Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002978

Physical Location & Seq

Genomic Coordinates Forward (+)

14366072 .. 14370642

Gene Structure 4571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G116600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGGAAGGCCAAGGTGCTTTCTTGACATTAGCATAGGAGAAGAACTTGAAGGCCGGATAGTGGTGGAGCTTTACAATGATGCGGTGCCTAAAACCGCCGAGAATTTCAGAGCTCTCTGTACTGGTGAGAAGGGCATTGGACCAAACACTGGTGCTCCTCTCCATTACAAGGGAGTTCGTTTTCATCGTGTTATCAAAGGTTTTATGATTCAAGGGGGTGATATTTCTGCTGGAGATGGTACTGGGGGAGAATCTATATATGGATTGAAATTTGAGGATGAAAATTTTGAATTGAAACACGAAAGGAAAGGCATGTTATCGATGGCTAATTCTGGTCAGGACACCAATGGGTCTCAGTTTTTCATCACAACAACTCGCACTTCTCATCTAGATGGGAAACATGTTGTTTTTGGGAAGGTAGTTAAAGGAATGGGAGTTGTCCGTTCAATTGAGCACATAACCACTGCTGATAGTGATTGTCCCAATGTTGATGTTATAATTGCGGATTGTGGAGAAATTGCTGAGGGGGAAGATGACGGAGTTTCTAATCTTTTCAAAGATGGTGATATTTATCCTGATTGGCCAGCCGATATTGATGAGAGTCCTATTGATCTTTCTTGGTGGATGACCTCTGTAGAGTCAATTAAGGCTTTTGGTAATGAATATTATAAGAAACAAGACTATAAGATGGCTCTTAAAAAGTACCGAAAGTCTTTACGCTATCTGGATATTTGCTGGGAGAAAGATGGAATTGATGAAGAGAGGAGTTCAAGTTTGAGAAAGACCAAGTCACAGATTTTCACAAACAGCTCTGCTTGTAAATTGAAATTGGGGGACCTGAAAGGAGCACTGTTAGACACCGACTTTGCAATGAGGGATGGAGAAGATAATGTTAAGGCTTTGTTTCGCCAAGGTCAGGCATACATGGCGCTTAATGATATTGATGCTGCAGTTGAAAGCTTCAAAAGGGCATTGGATCTGGAGCCAACTGATGCTGGAATAAAGAAGGAGCTTGCCGCTGCAAAGAAGAAGATTTCTGATAGACGTGATAAGGAGAAGAAGGCCTACAGCAAGATGTTCCAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000413 GO:0003006 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010022 GO:0010050 GO:0010073 GO:0010582 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090567 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04217 ko04218 map04217 map04218

Pfam Domains

Protein Families

Pro_isomerase TPR_1 TPR_2

Protein Analysis

363

Amino Acids

40.36

Weight (kDa)

5.7

Isoelectric Point (pI)

