Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002978

Physical Location & Seq

Genomic Coordinates Forward (+)

16012977 .. 16017802

Gene Structure 4826 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1075200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGGGAGGACAAGATGCTTTCTTGACATTAGCATAGGAGGAGAGCTCGAAGGGAGAATAGTGGTCGAGCTTTTCGACGATGTGGTACCCAAAACCGCTGAGAATTTCAGAGCTCTCTGTACTGGTGAGAAGGGCATTGGCCCCAACACTGGTGTTGCTCTCCATTACAAGGGAGTTCGTTTTCATCGTGTCATTAAAGGGTTCATGATACAAGGGGGTGATATCTCCGCTGGAGATGGTACTGGTGGAGAATCTATCTACGGAATGAAATTCGAAGATGAAAATCTTGAATTGAAACATGAAAGGAAAGGCATGTTATCCATGGCTAATTCTGGTCTGAACACCAATGGGTCTCAGTTTTTCATCACGACAACTCGCACAGCTCATTTGGATGGGAAACATGTTGTATTTGGGAAGGTAATTAAAGGAATGGGAGTTGTCCGCTCAATTGAGCACATAACCACAGCTGATGGTGATTGCCCCACTATGGATGTTATAGTTGCCGATTGTGGAGAAATCCCTGAGGGAGAAGATGATGGAATATCTAATCTTTTCAAGGATGGTGATGTTTATCCTGATTGGCCTGCTGACCTTGATGAGACTCCTGAAGATCTTTCTTGGTGGATGACTTCTGTAGATTCAATTAAGGGTTTCGGAAACGAATATTACAAGAAACAAGACTATAAGACGGCTCTTAAAAAATATCGCAAGTCTTTACGCTATCTGGATATATGCTGGGAGAAAGATGGAATTGATGAAGAGAAGAGTTCAAGTTTGAGAAAGACCAAGTCACAGATTTTCACAAACAGCTCTGCTTGTAAGTTGAAGTTGGGGGATCTGAAAGGGGCACTGTTAGACACTGACTTTGCAATGAGGGATGGAGAAGATAATGTTAAAGCTTTGTTTCGACAAGGTCAGGCATACATGGCGCTTAACGATGTTGATGCTGCAGTTGAAAGCTTCAAAAAAGCATTGGATTTGGAGCCAAATGATGCTGGAATTAAAAAGGAGTATGCTGTTGCAAAGAAGAAGATTGCTGATAGACGTGATAAAGAGAAAAAGGCCTACAGCAAGATGTTCCAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000413 GO:0003006 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010022 GO:0010050 GO:0010073 GO:0010582 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090567 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04217 ko04218 map04217 map04218

Pfam Domains

Protein Families

Pro_isomerase TPR_1 TPR_2

Protein Analysis

363

Amino Acids

40.25

Weight (kDa)

5.7

Isoelectric Point (pI)

