtgattaaggcacttggaaatgagcagttcaagaagcaagactataagatggccctgcgaaagtatcgcaaggctttgcgctatttggatctgtgctgggagttggaagatatcaatgaagagaacagctcctctctgcggcagacaaagtctcagatatttactaatagctcagcttgtagattgaaattaggagacctagaaggagcattgttggatacagactttgcattgcgtgattgggaggacaatgtgaaggctttgtttcgccaaggccagacatatatggcactaaatgacattgactctgcggttgaaagcttcaagaaggcactggaattggaaccaaatgatgggggaattaagaaagagcttctggttgctaaaaagaagctgataggagtgagagagaaaagagagcatattctcgaatgtttaaccaatgatggcagtcataagaggctgcacatgtatggatggactttgattccttttgcacttgctaaattacatagtcaactggttccttctgcagtcttaatcggcactatgaaataccaggctttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04217 ko04218 map04217 map04218

Pfam Domains

Protein Families

Pro_isomerase TPR_1 TPR_2

Protein Analysis

404

Amino Acids

45.13

Weight (kDa)

5.99

Isoelectric Point (pI)

28.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15790
fragaria_vesca	FvH4_1g15560 FvH4_1g15560 FvH4_1g15560 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830
malus_domestica	MD02G1167800.v1.1 MD05G1075200.v1.1 MD15G1280000.v1.1
prunus_persica	Prupe.7G137400_v2.0.a1 Prupe.8G116600_v2.0.a1 Prupe.8G116600_v2.0.a1
pyrus_communis	pycom02g13470 pycom05g06840
rosa_chinensis	RchiOBHm_Chr2g0104891 RchiOBHm_Chr6g0259041
rosa_laevigata	RLG00000014561 RLG00000017365
rosa_multiflora	Rmu_sc0003419.1_g000006 Rmu_ssc0000050.1_g000113
rosa_roxburghii	Rroxscaffold_2G00138700 Rroxscaffold_7G00206290 Rroxscaffold_7G00206440
rosa_rugosa	Rorug02G0123600 Rorug02G0123700 Rorug05G0585100 Rorug05G0585200
rosa_samantha	Rh2AG173900 Rh2BG181500 Rh2CG178800 Rh2DG180200 Rh6AG101400
rosa_wichuraiana	Rw2G013680 Rw6G008820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	84
AccB7I	CCANNNNNTGG	1 cut(s)	998
AccBSI	CCGCTC	1 cut(s)	243
AccII	CGCG	1 cut(s)	98
AciI	CCGC	8 cut(s)	96, 98, 150, 187, 243, 509, 784, 956
AclWI	GGATC	1 cut(s)	741
AcoI	YGGCCR	1 cut(s)	438
AcsI	RAATTY	3 cut(s)	103, 269, 283
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	1 cut(s)	463
AfeI	AGCGCT	1 cut(s)	114
AfiI	CCNNNNNNNGG	3 cut(s)	375, 783, 998
AflIII	ACRYGT	1 cut(s)	1113
AgeI	ACCGGT	1 cut(s)	122
AgsI	TTSAA	5 cut(s)	169, 676, 832, 962, 970
AjnI	CCWGG	2 cut(s)	440, 1203
AluBI	AGCT	8 cut(s)	70, 230, 774, 816, 821, 966, 1018, 1039
AluI	AGCT	8 cut(s)	70, 230, 774, 816, 821, 966, 1018, 1039
Alw21I	GWGCWC	2 cut(s)	72, 122
Alw26I	GTCTC	3 cut(s)	213, 801, 834
Alw44I	GTGCAC	1 cut(s)	118
AlwI	GGATC	1 cut(s)	741
Aor51HI	AGCGCT	1 cut(s)	114