27.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15790
fragaria_vesca	FvH4_1g15560 FvH4_1g15560 FvH4_1g15560 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830
malus_domestica	MD02G1167800.v1.1 MD05G1075200.v1.1 MD15G1280000.v1.1
prunus_persica	Prupe.7G137400_v2.0.a1 Prupe.8G116600_v2.0.a1 Prupe.8G116600_v2.0.a1
pyrus_communis	pycom02g13470 pycom05g06840
rosa_chinensis	RchiOBHm_Chr2g0104891 RchiOBHm_Chr6g0259041
rosa_laevigata	RLG00000014561 RLG00000017365
rosa_multiflora	Rmu_sc0003419.1_g000006 Rmu_ssc0000050.1_g000113
rosa_roxburghii	Rroxscaffold_2G00138700 Rroxscaffold_7G00206290 Rroxscaffold_7G00206440
rosa_rugosa	Rorug02G0123600 Rorug02G0123700 Rorug05G0585100 Rorug05G0585200
rosa_samantha	Rh2AG173900 Rh2BG181500 Rh2CG178800 Rh2DG180200 Rh6AG101400
rosa_wichuraiana	Rw2G013680 Rw6G008820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	497, 669
AccB1I	GGYRCC	1 cut(s)	85
AccB7I	CCANNNNNTGG	1 cut(s)	149
AciI	CCGC	4 cut(s)	83, 96, 503, 1017
AclWI	GGATC	1 cut(s)	984
AcoI	YGGCCR	1 cut(s)	581
AcsI	RAATTY	3 cut(s)	103, 269, 283
AfaI	GTAC	3 cut(s)	121, 241, 704
AfiI	CCNNNNNNNGG	4 cut(s)	61, 149, 169, 916
AflIII	ACRYGT	1 cut(s)	400
AjiI	CACGTC	1 cut(s)	1046
AluBI	AGCT	5 cut(s)	70, 113, 810, 960, 1012
AluI	AGCT	5 cut(s)	70, 113, 810, 960, 1012
Alw21I	GWGCWC	4 cut(s)	115, 157, 456, 850
Alw26I	GTCTC	1 cut(s)	357
AlwI	GGATC	1 cut(s)	984
AoxI	GGCC	4 cut(s)	8, 52, 581, 1062
ApeKI	GCWGC	2 cut(s)	947, 1019
ApoI	RAATTY	3 cut(s)	103, 269, 283
ArsI	GACNNNNNNTTYG	2 cut(s)	848, 880
AspLEI	GCGC	1 cut(s)	931
AspS9I	GGNCC	2 cut(s)	140, 835
AsuHPI	GGTGA	3 cut(s)	137, 230, 575
AvaII	GGWCC	2 cut(s)	140, 835
BalI	TGGCCA	1 cut(s)	583
BanI	GGYRCC	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	115
BarI	GAAGNNNNNNTAC	2 cut(s)	1049, 1081
Bbv12I	GWGCWC	4 cut(s)	115, 157, 456, 850
BbvCI	CCTCAGC	1 cut(s)	522
BbvI	GCAGC	2 cut(s)	934, 1006
BccI	CCATC	7 cut(s)	230, 316, 386, 554, 682, 740, 872
BcoDI	GTCTC	1 cut(s)	357
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	3 cut(s)	633, 948, 1066
BfoI	RGCGCY	1 cut(s)	932
BisI	GCNGC	3 cut(s)	948, 1017, 1020
BlsI	GCNGC	3 cut(s)	949, 1018, 1021
Bme18I	GGWCC	2 cut(s)	140, 835
BmgBI	CACGTC	1 cut(s)	1046
BmgT120I	GGNCC	2 cut(s)	140, 835
BmiI	GGNNCC	3 cut(s)	87, 836, 984
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	3 cut(s)	70, 934, 982
BmuI	ACTGGG	1 cut(s)	252
BpmI	CTGGAG	2 cut(s)	252, 1001