21.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	8 - 171	1.1e-49	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
TPR_CcmH_CycH	PF23914	297 - 352	1.2e-06	Cytochrome c-type biogenesis protein H TPR domain
TPR_1	PF00515	298 - 331	3.8e-08	Tetratricopeptide repeat
TPR_2	PF07719	299 - 331	1e-07	Tetratricopeptide repeat
TPR_8	PF13181	299 - 331	5.1e-07	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15790
fragaria_vesca	FvH4_1g15560 FvH4_1g15560 FvH4_1g15560 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830 FvH4_2g06830
malus_domestica	MD02G1167800.v1.1 MD05G1075200.v1.1 MD15G1280000.v1.1
prunus_persica	Prupe.7G137400_v2.0.a1 Prupe.8G116600_v2.0.a1 Prupe.8G116600_v2.0.a1
pyrus_communis	pycom02g13470 pycom05g06840
rosa_chinensis	RchiOBHm_Chr2g0104891 RchiOBHm_Chr6g0259041
rosa_laevigata	RLG00000014561 RLG00000017365
rosa_multiflora	Rmu_sc0003419.1_g000006 Rmu_ssc0000050.1_g000113
rosa_roxburghii	Rroxscaffold_2G00138700 Rroxscaffold_7G00206290 Rroxscaffold_7G00206440
rosa_rugosa	Rorug02G0123600 Rorug02G0123700 Rorug05G0585100 Rorug05G0585200
rosa_samantha	Rh2AG173900 Rh2BG181500 Rh2CG178800 Rh2DG180200 Rh6AG101400
rosa_wichuraiana	Rw2G013680 Rw6G008820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	85
AccB1I	GGYRCC	1 cut(s)	85
AccBSI	CCGCTC	1 cut(s)	444
AciI	CCGC	3 cut(s)	96, 228, 442
AclWI	GGATC	1 cut(s)	843
AcsI	RAATTY	2 cut(s)	103, 269
AcuI	CTGAAG	1 cut(s)	627
AfaI	GTAC	3 cut(s)	87, 121, 241
AfiI	CCNNNNNNNGG	3 cut(s)	149, 169, 487
AflIII	ACRYGT	1 cut(s)	400
AgsI	TTSAA	8 cut(s)	290, 295, 556, 642, 771, 826, 956, 964
AjiI	CACGTC	1 cut(s)	1046
AluBI	AGCT	8 cut(s)	46, 70, 113, 383, 467, 810, 899, 960
AluI	AGCT	8 cut(s)	46, 70, 113, 383, 467, 810, 899, 960
Alw21I	GWGCWC	3 cut(s)	48, 115, 456
Alw26I	GTCTC	2 cut(s)	357, 593
AlwI	GGATC	1 cut(s)	843
AoxI	GGCC	3 cut(s)	139, 581, 1062
ApeKI	GCWGC	1 cut(s)	947
ApoI	RAATTY	2 cut(s)	103, 269
ArsI	GACNNNNNNTTYG	2 cut(s)	848, 880
Asp718I	GGTACC	1 cut(s)	85
AspLEI	GCGC	1 cut(s)	931
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	4 cut(s)	137, 230, 485, 575
AsuII	TTCGAA	1 cut(s)	273
AxyI	CCTNAGG	1 cut(s)	522
BaeGI	GKGCMC	1 cut(s)	850
BanI	GGYRCC	1 cut(s)	85
BanII	GRGCYC	2 cut(s)	48, 115
Bbv12I	GWGCWC	3 cut(s)	48, 115, 456
BbvI	GCAGC	1 cut(s)	934
BccI	CCATC	7 cut(s)	230, 386, 464, 530, 554, 740, 872
BceAI	ACGGC	1 cut(s)	705
BcgI	CGANNNNNNTGC	2 cut(s)	926, 960
BcoDI	GTCTC	2 cut(s)	357, 593
BfmI	CTRYAG	3 cut(s)	633, 948, 1066
