Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002978

Physical Location & Seq

Genomic Coordinates Forward (+)

24899719 .. 24902902

Gene Structure 3184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1280000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGGGAGGCCAAGGTGCTACTTGGACATAACCATTGGAGGAGAGCTAGAAGGAAGAGTAGTAGTGGAACTCTACAATGACATTGTCCCCAAAACAGCTAAGAATTTCAGAGCTCTCTGCACTGGTGAGAGGGGCATTGGCCCCCACACCAACGCTCCTCTGTATTACAAGGTTGTTTGTTTTCACCACGTTATCAGAGGTTTTATGATACAAGGTGGAGACATTTCGGCAGGAAATGGCAGCGGGGGAGAGTTGATTTATGGGTTGAAGTTTGAAGATGAAAACTTTGACATAAAGCATGAGAGAAAATGGATGCTATCCATGGCTAATAAGGGCCCTGACACCAATGGCTCTCAGTTTTTCATTACCACCACTCGGACTTCCCATCTTGATGGGAAACATGTTGCGTTTGGAAAGGTGATCAAGGGCATGGGCGTGGTTCGTTCGGTTGAACATTTGAACATGAAAGATGGCGACATGCACATCGAAGAAGTCGTTATTTCGGATTGTGGGCAGCTTCCTGAGAGAGCAGATGAGGGGGTGTGTAACTTCTTCAAAGATTGTGATGTTTATCCTGATTGGCCTGTTGATCTTGATACAAAACCAGATGACATTTCTTGGTGGGTCACGGCTGTGGGTGCTATTAAGGCCATTGGAAACCAACAGTTCAAGAAGCAAGACTATAAGATGGCCCTTAGAAAGTATCGCAAGGCTTTGCGCTACGTGGATATATGCTGGGAGCTGGAAGAAATTGATGAAGAAGCGAACTCCTCTTTGCGAAAGACAAAGTCTCAGATATTTACTAATAGCTCAGCTTGTAGGTTGAAATTAGGAGACCTAGATGGAGCATTGTTGGACACTGACTTTGCATTGCGTGACTGGGAAGACAATGTGAAGGCTTTGTTTCGCCAAGGCCAGACCTATATGGCACTCAATGACATTGACGCTACAGTTGAAAGCTTCAAGAAGGCACTAGAGTTGGAACCAAATGATGGAGGAATTAAGAAAGAGCTTCTGGTTGCTAAGAAGAAGGTTGCTAATAGGTCTGAGCAAGAAAAAAAAGCATATTCAAGAATGTTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04217 ko04218 map04217 map04218

Pfam Domains

Protein Families

Pro_isomerase TPR_1 TPR_2

Protein Analysis

362

Amino Acids

40.82

Weight (kDa)

6.18

Isoelectric Point (pI)