AoxI	GGCC	5 cut(s)	335, 438, 587, 696, 919
ApaLI	GTGCAC	1 cut(s)	118
ApeKI	GCWGC	1 cut(s)	1108
ApoI	RAATTY	3 cut(s)	103, 269, 283
AsiGI	ACCGGT	1 cut(s)	122
AspLEI	GCGC	2 cut(s)	115, 726
AspS9I	GGNCC	4 cut(s)	335, 444, 588, 697
AsuHPI	GGTGA	3 cut(s)	16, 137, 430
AvaII	GGWCC	1 cut(s)	444
BaeGI	GKGCMC	1 cut(s)	122
BalI	TGGCCA	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	72
Bbv12I	GWGCWC	2 cut(s)	72, 122
BbvCI	CCTCAGC	1 cut(s)	528
BbvI	GCAGC	1 cut(s)	1095
BceAI	ACGGC	2 cut(s)	137, 277
BciT130I	CCWGG	2 cut(s)	442, 1205
BciVI	GTATCC	1 cut(s)	856
BcoDI	GTCTC	3 cut(s)	213, 801, 834
BfaI	CTAG	1 cut(s)	845
BfmI	CTRYAG	1 cut(s)	1176
BfoI	RGCGCY	1 cut(s)	116
BfuI	GTATCC	1 cut(s)	856
BisI	GCNGC	2 cut(s)	785, 1109
BlpI	GCTNAGC	1 cut(s)	817
BlsI	GCNGC	2 cut(s)	786, 1110
BmcAI	AGTACT	1 cut(s)	463
Bme1390I	CCNGG	2 cut(s)	442, 1205
Bme18I	GGWCC	1 cut(s)	444
BmgT120I	GGNCC	4 cut(s)	335, 444, 588, 697
BmiI	GGNNCC	2 cut(s)	990, 1170
BmrFI	CCNGG	2 cut(s)	442, 1205
BmrI	ACTGGG	1 cut(s)	342
BmsI	GCATC	1 cut(s)	592
BmuI	ACTGGG	1 cut(s)	342
BplI	GAGNNNNNCTC	2 cut(s)	758, 790
Bpu10I	CCTNAGC	1 cut(s)	528
Bpu1102I	GCTNAGC	1 cut(s)	817
BsaBI	GATNNNNATC	1 cut(s)	576
BsaHI	GRCGYC	1 cut(s)	81
BsaI	GGTCTC	1 cut(s)	834
BsaJI	CCNNGG	3 cut(s)	96, 321, 916
BsaWI	WCCGGW	2 cut(s)	46, 122
BsaXI	ACNNNNNCTCC	2 cut(s)	364, 394
Bsc4I	CCNNNNNNNGG	3 cut(s)	375, 783, 998
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	3 cut(s)	337, 984, 1170
Bse3DI	GCAATG	2 cut(s)	135, 875
Bse8I	GATNNNNATC	1 cut(s)	576
BseBI	CCWGG	2 cut(s)	442, 1205
BseDI	CCNNGG	3 cut(s)	96, 321, 916
BseGI	GGATG	6 cut(s)	283, 318, 397, 571, 577, 1127
BseJI	GATNNNNATC	1 cut(s)	576
BseLI	CCNNNNNNNGG	3 cut(s)	375, 783, 998
BseMI	GCAATG	2 cut(s)	135, 875
BseMII	CTCAG	5 cut(s)	240, 506, 519, 812, 831
BseNI	ACTGG	3 cut(s)	337, 984, 1170
BseRI	GAGGAG	2 cut(s)	54, 766
BseSI	GKGCMC	1 cut(s)	122
BseXI	GCAGC	1 cut(s)	1095
BseYI	CCCAGC	2 cut(s)	230, 741
BsgI	GTGCAG	1 cut(s)	1094
Bsh1236I	CGCG	1 cut(s)	98
BshFI	GGCC	5 cut(s)	337, 440, 589, 698, 921
BshTI	ACCGGT	1 cut(s)	122
BsiHKAI	GWGCWC	2 cut(s)	72, 122
BsiSI	CCGG	3 cut(s)	47, 123, 338
BslFI	GGGAC	2 cut(s)	71, 140
BslI	CCNNNNNNNGG	3 cut(s)	375, 783, 998
BsmAI	GTCTC	3 cut(s)	213, 801, 834
BsmFI	GGGAC	2 cut(s)	71, 140
BsnI	GGCC	5 cut(s)	337, 440, 589, 698, 921
Bso31I	GGTCTC	1 cut(s)	834
Bsp1286I	GDGCHC	2 cut(s)	72, 122
Bsp143I	GATC	2 cut(s)	595, 733
Bsp1720I	GCTNAGC	1 cut(s)	817
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	8 cut(s)	96, 98, 150, 187, 243, 509, 784, 956