Bpu10I	CCTNAGC	1 cut(s)	522
Bsa29I	ATCGAT	1 cut(s)	320
BsaBI	GATNNNNATC	1 cut(s)	570
BsaI	GGTCTC	1 cut(s)	357
BsaJI	CCNNGG	2 cut(s)	11, 910
BsaXI	ACNNNNNCTCC	4 cut(s)	139, 169, 757, 787
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 149, 169, 916
Bse1I	ACTGG	3 cut(s)	127, 154, 247
Bse3DI	GCAATG	1 cut(s)	876
Bse8I	GATNNNNATC	1 cut(s)	570
BseCI	ATCGAT	1 cut(s)	320
BseDI	CCNNGG	2 cut(s)	11, 910
BseGI	GGATG	3 cut(s)	283, 630, 883
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	4 cut(s)	61, 149, 169, 916
BseMI	GCAATG	1 cut(s)	876
BseMII	CTCAG	2 cut(s)	368, 513
BseNI	ACTGG	3 cut(s)	127, 154, 247
BseRI	GAGGAG	2 cut(s)	147, 778
BseXI	GCAGC	2 cut(s)	934, 1006
BseYI	CCCAGC	1 cut(s)	735
BshFI	GGCC	4 cut(s)	10, 54, 583, 1064
BshNI	GGYRCC	1 cut(s)	85
BshVI	ATCGAT	1 cut(s)	320
BsiHKAI	GWGCWC	4 cut(s)	115, 157, 456, 850
BsiSI	CCGG	1 cut(s)	55
BslFI	GGGAC	2 cut(s)	465, 848
BslI	CCNNNNNNNGG	4 cut(s)	61, 149, 169, 916
BsmAI	GTCTC	1 cut(s)	357
BsmFI	GGGAC	2 cut(s)	465, 848
BsnI	GGCC	4 cut(s)	10, 54, 583, 1064
Bso31I	GGTCTC	1 cut(s)	357
Bsp1286I	GDGCHC	4 cut(s)	115, 157, 456, 850
Bsp143I	GATC	2 cut(s)	610, 976
BspACI	CCGC	4 cut(s)	83, 96, 503, 1017
BspANI	GGCC	4 cut(s)	10, 54, 583, 1064
BspCNI	CTCAG	2 cut(s)	367, 514
BspDI	ATCGAT	1 cut(s)	320
BspLI	GGNNCC	3 cut(s)	87, 836, 984
BspMAI	CTGCAG	1 cut(s)	952
BspPI	GGATC	1 cut(s)	984
BspT107I	GGYRCC	1 cut(s)	85
BspTNI	GGTCTC	1 cut(s)	357
BsrDI	GCAATG	1 cut(s)	876
BsrI	ACTGG	3 cut(s)	127, 154, 247
BssECI	CCNNGG	2 cut(s)	11, 910
BssMI	GATC	2 cut(s)	610, 976
BssT1I	CCWWGG	2 cut(s)	11, 910
Bst4CI	ACNGT	1 cut(s)	852
Bst6I	CTCTTC	1 cut(s)	753
BstC8I	GCNNGC	2 cut(s)	585, 1014
BstDEI	CTNAG	2 cut(s)	354, 522
BstF5I	GGATG	3 cut(s)	283, 630, 883
BstH2I	RGCGCY	1 cut(s)	932
BstHHI	GCGC	1 cut(s)	931
BstKTI	GATC	2 cut(s)	613, 979
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	2 cut(s)	610, 976
BstMWI	GCNNNNNNNGC	1 cut(s)	926
BstNSI	RCATGY	2 cut(s)	316, 404
BstSFI	CTRYAG	3 cut(s)	633, 948, 1066
BstV1I	GCAGC	2 cut(s)	934, 1006
BstX2I	RGATCY	1 cut(s)	976
BstYI	RGATCY	1 cut(s)	976
Bsu15I	ATCGAT	1 cut(s)	320
BsuRI	GGCC	4 cut(s)	10, 54, 583, 1064
BsuTUI	ATCGAT	1 cut(s)	320
BtrI	CACGTC	1 cut(s)	1046
BtsCI	GGATG	3 cut(s)	283, 630, 883
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	3 cut(s)	147, 462, 848
Cac8I	GCNNGC	2 cut(s)	585, 1014
CfoI	GCGC	1 cut(s)	931
Cfr13I	GGNCC	2 cut(s)	140, 835