26.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	7 - 171	1.6e-43	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
TPR_1	PF00515	298 - 331	5.5e-07	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15790
fragaria_vesca	FvH4_1g15560 FvH4_1g15560 FvH4_1g15560 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830
malus_domestica	MD02G1167800.v1.1 MD05G1075200.v1.1 MD15G1280000.v1.1
prunus_persica	Prupe.7G137400_v2.0.a1 Prupe.8G116600_v2.0.a1 Prupe.8G116600_v2.0.a1
pyrus_communis	pycom02g13470 pycom05g06840
rosa_chinensis	RchiOBHm_Chr2g0104891 RchiOBHm_Chr6g0259041
rosa_laevigata	RLG00000014561 RLG00000017365
rosa_multiflora	Rmu_sc0003419.1_g000006 Rmu_ssc0000050.1_g000113
rosa_roxburghii	Rroxscaffold_2G00138700 Rroxscaffold_7G00206290 Rroxscaffold_7G00206440
rosa_rugosa	Rorug02G0123600 Rorug02G0123700 Rorug05G0585100 Rorug05G0585200
rosa_samantha	Rh2AG173900 Rh2BG181500 Rh2CG178800 Rh2DG180200 Rh6AG101400
rosa_wichuraiana	Rw2G013680 Rw6G008820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	992
AciI	CCGC	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	103
AfiI	CCNNNNNNNGG	2 cut(s)	375, 992
AflIII	ACRYGT	1 cut(s)	400
AleI	CACNNNNGTG	1 cut(s)	632
AluBI	AGCT	9 cut(s)	46, 98, 113, 517, 742, 810, 815, 960, 1012
AluI	AGCT	9 cut(s)	46, 98, 113, 517, 742, 810, 815, 960, 1012
Alw21I	GWGCWC	1 cut(s)	115
Alw26I	GTCTC	3 cut(s)	213, 795, 828
AoxI	GGCC	7 cut(s)	8, 139, 334, 581, 648, 690, 913
ApaI	GGGCCC	1 cut(s)	338
ApeKI	GCWGC	2 cut(s)	240, 514
ApoI	RAATTY	1 cut(s)	103
ArsI	GACNNNNNNTTYG	2 cut(s)	848, 880
AspLEI	GCGC	1 cut(s)	720
AspS9I	GGNCC	4 cut(s)	140, 334, 335, 691
AsuHPI	GGTGA	3 cut(s)	137, 176, 430
BaeGI	GKGCMC	1 cut(s)	338
BanII	GRGCYC	2 cut(s)	115, 338
BbsI	GAAGAC	1 cut(s)	891
Bbv12I	GWGCWC	1 cut(s)	115
BbvI	GCAGC	2 cut(s)	252, 526
BccI	CCATC	6 cut(s)	386, 393, 464, 682, 836, 986
BceAI	ACGGC	1 cut(s)	645
BclI	TGATCA	1 cut(s)	420
BcoDI	GTCTC	3 cut(s)	213, 795, 828
BfaI	CTAG	3 cut(s)	47, 839, 974
BfmI	CTRYAG	1 cut(s)	948
BisI	GCNGC	2 cut(s)	241, 515
BlpI	GCTNAGC	1 cut(s)	811
BlsI	GCNGC	2 cut(s)	242, 516
BmgT120I	GGNCC	4 cut(s)	140, 334, 335, 691
BmiI	GGNNCC	3 cut(s)	142, 336, 984
BmrI	ACTGGG	1 cut(s)	889
BmsI	GCATC	1 cut(s)	303
BmuI	ACTGGG	1 cut(s)	889
BpiI	GAAGAC	1 cut(s)	891
Bpu1102I	GCTNAGC	1 cut(s)	811
BsaAI	YACGTR	1 cut(s)	724
BsaBI	GATNNNNATC	1 cut(s)	570
BsaI	GGTCTC	1 cut(s)	828
BsaJI	CCNNGG	3 cut(s)	11, 321, 910
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	2 cut(s)	375, 992
Bse1I	ACTGG	2 cut(s)	127, 884
Bse3DI	GCAATG	1 cut(s)	869
Bse8I	GATNNNNATC	1 cut(s)	570
BseDI	CCNNGG	3 cut(s)	11, 321, 910
BseGI	GGATG	1 cut(s)	318
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	2 cut(s)	375, 992
BseMI	GCAATG	1 cut(s)	869
BseMII	CTCAG	5 cut(s)	368, 513, 806, 825, 1038
BseNI	ACTGG	2 cut(s)	127, 884
BseRI	GAGGAG	3 cut(s)	54, 147, 760
BseSI	GKGCMC	1 cut(s)	338