BspANI	GGCC	5 cut(s)	337, 440, 589, 698, 921
BspCNI	CTCAG	5 cut(s)	239, 505, 520, 811, 830
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	2 cut(s)	990, 1170
BspMAI	CTGCAG	1 cut(s)	1180
BspPI	GGATC	1 cut(s)	741
BspTNI	GGTCTC	1 cut(s)	834
BsrBI	CCGCTC	1 cut(s)	243
BsrDI	GCAATG	2 cut(s)	135, 875
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	3 cut(s)	337, 984, 1170
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	3 cut(s)	96, 321, 916
BssMI	GATC	2 cut(s)	595, 733
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	2 cut(s)	321, 916
Bst2UI	CCWGG	2 cut(s)	442, 1205
Bst4CI	ACNGT	1 cut(s)	357
Bst6I	CTCTTC	2 cut(s)	165, 759
BstACI	GRCGYC	1 cut(s)	81
BstDEI	CTNAG	5 cut(s)	226, 492, 528, 798, 817
BstDSI	CCRYGG	2 cut(s)	96, 321
BstF5I	GGATG	6 cut(s)	283, 318, 397, 571, 577, 1127
BstFNI	CGCG	1 cut(s)	98
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	2 cut(s)	115, 726
BstKTI	GATC	2 cut(s)	598, 736
BstMAI	GTCTC	3 cut(s)	213, 801, 834
BstMBI	GATC	2 cut(s)	595, 733
BstMWI	GCNNNNNNNGC	1 cut(s)	533
BstNI	CCWGG	2 cut(s)	442, 1205
BstNSI	RCATGY	3 cut(s)	404, 458, 1117
BstSCI	CCNGG	2 cut(s)	440, 1203
BstSFI	CTRYAG	1 cut(s)	1176
BstSLI	GKGCMC	1 cut(s)	122
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	1095
BstX2I	RGATCY	1 cut(s)	733
BstXI	CCANNNNNNTGG	1 cut(s)	392
BstYI	RGATCY	1 cut(s)	733
BsuI	GTATCC	1 cut(s)	856
BsuRI	GGCC	5 cut(s)	337, 440, 589, 698, 921
BtgI	CCRYGG	2 cut(s)	96, 321
BtsCI	GGATG	6 cut(s)	283, 318, 397, 571, 577, 1127
BtsIMutI	CAGTG	1 cut(s)	977
CfoI	GCGC	2 cut(s)	115, 726
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	4 cut(s)	335, 444, 588, 697
Cfr42I	CCGCGG	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	462
CspAI	ACCGGT	1 cut(s)	122
CviAII	CATG	6 cut(s)	299, 322, 401, 455, 611, 1114
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	5 cut(s)	226, 492, 528, 798, 817
DpnI	GATC	2 cut(s)	597, 735
DpnII	GATC	2 cut(s)	595, 733
EaeI	YGGCCR	1 cut(s)	438
Eam1104I	CTCTTC	2 cut(s)	165, 759
EarI	CTCTTC	2 cut(s)	165, 759
Ecl136II	GAGCTC	1 cut(s)	70
Eco130I	CCWWGG	2 cut(s)	321, 916
Eco24I	GRGCYC	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	834
Eco32I	GATATC	2 cut(s)	621, 757
Eco47I	GGWCC	1 cut(s)	444
Eco47III	AGCGCT	1 cut(s)	114
Eco53kI	GAGCTC	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	70
EcoRII	CCWGG	2 cut(s)	440, 1203
EcoRV	GATATC	2 cut(s)	621, 757
EcoT14I	CCWWGG	2 cut(s)	321, 916