BfoI	RGCGCY	1 cut(s)	932
BglII	AGATCT	1 cut(s)	610
BisI	GCNGC	1 cut(s)	948
BlsI	GCNGC	1 cut(s)	949
BmgBI	CACGTC	1 cut(s)	1046
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	3 cut(s)	87, 142, 984
BmsI	GCATC	3 cut(s)	5, 934, 982
BplI	GAGNNNNNCTC	2 cut(s)	30, 62
BpmI	CTGGAG	1 cut(s)	252
Bpu14I	TTCGAA	1 cut(s)	273
BsaBI	GATNNNNATC	2 cut(s)	282, 570
BsaI	GGTCTC	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 169, 487
Bse1I	ACTGG	3 cut(s)	127, 154, 247
Bse21I	CCTNAGG	1 cut(s)	522
Bse3DI	GCAATG	1 cut(s)	876
Bse8I	GATNNNNATC	2 cut(s)	282, 570
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	5 cut(s)	397, 496, 565, 630, 883
BseJI	GATNNNNATC	2 cut(s)	282, 570
BseLI	CCNNNNNNNGG	3 cut(s)	149, 169, 487
BseMI	GCAATG	1 cut(s)	876
BseMII	CTCAG	3 cut(s)	90, 368, 513
BseNI	ACTGG	3 cut(s)	127, 154, 247
BseRI	GAGGAG	1 cut(s)	54
BseSI	GKGCMC	1 cut(s)	850
BseXI	GCAGC	1 cut(s)	934
BseYI	CCCAGC	1 cut(s)	735
BshFI	GGCC	3 cut(s)	141, 583, 1064
BshNI	GGYRCC	1 cut(s)	85
BsiHKAI	GWGCWC	3 cut(s)	48, 115, 456
BslI	CCNNNNNNNGG	3 cut(s)	149, 169, 487
BsmAI	GTCTC	2 cut(s)	357, 593
BsnI	GGCC	3 cut(s)	141, 583, 1064
Bso31I	GGTCTC	1 cut(s)	357
Bsp119I	TTCGAA	1 cut(s)	273
Bsp1286I	GDGCHC	4 cut(s)	48, 115, 456, 850
Bsp143I	GATC	2 cut(s)	610, 835
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	3 cut(s)	96, 228, 442
BspANI	GGCC	3 cut(s)	141, 583, 1064
BspCNI	CTCAG	3 cut(s)	91, 367, 514
BspHI	TCATGA	1 cut(s)	204
BspLI	GGNNCC	3 cut(s)	87, 142, 984
BspMAI	CTGCAG	1 cut(s)	952
BspPI	GGATC	1 cut(s)	843
BspT104I	TTCGAA	1 cut(s)	273
BspT107I	GGYRCC	1 cut(s)	85
BspTNI	GGTCTC	1 cut(s)	357
BsrBI	CCGCTC	1 cut(s)	444
BsrDI	GCAATG	1 cut(s)	876
BsrI	ACTGG	3 cut(s)	127, 154, 247
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	2 cut(s)	610, 835
BssT1I	CCWWGG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	852
Bst6I	CTCTTC	2 cut(s)	753, 758
BstBI	TTCGAA	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	585
BstDEI	CTNAG	3 cut(s)	99, 354, 522
BstDSI	CCRYGG	1 cut(s)	321
BstF5I	GGATG	5 cut(s)	397, 496, 565, 630, 883
BstH2I	RGCGCY	1 cut(s)	932
BstHHI	GCGC	1 cut(s)	931
BstKTI	GATC	2 cut(s)	613, 838
BstMAI	GTCTC	2 cut(s)	357, 593
BstMBI	GATC	2 cut(s)	610, 835
BstMWI	GCNNNNNNNGC	1 cut(s)	926
BstNSI	RCATGY	2 cut(s)	316, 404
BstSFI	CTRYAG	3 cut(s)	633, 948, 1066
BstSLI	GKGCMC	1 cut(s)	850
BstV1I	GCAGC	1 cut(s)	934
BstX2I	RGATCY	2 cut(s)	610, 835
BstYI	RGATCY	2 cut(s)	610, 835
Bsu36I	CCTNAGG	1 cut(s)	522
BsuRI	GGCC	3 cut(s)	141, 583, 1064