BseXI	GCAGC	2 cut(s)	252, 526
BseYI	CCCAGC	1 cut(s)	735
BsgI	GTGCAG	1 cut(s)	103
BshFI	GGCC	7 cut(s)	10, 141, 336, 583, 650, 692, 915
BsiHKAI	GWGCWC	1 cut(s)	115
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	2 cut(s)	375, 992
BsmAI	GTCTC	3 cut(s)	213, 795, 828
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	7 cut(s)	10, 141, 336, 583, 650, 692, 915
Bso31I	GGTCTC	1 cut(s)	828
Bsp120I	GGGCCC	1 cut(s)	334
Bsp1286I	GDGCHC	2 cut(s)	115, 338
Bsp143I	GATC	2 cut(s)	420, 589
Bsp1720I	GCTNAGC	1 cut(s)	811
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	1 cut(s)	243
BspANI	GGCC	7 cut(s)	10, 141, 336, 583, 650, 692, 915
BspCNI	CTCAG	5 cut(s)	367, 514, 805, 824, 1039
BspLI	GGNNCC	3 cut(s)	142, 336, 984
BspTNI	GGTCTC	1 cut(s)	828
BsrDI	GCAATG	1 cut(s)	869
BsrI	ACTGG	2 cut(s)	127, 884
BssECI	CCNNGG	3 cut(s)	11, 321, 910
BssMI	GATC	2 cut(s)	420, 589
BssT1I	CCWWGG	3 cut(s)	11, 321, 910
Bst4CI	ACNGT	2 cut(s)	666, 952
Bst6I	CTCTTC	1 cut(s)	49
BstBAI	YACGTR	1 cut(s)	724
BstDEI	CTNAG	8 cut(s)	99, 354, 522, 695, 792, 811, 1023, 1047
BstDSI	CCRYGG	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	720
BstKTI	GATC	2 cut(s)	423, 592
BstMAI	GTCTC	3 cut(s)	213, 795, 828
BstMBI	GATC	2 cut(s)	420, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	638, 647
BstNSI	RCATGY	2 cut(s)	404, 481
BstSFI	CTRYAG	1 cut(s)	948
BstSLI	GKGCMC	1 cut(s)	338
BstV1I	GCAGC	2 cut(s)	252, 526
BstV2I	GAAGAC	1 cut(s)	891
BstXI	CCANNNNNNTGG	1 cut(s)	392
BsuRI	GGCC	7 cut(s)	10, 141, 336, 583, 650, 692, 915
BtgI	CCRYGG	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	318
BtsIMutI	CAGTG	2 cut(s)	120, 858
CfoI	GCGC	1 cut(s)	720
Cfr13I	GGNCC	4 cut(s)	140, 334, 335, 691
CseI	GACGC	1 cut(s)	953
CviAII	CATG	6 cut(s)	299, 322, 401, 430, 463, 478
DdeI	CTNAG	8 cut(s)	99, 354, 522, 695, 792, 811, 1023, 1047
DpnI	GATC	2 cut(s)	422, 591
DpnII	GATC	2 cut(s)	420, 589
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Ecl136II	GAGCTC	1 cut(s)	113
Eco130I	CCWWGG	3 cut(s)	11, 321, 910
Eco24I	GRGCYC	2 cut(s)	115, 338
Eco31I	GGTCTC	1 cut(s)	828
Eco53kI	GAGCTC	1 cut(s)	113
EcoICRI	GAGCTC	1 cut(s)	113
EcoO109I	RGGNCCY	2 cut(s)	334, 335
EcoT14I	CCWWGG	3 cut(s)	11, 321, 910
EcoT38I	GRGCYC	2 cut(s)	115, 338
ErhI	CCWWGG	3 cut(s)	11, 321, 910
FaeI	CATG	6 cut(s)	302, 325, 404, 433, 466, 481
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	6 cut(s)	298, 321, 400, 429, 462, 477
FauI	CCCGC	1 cut(s)	236
FbaI	TGATCA	1 cut(s)	420
Fnu4HI	GCNGC	2 cut(s)	241, 515
FokI	GGATG	1 cut(s)	325
FriOI	GRGCYC	2 cut(s)	115, 338
Fsp4HI	GCNGC	2 cut(s)	241, 515
FspBI	CTAG	3 cut(s)	47, 839, 974
GlaI	GCGC	1 cut(s)	719
GluI	GCNGC	2 cut(s)	241, 515
GsaI	CCCAGC	1 cut(s)	739
HaeIII	GGCC	7 cut(s)	10, 141, 336, 583, 650, 692, 915
HgaI	GACGC	1 cut(s)	953
HhaI	GCGC	1 cut(s)	720
Hin1II	CATG	6 cut(s)	302, 325, 404, 433, 466, 481
Hin6I	GCGC	1 cut(s)	718
HinP1I	GCGC	1 cut(s)	718