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	2 cut(s)	321, 916
FaeI	CATG	6 cut(s)	302, 325, 404, 458, 614, 1117
FaqI	GGGAC	2 cut(s)	71, 140
FatI	CATG	6 cut(s)	298, 321, 400, 454, 610, 1113
FauI	CCCGC	1 cut(s)	236
Fnu4HI	GCNGC	2 cut(s)	785, 1109
FokI	GGATG	6 cut(s)	290, 325, 404, 578, 584, 1134
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	2 cut(s)	785, 1109
FspBI	CTAG	1 cut(s)	845
GlaI	GCGC	2 cut(s)	114, 725
GluI	GCNGC	2 cut(s)	785, 1109
GsaI	CCCAGC	2 cut(s)	234, 745
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	5 cut(s)	337, 440, 589, 698, 921
HapII	CCGG	3 cut(s)	47, 123, 338
HhaI	GCGC	2 cut(s)	115, 726
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	6 cut(s)	302, 325, 404, 458, 614, 1117
Hin6I	GCGC	2 cut(s)	113, 724
HinP1I	GCGC	2 cut(s)	113, 724
HincII	GTYRAC	1 cut(s)	1163
HindII	GTYRAC	1 cut(s)	1163
HindIII	AAGCTT	1 cut(s)	964
HinfI	GANTC	5 cut(s)	57, 251, 379, 950, 1132
HpaII	CCGG	3 cut(s)	47, 123, 338
HphI	GGTGA	3 cut(s)	16, 137, 430
Hpy166II	GTNNAC	2 cut(s)	120, 1163
Hpy188I	TCNGA	3 cut(s)	110, 378, 801
Hpy188III	TCNNGA	9 cut(s)	88, 289, 389, 494, 581, 599, 676, 970, 1073
Hpy8I	GTNNAC	2 cut(s)	120, 1163
Hpy99I	CGWCG	2 cut(s)	83, 86
HpyAV	CCTTC	7 cut(s)	44, 124, 301, 842, 895, 967, 1182
HpyCH4III	ACNGT	1 cut(s)	357
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	5 cut(s)	120, 875, 1111, 1142, 1178
HpyF10VI	GCNNNNNNNGC	1 cut(s)	533
HpyF3I	CTNAG	5 cut(s)	226, 492, 528, 798, 817
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	6 cut(s)	302, 325, 404, 458, 614, 1117
HspAI	GCGC	2 cut(s)	113, 724
KspI	CCGCGG	1 cut(s)	99
Kzo9I	GATC	2 cut(s)	595, 733
LmnI	GCTCC	5 cut(s)	145, 240, 478, 779, 851
Lsp1109I	GCAGC	1 cut(s)	1095
LweI	GCATC	1 cut(s)	592
MaeI	CTAG	1 cut(s)	845
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	2 cut(s)	597, 735
MbiI	CCGCTC	1 cut(s)	243
MboI	GATC	2 cut(s)	595, 733
MboII	GAAGA	4 cut(s)	66, 152, 764, 776
MflI	RGATCY	1 cut(s)	733
MhlI	GDGCHC	2 cut(s)	72, 122
MlsI	TGGCCA	1 cut(s)	440
MluCI	AATT	8 cut(s)	103, 269, 283, 553, 833, 983, 1005, 1151
MluNI	TGGCCA	1 cut(s)	440
MlyI	GAGTC	3 cut(s)	260, 373, 944
MmeI	TCCRAC	2 cut(s)	729, 840
Mox20I	TGGCCA	1 cut(s)	440
MscI	TGGCCA	1 cut(s)	440
MseI	TTAA	7 cut(s)	294, 423, 561, 651, 1008, 1082, 1184
MslI	CAYNNNNRTG	2 cut(s)	390, 1116
Msp20I	TGGCCA	1 cut(s)	440
MspA1I	CMGCKG	2 cut(s)	98, 230
MspI	CCGG	3 cut(s)	47, 123, 338
MspR9I	CCNGG	2 cut(s)	442, 1205
MvaI	CCWGG	2 cut(s)	442, 1205