BtgI	CCRYGG	1 cut(s)	321
BtrI	CACGTC	1 cut(s)	1046
BtsCI	GGATG	5 cut(s)	397, 496, 565, 630, 883
BtsIMutI	CAGTG	3 cut(s)	147, 848, 858
Cac8I	GCNNGC	1 cut(s)	585
CciI	TCATGA	1 cut(s)	204
CfoI	GCGC	1 cut(s)	931
Cfr13I	GGNCC	1 cut(s)	140
Csp6I	GTAC	3 cut(s)	86, 120, 240
CviAII	CATG	6 cut(s)	205, 299, 313, 322, 401, 925
CviQI	GTAC	3 cut(s)	86, 120, 240
DdeI	CTNAG	3 cut(s)	99, 354, 522
DpnI	GATC	2 cut(s)	612, 837
DpnII	GATC	2 cut(s)	610, 835
Eam1104I	CTCTTC	2 cut(s)	753, 758
EarI	CTCTTC	2 cut(s)	753, 758
Ecl136II	GAGCTC	2 cut(s)	46, 113
Eco130I	CCWWGG	1 cut(s)	321
Eco147I	AGGCCT	1 cut(s)	1064
Eco24I	GRGCYC	2 cut(s)	48, 115
Eco31I	GGTCTC	1 cut(s)	357
Eco32I	GATATC	1 cut(s)	223
Eco53kI	GAGCTC	2 cut(s)	46, 113
Eco57I	CTGAAG	1 cut(s)	627
Eco81I	CCTNAGG	1 cut(s)	522
EcoICRI	GAGCTC	2 cut(s)	46, 113
EcoRV	GATATC	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	321
EcoT38I	GRGCYC	2 cut(s)	48, 115
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	6 cut(s)	208, 302, 316, 325, 404, 928
FatI	CATG	6 cut(s)	204, 298, 312, 321, 400, 924
Fnu4HI	GCNGC	1 cut(s)	948
FokI	GGATG	5 cut(s)	404, 503, 572, 637, 890
FriOI	GRGCYC	2 cut(s)	48, 115
Fsp4HI	GCNGC	1 cut(s)	948
GlaI	GCGC	1 cut(s)	930
GluI	GCNGC	1 cut(s)	948
GsaI	CCCAGC	1 cut(s)	739
GsuI	CTGGAG	1 cut(s)	252
HaeII	RGCGCY	1 cut(s)	932
HaeIII	GGCC	3 cut(s)	141, 583, 1064
HhaI	GCGC	1 cut(s)	931
Hin1II	CATG	6 cut(s)	208, 302, 316, 325, 404, 928
Hin6I	GCGC	1 cut(s)	929
HinP1I	GCGC	1 cut(s)	929
HindIII	AAGCTT	2 cut(s)	897, 958
HinfI	GANTC	3 cut(s)	251, 601, 638
HphI	GGTGA	4 cut(s)	137, 230, 485, 575
Hpy188I	TCNGA	4 cut(s)	110, 339, 656, 840
Hpy188III	TCNNGA	7 cut(s)	23, 205, 287, 367, 575, 605, 725
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	3 cut(s)	44, 124, 409
HpyCH4III	ACNGT	1 cut(s)	852
HpyCH4IV	ACGT	1 cut(s)	1045
HpyCH4V	TGCA	3 cut(s)	869, 950, 1022
HpyF10VI	GCNNNNNNNGC	1 cut(s)	926
HpyF3I	CTNAG	3 cut(s)	99, 354, 522
HpySE526I	ACGT	1 cut(s)	1045
Hsp92II	CATG	6 cut(s)	208, 302, 316, 325, 404, 928
HspAI	GCGC	1 cut(s)	929
KpnI	GGTACC	1 cut(s)	89
Kzo9I	GATC	2 cut(s)	610, 835
LmnI	GCTCC	1 cut(s)	982
Lsp1109I	GCAGC	1 cut(s)	934
LweI	GCATC	3 cut(s)	5, 934, 982
MaeII	ACGT	1 cut(s)	1045
MaeIII	GTNAC	1 cut(s)	789
MalI	GATC	2 cut(s)	612, 837
MbiI	CCGCTC	1 cut(s)	444
MboI	GATC	2 cut(s)	610, 835
MboII	GAAGA	8 cut(s)	287, 542, 620, 770, 775, 896, 1039, 1042
MfeI	CAATTG	1 cut(s)	447
MflI	RGATCY	2 cut(s)	610, 835
MhlI	GDGCHC	4 cut(s)	48, 115, 456, 850