ClaI	ATCGAT	1 cut(s)	320
Csp6I	GTAC	3 cut(s)	120, 240, 703
CviAII	CATG	3 cut(s)	313, 401, 925
CviQI	GTAC	3 cut(s)	120, 240, 703
DdeI	CTNAG	2 cut(s)	354, 522
DpnI	GATC	2 cut(s)	612, 978
DpnII	GATC	2 cut(s)	610, 976
EaeI	YGGCCR	1 cut(s)	581
Eam1104I	CTCTTC	1 cut(s)	753
EarI	CTCTTC	1 cut(s)	753
Ecl136II	GAGCTC	1 cut(s)	113
Eco130I	CCWWGG	2 cut(s)	11, 910
Eco147I	AGGCCT	1 cut(s)	1064
Eco24I	GRGCYC	1 cut(s)	115
Eco31I	GGTCTC	1 cut(s)	357
Eco47I	GGWCC	2 cut(s)	140, 835
Eco53kI	GAGCTC	1 cut(s)	113
EcoICRI	GAGCTC	1 cut(s)	113
EcoO109I	RGGNCCY	1 cut(s)	835
EcoT14I	CCWWGG	2 cut(s)	11, 910
EcoT38I	GRGCYC	1 cut(s)	115
ErhI	CCWWGG	2 cut(s)	11, 910
FaeI	CATG	3 cut(s)	316, 404, 928
FaqI	GGGAC	2 cut(s)	465, 848
FatI	CATG	3 cut(s)	312, 400, 924
Fnu4HI	GCNGC	3 cut(s)	948, 1017, 1020
FokI	GGATG	3 cut(s)	290, 637, 890
FriOI	GRGCYC	1 cut(s)	115
Fsp4HI	GCNGC	3 cut(s)	948, 1017, 1020
FspBI	CTAG	1 cut(s)	389
GlaI	GCGC	1 cut(s)	930
GluI	GCNGC	3 cut(s)	948, 1017, 1020
GsaI	CCCAGC	1 cut(s)	739
GsuI	CTGGAG	2 cut(s)	252, 1001
HaeII	RGCGCY	1 cut(s)	932
HaeIII	GGCC	4 cut(s)	10, 54, 583, 1064
HapII	CCGG	1 cut(s)	55
HhaI	GCGC	1 cut(s)	931
Hin1II	CATG	3 cut(s)	316, 404, 928
Hin6I	GCGC	1 cut(s)	929
HinP1I	GCGC	1 cut(s)	929
HindIII	AAGCTT	1 cut(s)	958
HinfI	GANTC	4 cut(s)	208, 251, 601, 638
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	3 cut(s)	137, 230, 575
Hpy188I	TCNGA	2 cut(s)	110, 1039
Hpy188III	TCNNGA	6 cut(s)	23, 338, 389, 575, 725, 980
HpyAV	CCTTC	5 cut(s)	44, 124, 409, 1000, 1054
HpyCH4III	ACNGT	1 cut(s)	852
HpyCH4IV	ACGT	1 cut(s)	1045
HpyCH4V	TGCA	3 cut(s)	869, 950, 1022
HpyF10VI	GCNNNNNNNGC	1 cut(s)	926
HpyF3I	CTNAG	2 cut(s)	354, 522
HpySE526I	ACGT	1 cut(s)	1045
Hsp92II	CATG	3 cut(s)	316, 404, 928
HspAI	GCGC	1 cut(s)	929
Kzo9I	GATC	2 cut(s)	610, 976
LmnI	GCTCC	5 cut(s)	67, 160, 845, 982, 1009
Lsp1109I	GCAGC	2 cut(s)	934, 1006
LweI	GCATC	3 cut(s)	70, 934, 982
MaeI	CTAG	1 cut(s)	389
MaeII	ACGT	1 cut(s)	1045
MaeIII	GTNAC	1 cut(s)	789
MalI	GATC	2 cut(s)	612, 978
MboI	GATC	2 cut(s)	610, 976
MboII	GAAGA	7 cut(s)	53, 542, 770, 896, 1039, 1042, 1069
MfeI	CAATTG	1 cut(s)	447
MflI	RGATCY	1 cut(s)	976
MhlI	GDGCHC	4 cut(s)	115, 157, 456, 850
MlsI	TGGCCA	1 cut(s)	583
MluNI	TGGCCA	1 cut(s)	583
MlyI	GAGTC	2 cut(s)	610, 647
MnlI	CCTC	6 cut(s)	168, 268, 517, 640, 756, 867
Mox20I	TGGCCA	1 cut(s)	583
MscI	TGGCCA	1 cut(s)	583
MseI	TTAA	5 cut(s)	423, 645, 696, 894, 933