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	533
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	2 cut(s)	595, 733
NlaIII	CATG	6 cut(s)	302, 325, 404, 458, 614, 1117
NlaIV	GGNNCC	2 cut(s)	990, 1170
NspI	RCATGY	3 cut(s)	404, 458, 1117
PciI	ACATGT	1 cut(s)	1113
PfeI	GAWTC	2 cut(s)	57, 1132
PflFI	GACNNNGTC	2 cut(s)	83, 793
PflMI	CCANNNNNTGG	1 cut(s)	998
PinAI	ACCGGT	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	786, 1110
PleI	GAGTC	3 cut(s)	259, 373, 944
PpsI	GAGTC	3 cut(s)	259, 373, 944
PscI	ACATGT	1 cut(s)	1113
Psp124BI	GAGCTC	1 cut(s)	72
Psp6I	CCWGG	2 cut(s)	440, 1203
PspFI	CCCAGC	2 cut(s)	230, 741
PspGI	CCWGG	2 cut(s)	440, 1203
PspN4I	GGNNCC	2 cut(s)	990, 1170
PspPI	GGNCC	4 cut(s)	335, 444, 588, 697
PstI	CTGCAG	1 cut(s)	1180
PsuI	RGATCY	1 cut(s)	733
PsyI	GACNNNGTC	2 cut(s)	83, 793
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
RseI	CAYNNNNRTG	2 cut(s)	390, 1116
SacI	GAGCTC	1 cut(s)	72
SacII	CCGCGG	1 cut(s)	99
SaqAI	TTAA	7 cut(s)	294, 423, 561, 651, 1008, 1082, 1184
SatI	GCNGC	2 cut(s)	785, 1109
Sau3AI	GATC	2 cut(s)	595, 733
Sau96I	GGNCC	4 cut(s)	335, 444, 588, 697
ScaI	AGTACT	1 cut(s)	463
SchI	GAGTC	3 cut(s)	260, 373, 944
ScrFI	CCNGG	2 cut(s)	442, 1205
SduI	GDGCHC	2 cut(s)	72, 122
SfaNI	GCATC	1 cut(s)	592
SfcI	CTRYAG	1 cut(s)	1176
Sfr303I	CCGCGG	1 cut(s)	99
SgrAI	CRCCGGYG	1 cut(s)	122
SgrBI	CCGCGG	1 cut(s)	99
SinI	GGWCC	1 cut(s)	444
SmiMI	CAYNNNNRTG	2 cut(s)	390, 1116
Sse9I	AATT	8 cut(s)	103, 269, 283, 553, 833, 983, 1005, 1151
SsiI	CCGC	8 cut(s)	96, 98, 150, 187, 243, 509, 784, 956
SspMI	CTAG	1 cut(s)	845
SstI	GAGCTC	1 cut(s)	72
StyD4I	CCNGG	2 cut(s)	440, 1203
StyI	CCWWGG	2 cut(s)	321, 916
TaaI	ACNGT	1 cut(s)	357
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	5 cut(s)	254, 266, 273, 288, 1074
TasI	AATT	8 cut(s)	103, 269, 283, 553, 833, 983, 1005, 1151
TatI	WGTACW	1 cut(s)	461
TauI	GCSGC	1 cut(s)	787
TfiI	GAWTC	2 cut(s)	57, 1132
Tru1I	TTAA	7 cut(s)	294, 423, 561, 651, 1008, 1082, 1184
Tru9I	TTAA	7 cut(s)	294, 423, 561, 651, 1008, 1082, 1184
TscAI	CASTG	1 cut(s)	984
TseI	GCWGC	1 cut(s)	1108
TspDTI	ATGAA	3 cut(s)	152, 777, 1211
TspRI	CASTG	1 cut(s)	984
Tth111I	GACNNNGTC	2 cut(s)	83, 793
Van91I	CCANNNNNTGG	1 cut(s)	998
VneI	GTGCAC	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	444
XapI	RAATTY	3 cut(s)	103, 269, 283
XceI	RCATGY	3 cut(s)	404, 458, 1117
XspI	CTAG	1 cut(s)	845
ZraI	GACGTC	1 cut(s)	82
ZrmI	AGTACT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.