MluCI	AATT	9 cut(s)	103, 269, 290, 328, 420, 447, 642, 750, 999
MlyI	GAGTC	1 cut(s)	595
MnlI	CCTC	3 cut(s)	32, 517, 867
MseI	TTAA	7 cut(s)	195, 423, 645, 696, 894, 933, 1002
MslI	CAYNNNNRTG	1 cut(s)	390
MspA1I	CMGCKG	3 cut(s)	98, 230, 467
MunI	CAATTG	1 cut(s)	447
MwoI	GCNNNNNNNGC	1 cut(s)	926
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	2 cut(s)	610, 835
NlaIII	CATG	6 cut(s)	208, 302, 316, 325, 404, 928
NlaIV	GGNNCC	3 cut(s)	87, 142, 984
NmuCI	GTSAC	1 cut(s)	789
NspI	RCATGY	2 cut(s)	316, 404
NspV	TTCGAA	1 cut(s)	273
PagI	TCATGA	1 cut(s)	204
PceI	AGGCCT	1 cut(s)	1064
PciI	ACATGT	1 cut(s)	400
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 184
PfeI	GAWTC	2 cut(s)	251, 638
PflFI	GACNNNGTC	2 cut(s)	787, 912
PkrI	GCNGC	1 cut(s)	949
PleI	GAGTC	1 cut(s)	595
PpsI	GAGTC	1 cut(s)	595
PscI	ACATGT	1 cut(s)	400
Psp124BI	GAGCTC	2 cut(s)	48, 115
PspFI	CCCAGC	1 cut(s)	735
PspN4I	GGNNCC	3 cut(s)	87, 142, 984
PspPI	GGNCC	1 cut(s)	140
PstI	CTGCAG	1 cut(s)	952
PsuI	RGATCY	2 cut(s)	610, 835
PsyI	GACNNNGTC	2 cut(s)	787, 912
PvuII	CAGCTG	1 cut(s)	467
RsaI	GTAC	3 cut(s)	87, 121, 241
RsaNI	GTAC	3 cut(s)	86, 120, 240
RseI	CAYNNNNRTG	1 cut(s)	390
SacI	GAGCTC	2 cut(s)	48, 115
SaqAI	TTAA	7 cut(s)	195, 423, 645, 696, 894, 933, 1002
SatI	GCNGC	1 cut(s)	948
Sau3AI	GATC	2 cut(s)	610, 835
Sau96I	GGNCC	1 cut(s)	140
SchI	GAGTC	1 cut(s)	595
SduI	GDGCHC	4 cut(s)	48, 115, 456, 850
SfaNI	GCATC	3 cut(s)	5, 934, 982
SfcI	CTRYAG	3 cut(s)	633, 948, 1066
SfuI	TTCGAA	1 cut(s)	273
SmiMI	CAYNNNNRTG	1 cut(s)	390
Sse9I	AATT	9 cut(s)	103, 269, 290, 328, 420, 447, 642, 750, 999
SseBI	AGGCCT	1 cut(s)	1064
SsiI	CCGC	3 cut(s)	96, 228, 442
SspI	AATATT	1 cut(s)	665
SstI	GAGCTC	2 cut(s)	48, 115
StuI	AGGCCT	1 cut(s)	1064
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	852
TaiI	ACGT	1 cut(s)	1048
TaqI	TCGA	5 cut(s)	48, 66, 75, 273, 907
TasI	AATT	9 cut(s)	103, 269, 290, 328, 420, 447, 642, 750, 999
TatI	WGTACW	1 cut(s)	119
TfiI	GAWTC	2 cut(s)	251, 638
Tru1I	TTAA	7 cut(s)	195, 423, 645, 696, 894, 933, 1002
Tru9I	TTAA	7 cut(s)	195, 423, 645, 696, 894, 933, 1002
TscAI	CASTG	3 cut(s)	154, 855, 865
TseFI	GTSAC	1 cut(s)	789
TseI	GCWGC	1 cut(s)	947
Tsp45I	GTSAC	1 cut(s)	789
TspDTI	ATGAA	7 cut(s)	173, 193, 281, 294, 315, 352, 771
TspGWI	ACGGA	1 cut(s)	276
TspRI	CASTG	3 cut(s)	154, 855, 865
Tth111I	GACNNNGTC	2 cut(s)	787, 912
XapI	RAATTY	2 cut(s)	103, 269
XceI	RCATGY	2 cut(s)	316, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.