HindIII	AAGCTT	1 cut(s)	958
HphI	GGTGA	3 cut(s)	137, 176, 430
Hpy188I	TCNGA	6 cut(s)	110, 197, 378, 505, 795, 1048
Hpy188III	TCNNGA	7 cut(s)	389, 521, 575, 593, 670, 964, 1071
HpyAV	CCTTC	4 cut(s)	44, 889, 961, 1024
HpyCH4III	ACNGT	2 cut(s)	666, 952
HpyCH4IV	ACGT	2 cut(s)	189, 723
HpyCH4V	TGCA	3 cut(s)	120, 481, 869
HpyF10VI	GCNNNNNNNGC	2 cut(s)	638, 647
HpyF3I	CTNAG	8 cut(s)	99, 354, 522, 695, 792, 811, 1023, 1047
HpySE526I	ACGT	2 cut(s)	189, 723
Hsp92II	CATG	6 cut(s)	302, 325, 404, 433, 466, 481
HspAI	GCGC	1 cut(s)	718
Ksp22I	TGATCA	1 cut(s)	420
Kzo9I	GATC	2 cut(s)	420, 589
LmnI	GCTCC	3 cut(s)	160, 739, 845
Lsp1109I	GCAGC	2 cut(s)	252, 526
LweI	GCATC	1 cut(s)	303
MaeI	CTAG	3 cut(s)	47, 839, 974
MaeII	ACGT	2 cut(s)	189, 723
MaeIII	GTNAC	3 cut(s)	545, 625, 875
MalI	GATC	2 cut(s)	422, 591
MboI	GATC	2 cut(s)	420, 589
MboII	GAAGA	8 cut(s)	66, 287, 500, 544, 758, 770, 896, 1039
MhlI	GDGCHC	2 cut(s)	115, 338
MluCI	AATT	4 cut(s)	103, 750, 827, 999
MmeI	TCCRAC	2 cut(s)	834, 960
MnlI	CCTC	7 cut(s)	32, 123, 168, 191, 529, 781, 989
MseI	TTAA	2 cut(s)	645, 1002
MslI	CAYNNNNRTG	3 cut(s)	390, 434, 632
MspA1I	CMGCKG	1 cut(s)	243
MwoI	GCNNNNNNNGC	2 cut(s)	638, 647
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	2 cut(s)	420, 589
NlaIII	CATG	6 cut(s)	302, 325, 404, 433, 466, 481
NlaIV	GGNNCC	3 cut(s)	142, 336, 984
NmuCI	GTSAC	2 cut(s)	625, 875
NspI	RCATGY	2 cut(s)	404, 481
OliI	CACNNNNGTG	1 cut(s)	632
PciI	ACATGT	1 cut(s)	400
PcsI	WCGNNNNNNNCGW	1 cut(s)	492
PflFI	GACNNNGTC	2 cut(s)	83, 787
PflMI	CCANNNNNTGG	1 cut(s)	992
PkrI	GCNGC	2 cut(s)	242, 516
Ppu21I	YACGTR	1 cut(s)	724
PscI	ACATGT	1 cut(s)	400
Psp124BI	GAGCTC	1 cut(s)	115
PspFI	CCCAGC	1 cut(s)	735
PspN4I	GGNNCC	3 cut(s)	142, 336, 984
PspOMI	GGGCCC	1 cut(s)	334
PspPI	GGNCC	4 cut(s)	140, 334, 335, 691
PsyI	GACNNNGTC	2 cut(s)	83, 787
RseI	CAYNNNNRTG	3 cut(s)	390, 434, 632
SacI	GAGCTC	1 cut(s)	115
SaqAI	TTAA	2 cut(s)	645, 1002
SatI	GCNGC	2 cut(s)	241, 515
Sau3AI	GATC	2 cut(s)	420, 589
Sau96I	GGNCC	4 cut(s)	140, 334, 335, 691
SduI	GDGCHC	2 cut(s)	115, 338
SfaNI	GCATC	1 cut(s)	303
SfcI	CTRYAG	1 cut(s)	948
SmiMI	CAYNNNNRTG	3 cut(s)	390, 434, 632
Sse9I	AATT	4 cut(s)	103, 750, 827, 999
SsiI	CCGC	1 cut(s)	243
SspMI	CTAG	3 cut(s)	47, 839, 974
SstI	GAGCTC	1 cut(s)	115
StyI	CCWWGG	3 cut(s)	11, 321, 910
TaaI	ACNGT	2 cut(s)	666, 952
TaiI	ACGT	2 cut(s)	192, 726
TaqI	TCGA	1 cut(s)	486
TasI	AATT	4 cut(s)	103, 750, 827, 999
Tru1I	TTAA	2 cut(s)	645, 1002
Tru9I	TTAA	2 cut(s)	645, 1002
TscAI	CASTG	2 cut(s)	127, 865
TseFI	GTSAC	2 cut(s)	625, 875
TseI	GCWGC	2 cut(s)	240, 514
Tsp45I	GTSAC	2 cut(s)	625, 875
TspDTI	ATGAA	5 cut(s)	294, 352, 479, 771, 1070
TspRI	CASTG	2 cut(s)	127, 865
Tth111I	GACNNNGTC	2 cut(s)	83, 787
Van91I	CCANNNNNTGG	1 cut(s)	992
XapI	RAATTY	1 cut(s)	103
XceI	RCATGY	2 cut(s)	404, 481
XspI	CTAG	3 cut(s)	47, 839, 974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.