MslI	CAYNNNNRTG	1 cut(s)	390
Msp20I	TGGCCA	1 cut(s)	583
MspA1I	CMGCKG	1 cut(s)	1019
MspI	CCGG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	447
MwoI	GCNNNNNNNGC	1 cut(s)	926
NdeII	GATC	2 cut(s)	610, 976
NlaIII	CATG	3 cut(s)	316, 404, 928
NlaIV	GGNNCC	3 cut(s)	87, 836, 984
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	789
NspI	RCATGY	2 cut(s)	316, 404
PceI	AGGCCT	1 cut(s)	1064
PciI	ACATGT	1 cut(s)	400
PcsI	WCGNNNNNNNCGW	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	208, 251
PflFI	GACNNNGTC	1 cut(s)	787
PflMI	CCANNNNNTGG	1 cut(s)	149
PkrI	GCNGC	3 cut(s)	949, 1018, 1021
PleI	GAGTC	2 cut(s)	609, 646
PpsI	GAGTC	2 cut(s)	609, 646
PpuMI	RGGWCCY	1 cut(s)	835
PscI	ACATGT	1 cut(s)	400
PsiI	TTATAA	2 cut(s)	497, 669
Psp124BI	GAGCTC	1 cut(s)	115
Psp5II	RGGWCCY	1 cut(s)	835
PspFI	CCCAGC	1 cut(s)	735
PspN4I	GGNNCC	3 cut(s)	87, 836, 984
PspPI	GGNCC	2 cut(s)	140, 835
PspPPI	RGGWCCY	1 cut(s)	835
PstI	CTGCAG	1 cut(s)	952
PsuI	RGATCY	1 cut(s)	976
PsyI	GACNNNGTC	1 cut(s)	787
RsaI	GTAC	3 cut(s)	121, 241, 704
RsaNI	GTAC	3 cut(s)	120, 240, 703
RseI	CAYNNNNRTG	1 cut(s)	390
SacI	GAGCTC	1 cut(s)	115
SaqAI	TTAA	5 cut(s)	423, 645, 696, 894, 933
SatI	GCNGC	3 cut(s)	948, 1017, 1020
Sau3AI	GATC	2 cut(s)	610, 976
Sau96I	GGNCC	2 cut(s)	140, 835
SchI	GAGTC	2 cut(s)	610, 647
SduI	GDGCHC	4 cut(s)	115, 157, 456, 850
SfaNI	GCATC	3 cut(s)	70, 934, 982
SfcI	CTRYAG	3 cut(s)	633, 948, 1066
SinI	GGWCC	2 cut(s)	140, 835
SmiMI	CAYNNNNRTG	1 cut(s)	390
SseBI	AGGCCT	1 cut(s)	1064
SsiI	CCGC	4 cut(s)	83, 96, 503, 1017
SspI	AATATT	1 cut(s)	665
SspMI	CTAG	1 cut(s)	389
SstI	GAGCTC	1 cut(s)	115
StuI	AGGCCT	1 cut(s)	1064
StyI	CCWWGG	2 cut(s)	11, 910
TaaI	ACNGT	1 cut(s)	852
TaiI	ACGT	1 cut(s)	1048
TaqI	TCGA	1 cut(s)	320
TatI	WGTACW	1 cut(s)	119
TauI	GCSGC	1 cut(s)	1019
TfiI	GAWTC	2 cut(s)	208, 251
Tru1I	TTAA	5 cut(s)	423, 645, 696, 894, 933
Tru9I	TTAA	5 cut(s)	423, 645, 696, 894, 933
TscAI	CASTG	3 cut(s)	154, 469, 855
TseFI	GTSAC	1 cut(s)	789
TseI	GCWGC	2 cut(s)	947, 1019
Tsp45I	GTSAC	1 cut(s)	789
TspDTI	ATGAA	5 cut(s)	173, 294, 352, 675, 771
TspGWI	ACGGA	2 cut(s)	431, 552
TspRI	CASTG	3 cut(s)	154, 469, 855
Tth111I	GACNNNGTC	1 cut(s)	787
Van91I	CCANNNNNTGG	1 cut(s)	149
VpaK11BI	GGWCC	2 cut(s)	140, 835
XapI	RAATTY	3 cut(s)	103, 269, 283
XbaI	TCTAGA	1 cut(s)	388
XceI	RCATGY	2 cut(s)	316, 404
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.